메뉴 건너뛰기




Volumn 88, Issue 3, 2013, Pages 523-536

Structural characterization of 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA) from Sphingobium chlorophenolicum, a new type of aromatic ring-cleavage enzyme

Author keywords

[No Author keywords available]

Indexed keywords

2,6 DICHLORO PARA HYDROQUINONE 1,2 DIOXYGENASE; ARGININE; CATECHOL DERIVATIVE; DIOXYGENASE; HISTIDINE; HYDROQUINONE; HYDROQUINONE 1,2 DIOXYGENASE; HYDROXYL GROUP; IRON; PHENOL DERIVATIVE; SOLVENT; THREONINE; UNCLASSIFIED DRUG;

EID: 84876722705     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/mmi.12204     Document Type: Article
Times cited : (24)

References (45)
  • 1
  • 5
    • 0023032156 scopus 로고
    • 4-Hydroxyphenylpyruvate dioxygenase is an iron-tyrosinate protein
    • Bradley, F., Lindstedt, S., Lipscomb, J., Que, L., Roe, A., and Rundgren, M. (1986) 4-Hydroxyphenylpyruvate dioxygenase is an iron-tyrosinate protein. J Biol Chem 261: 11693-11696.
    • (1986) J Biol Chem , vol.261 , pp. 11693-11696
    • Bradley, F.1    Lindstedt, S.2    Lipscomb, J.3    Que, L.4    Roe, A.5    Rundgren, M.6
  • 6
    • 0028244448 scopus 로고
    • Phylogenetic evidence for transfer of pentachlorophenol-mineralizing Rhodococcus chlorophenolicus PCP-I(T) to the genus Mycobacterium
    • Briglia, M., Eggen, R., Van Elsas, D., and De Vos, W. (1994) Phylogenetic evidence for transfer of pentachlorophenol-mineralizing Rhodococcus chlorophenolicus PCP-I(T) to the genus Mycobacterium. Int J Syst Bacteriol 44: 494-498.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 494-498
    • Briglia, M.1    Eggen, R.2    Van Elsas, D.3    De Vos, W.4
  • 7
    • 0036718377 scopus 로고    scopus 로고
    • Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723
    • Cai, M., and Xun, L. (2002) Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723. J Bacteriol 184: 4672-4680.
    • (2002) J Bacteriol , vol.184 , pp. 4672-4680
    • Cai, M.1    Xun, L.2
  • 8
    • 0022240851 scopus 로고
    • Microbial removal of pentachlorophenol from soil using a Flavobacterium
    • Crawford, R., and Mohn, W. (1985) Microbial removal of pentachlorophenol from soil using a Flavobacterium. Enzyme Microb Technol 7: 617-620.
    • (1985) Enzyme Microb Technol , vol.7 , pp. 617-620
    • Crawford, R.1    Mohn, W.2
  • 9
    • 0019511605 scopus 로고
    • Environmental chemistry of pentachlorophenol
    • Crosby, D. (1981) Environmental chemistry of pentachlorophenol. Pure Appl Chem 53: 1052-1080.
    • (1981) Pure Appl Chem , vol.53 , pp. 1052-1080
    • Crosby, D.1
  • 10
    • 0037215599 scopus 로고    scopus 로고
    • A previously unrecognized step in pentachlorophenol degradation in Sphingobium chlorophenolicum is catalyzed by tetrachlorobenzoquinone reductase (PcpD)
    • Dai, M., Rogers, J., Warner, J., and Copley, S. (2003) A previously unrecognized step in pentachlorophenol degradation in Sphingobium chlorophenolicum is catalyzed by tetrachlorobenzoquinone reductase (PcpD). J Bacteriol 185: 302-310.
    • (2003) J Bacteriol , vol.185 , pp. 302-310
    • Dai, M.1    Rogers, J.2    Warner, J.3    Copley, S.4
  • 12
    • 0001828796 scopus 로고
    • The 2,3,7,8-trtrachlorodibenzo-para-dioxin problem: a review
    • Firestone, D. (1978) The 2, 3, 7, 8-trtrachlorodibenzo-para-dioxin problem: a review. Stockh Ecol Bull 27: 39-52.
    • (1978) Stockh Ecol Bull , vol.27 , pp. 39-52
    • Firestone, D.1
  • 13
    • 0028245047 scopus 로고
    • Transfer of polychlorophenol-degrading Rhodococcus chlorophenolicus (Apajalahti 1986) to the genus Mycobacterium as Mycobacterium chlorophenolicum comb. nov.
    • Häggblom, M., Nohynek, L., Palleroni, N., Kronqvist, K., Nurmiaho-Lassila, E., Salkinoja-Salonen, M., etal. (1994) Transfer of polychlorophenol-degrading Rhodococcus chlorophenolicus (Apajalahti etal. 1986) to the genus Mycobacterium as Mycobacterium chlorophenolicum comb. nov. J Syst Bacteriol 44: 485-493.
    • (1994) J Syst Bacteriol , vol.44 , pp. 485-493
    • Häggblom, M.1    Nohynek, L.2    Palleroni, N.3    Kronqvist, K.4    Nurmiaho-Lassila, E.5    Salkinoja-Salonen, M.6
  • 14
    • 0026805891 scopus 로고
    • Functional and evolutionary relationships among diverse oxygenases
    • Harayama, S., Kok, M., and Neidle, E. (1992) Functional and evolutionary relationships among diverse oxygenases. Annu Rev Microbiol 46: 565-601.
    • (1992) Annu Rev Microbiol , vol.46 , pp. 565-601
    • Harayama, S.1    Kok, M.2    Neidle, E.3
  • 15
    • 79961110102 scopus 로고    scopus 로고
    • Structural and mechanistic comparisons of the metal-binding members of the vicinal oxygen chelate (VOC) superfamily
    • He, P., and Moran, G. (2011) Structural and mechanistic comparisons of the metal-binding members of the vicinal oxygen chelate (VOC) superfamily. J Inorg Biochem 105: 1259-1272.
    • (2011) J Inorg Biochem , vol.105 , pp. 1259-1272
    • He, P.1    Moran, G.2
  • 16
    • 0033179656 scopus 로고    scopus 로고
    • Natural formation of chlorinated phenols, dibenzo-p-dioxins, and dibenzofurans in soil of a Douglas fir forest
    • Hoekstra, E., de Weerd, H., de Leer, E., and Brinkman, U. (1999) Natural formation of chlorinated phenols, dibenzo-p-dioxins, and dibenzofurans in soil of a Douglas fir forest. Environ Sci Technol 33: 2543-2549.
    • (1999) Environ Sci Technol , vol.33 , pp. 2543-2549
    • Hoekstra, E.1    de Weerd, H.2    de Leer, E.3    Brinkman, U.4
  • 17
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm, L., and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233: 123-138.
    • (1993) J Mol Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 18
    • 0030596529 scopus 로고    scopus 로고
    • Mechanism of Fe(III)-Zn(II) purple acid phosphatase based on crystal structures
    • Klabunde, T., Sträter, N., Fröhlich, R., Witzel, H., and Krebs, B. (1996) Mechanism of Fe(III)-Zn(II) purple acid phosphatase based on crystal structures. J Mol Biol 259: 737-748.
    • (1996) J Mol Biol , vol.259 , pp. 737-748
    • Klabunde, T.1    Sträter, N.2    Fröhlich, R.3    Witzel, H.4    Krebs, B.5
  • 19
    • 17644413773 scopus 로고    scopus 로고
    • The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes
    • Koehntop, K., Emerson, J., and Que, L.J. (2005) The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes. J Biol Inorg Chem 10: 87-93.
    • (2005) J Biol Inorg Chem , vol.10 , pp. 87-93
    • Koehntop, K.1    Emerson, J.2    Que, L.J.3
  • 20
    • 34247534094 scopus 로고    scopus 로고
    • 2+ dioxygenase superoxo, alkylperoxo, and bound product intermediates
    • 2+ dioxygenase superoxo, alkylperoxo, and bound product intermediates. Science 316: 453-457.
    • (2007) Science , vol.316 , pp. 453-457
    • Kovaleva, E.G.1    Lipscomb, J.D.2
  • 21
    • 57049146277 scopus 로고    scopus 로고
    • Mechanism of extradiol aromatic ring-cleaving dioxygenases
    • Lipscomb, J.D. (2008) Mechanism of extradiol aromatic ring-cleaving dioxygenases. Curr Opin Struct Biol 18: 644-649.
    • (2008) Curr Opin Struct Biol , vol.18 , pp. 644-649
    • Lipscomb, J.D.1
  • 22
    • 77949261552 scopus 로고    scopus 로고
    • Determination of the active site of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone dioxygenase (PcpA)
    • Machonkin, T., Holland, P., Smith, K., Liberman, J., Dinescu, A., Cundari, T., and Rocks, S. (2010) Determination of the active site of Sphingobium chlorophenolicum 2, 6-dichlorohydroquinone dioxygenase (PcpA). J Biol Inorg Chem 15: 291-301.
    • (2010) J Biol Inorg Chem , vol.15 , pp. 291-301
    • Machonkin, T.1    Holland, P.2    Smith, K.3    Liberman, J.4    Dinescu, A.5    Cundari, T.6    Rocks, S.7
  • 23
    • 80054757502 scopus 로고    scopus 로고
    • Substrate specificity of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone 1,2-dioxygenase
    • Machonkin, T.E., and Doerner, A.E. (2011) Substrate specificity of Sphingobium chlorophenolicum 2, 6-dichlorohydroquinone 1, 2-dioxygenase. Biochemistry 50: 8899-8913.
    • (2011) Biochemistry , vol.50 , pp. 8899-8913
    • Machonkin, T.E.1    Doerner, A.E.2
  • 24
    • 0029659241 scopus 로고    scopus 로고
    • Accelerated mineralization of pentachlorophenol in soil upon inoculation with Mycobacterium chlorophenolicum PCP1 and Sphingomonas chlorophenolica RA2
    • Miethling, R., and Karlson, U. (1996) Accelerated mineralization of pentachlorophenol in soil upon inoculation with Mycobacterium chlorophenolicum PCP1 and Sphingomonas chlorophenolica RA2. Appl Environ Microbiol 62: 4361-4366.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4361-4366
    • Miethling, R.1    Karlson, U.2
  • 25
    • 0032704711 scopus 로고    scopus 로고
    • Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis
    • Miyauchi, K., Adachi, Y., Nagata, Y., and Takagi, M. (1999) Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis. J Bacteriol 181: 6712-6719.
    • (1999) J Bacteriol , vol.181 , pp. 6712-6719
    • Miyauchi, K.1    Adachi, Y.2    Nagata, Y.3    Takagi, M.4
  • 26
    • 48149092978 scopus 로고    scopus 로고
    • Hydroquinone dioxygenase from pseudomonas fluorescens ACB: a novel member of the family of nonheme-iron(II)-dependent dioxygenases
    • Moonen, M.J., Synowsky, S.A., van den Berg, W.A., Westphal, A.H., Heck, A.J., van den Heuvel, R.H., etal. (2008) Hydroquinone dioxygenase from pseudomonas fluorescens ACB: a novel member of the family of nonheme-iron(II)-dependent dioxygenases. J Bacteriol 190: 5199-5209.
    • (2008) J Bacteriol , vol.190 , pp. 5199-5209
    • Moonen, M.J.1    van den Synowsky, S.A.2    Berg, W.A.3    Westphal, A.H.4    van den Heck, A.J.5    Heuvel, R.H.6
  • 28
    • 0032885089 scopus 로고    scopus 로고
    • PcpA, which is involved in the degradation of pentachlorophenol in Sphingomonas chlorophenolica ATCC39723, is a novel type of ring-cleavage dioxygenase
    • Ohtsubo, Y., Miyauchi, K., Kanda, K., Hatta, T., Kiyohara, H., Senda, T., etal. (1999) PcpA, which is involved in the degradation of pentachlorophenol in Sphingomonas chlorophenolica ATCC39723, is a novel type of ring-cleavage dioxygenase. FEBS Lett 459: 395-598.
    • (1999) FEBS Lett , vol.459 , pp. 395-598
    • Ohtsubo, Y.1    Miyauchi, K.2    Kanda, K.3    Hatta, T.4    Kiyohara, H.5    Senda, T.6
  • 29
    • 0027204866 scopus 로고
    • Characterization of a Flavobacterium glutathione S-transferase gene involved reductive dechlorination
    • Orser, C.S., Dutton, J., Lange, C., Jablonski, P., Xun, L., and Hargis, M. (1993) Characterization of a Flavobacterium glutathione S-transferase gene involved reductive dechlorination. J Bacteriol 175: 2640-2644.
    • (1993) J Bacteriol , vol.175 , pp. 2640-2644
    • Orser, C.S.1    Dutton, J.2    Lange, C.3    Jablonski, P.4    Xun, L.5    Hargis, M.6
  • 30
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 31
    • 0039302669 scopus 로고    scopus 로고
    • Dioxygen activation by enzymes with mononuclear nonheme iron active sites
    • Que, L., and Ho, R. (1996) Dioxygen activation by enzymes with mononuclear nonheme iron active sites. Chem Rev 96: 2607-2624.
    • (1996) Chem Rev , vol.96 , pp. 2607-2624
    • Que, L.1    Ho, R.2
  • 32
    • 0022411177 scopus 로고
    • Isolation and characterization of Flavobacterium strains that degrade pentachlorophenol
    • Saber, D., and Crawford, R. (1985) Isolation and characterization of Flavobacterium strains that degrade pentachlorophenol. Appl Environ Microbiol 50: 1512-1518.
    • (1985) Appl Environ Microbiol , vol.50 , pp. 1512-1518
    • Saber, D.1    Crawford, R.2
  • 33
    • 0033397980 scopus 로고    scopus 로고
    • Python: a programming language for software integration and development
    • Sanner, M. (1999) Python: a programming language for software integration and development. J Mol Graph Model 17: 57-61.
    • (1999) J Mol Graph Model , vol.17 , pp. 57-61
    • Sanner, M.1
  • 34
    • 0036965765 scopus 로고    scopus 로고
    • Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase
    • Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., etal. (2002) Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase. J Mol Biol 321: 621-636.
    • (2002) J Mol Biol , vol.321 , pp. 621-636
    • Sato, N.1    Uragami, Y.2    Nishizaki, T.3    Takahashi, Y.4    Sazaki, G.5    Sugimoto, K.6
  • 35
    • 0030008087 scopus 로고    scopus 로고
    • Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102
    • Senda, T., Sugiyama, K., Narita, H., Yamamoto, T., Kimbara, K., Fukuda, M., etal. (1996) Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102. J Mol Biol 255: 735-752.
    • (1996) J Mol Biol , vol.255 , pp. 735-752
    • Senda, T.1    Sugiyama, K.2    Narita, H.3    Yamamoto, T.4    Kimbara, K.5    Fukuda, M.6
  • 36
    • 77957746479 scopus 로고    scopus 로고
    • Cloning and characterization of a gene cluster involved in the catabolism of p-nitrophenol from Pseudomonas putida DLL-E4
    • Shen, W., Liu, W., Zhang, J., Tao, J., Deng, H., Cao, H., and Cui, Z. (2010) Cloning and characterization of a gene cluster involved in the catabolism of p-nitrophenol from Pseudomonas putida DLL-E4. Bioresour Technol 101: 7516-7522.
    • (2010) Bioresour Technol , vol.101 , pp. 7516-7522
    • Shen, W.1    Liu, W.2    Zhang, J.3    Tao, J.4    Deng, H.5    Cao, H.6    Cui, Z.7
  • 37
    • 0029038688 scopus 로고
    • X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism
    • Shu, L., Chiou, Y.M., Orville, A.M., Miller, M.A., Lipscomb, J.D., and Que, L., Jr. (1995) X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2, 3-dioxygenase. Implications for the extradiol cleavage mechanism. Biochemistry 34: 6649-6659.
    • (1995) Biochemistry , vol.34 , pp. 6649-6659
    • Shu, L.1    Chiou, Y.M.2    Orville, A.M.3    Miller, M.A.4    Lipscomb, J.D.5    Que Jr., L.6
  • 38
    • 9944235885 scopus 로고    scopus 로고
    • Highly accurate coupled cluster potential energy curves for the benzene dimer: sandwich, T-shaped, and parallel-displaced configurations
    • Sinnokrot, M., and Sherril, C. (2004) Highly accurate coupled cluster potential energy curves for the benzene dimer: sandwich, T-shaped, and parallel-displaced configurations. J Phys Chem A 108: 10200-10207.
    • (2004) J Phys Chem A , vol.108 , pp. 10200-10207
    • Sinnokrot, M.1    Sherril, C.2
  • 39
    • 77955512534 scopus 로고    scopus 로고
    • Thermodynamic and kinetic considerations for the reaction of semiquinone radicals to form superoxide and hydrogen peroxide
    • Song, Y., and Buettner, G. (2010) Thermodynamic and kinetic considerations for the reaction of semiquinone radicals to form superoxide and hydrogen peroxide. Free Radic Biol Med 49: 919-962.
    • (2010) Free Radic Biol Med , vol.49 , pp. 919-962
    • Song, Y.1    Buettner, G.2
  • 40
    • 80355135227 scopus 로고    scopus 로고
    • Sphingobium chlorophenolicum dichlorohydroquinone dioxygenase (PcpA) is alkaline resistant and thermally stable
    • Sun, W., Sammynaiken, R., Chen, L., Maley, J., Schatte, G., Zhou, Y., and Yang, J. (2011) Sphingobium chlorophenolicum dichlorohydroquinone dioxygenase (PcpA) is alkaline resistant and thermally stable. Int J Biol Sci 7: 1171-1179.
    • (2011) Int J Biol Sci , vol.7 , pp. 1171-1179
    • Sun, W.1    Sammynaiken, R.2    Chen, L.3    Maley, J.4    Schatte, G.5    Zhou, Y.6    Yang, J.7
  • 41
    • 0036135280 scopus 로고    scopus 로고
    • Isolation and characterization of Novosphingobium sp. strain MT1, a dominant polychlorophenol-degrading strain in a groundwater bioremediation system
    • Tiirola, M., Männistö, M., Puhakka, J., and Kulomaa, M. (2002) Isolation and characterization of Novosphingobium sp. strain MT1, a dominant polychlorophenol-degrading strain in a groundwater bioremediation system. Appl Environ Microbiol 68: 173-180.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 173-180
    • Tiirola, M.1    Männistö, M.2    Puhakka, J.3    Kulomaa, M.4
  • 42
    • 76249124150 scopus 로고    scopus 로고
    • Characterization of chlorophenol 4-monooxygenase (TftD) and NADH:FAD oxidoreductase (TftC) of Burkholderia cepacia AC1100
    • Webb, B.N., Ballinger, J.W., Kim, E., Belchik, S.M., Lam, K.S., Youn, B., etal. (2010) Characterization of chlorophenol 4-monooxygenase (TftD) and NADH:FAD oxidoreductase (TftC) of Burkholderia cepacia AC1100. J Biol Chem 285: 2014-2027.
    • (2010) J Biol Chem , vol.285 , pp. 2014-2027
    • Webb, B.N.1    Ballinger, J.W.2    Kim, E.3    Belchik, S.M.4    Lam, K.S.5    Youn, B.6
  • 43
    • 0025733737 scopus 로고
    • Purification and properties of pentachlorophenol hydroxylase, a flavoprotein from Flavobacterium sp. strain ATCC 39723
    • Xun, L., and Orser, C.S. (1991) Purification and properties of pentachlorophenol hydroxylase, a flavoprotein from Flavobacterium sp. strain ATCC 39723. J Bacteriol 173: 4447-4453.
    • (1991) J Bacteriol , vol.173 , pp. 4447-4453
    • Xun, L.1    Orser, C.S.2
  • 44
    • 0033590113 scopus 로고    scopus 로고
    • Characterization of 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA) of Sphingomonas chlorophenolica ATCC 39723
    • Xun, L., Bohuslavek, J., and Cai, M. (1999) Characterization of 2, 6-dichloro-p-hydroquinone 1, 2-dioxygenase (PcpA) of Sphingomonas chlorophenolica ATCC 39723. Biochem Biophys Res Commun 266: 322-325.
    • (1999) Biochem Biophys Res Commun , vol.266 , pp. 322-325
    • Xun, L.1    Bohuslavek, J.2    Cai, M.3
  • 45
    • 78149409239 scopus 로고    scopus 로고
    • Characterization of MnpC, a hydroquinone dioxygenase likely involved in the meta-nitrophenol degradation by Cupriavidus necator JMP134
    • Yin, Y., and Zhou, N.Y. (2010) Characterization of MnpC, a hydroquinone dioxygenase likely involved in the meta-nitrophenol degradation by Cupriavidus necator JMP134. Curr Microbiol 61: 471-476.
    • (2010) Curr Microbiol , vol.61 , pp. 471-476
    • Yin, Y.1    Zhou, N.Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.