Development of a capillary electrophoresis-mass spectrometry method for small peptides in the soil solution

Soil Biology and Biochemistry

Volumn 63, Issue , 2013, Pages 80-84

  Warren, Charles R ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Amino acid; CE MS; Nitrogen cycle; Organic N; Peptide; Protein; Soil; Soil solution

Indexed keywords

BASIC AMINO ACIDS; CAPILLARY ELECTROPHORESIS-MASS SPECTROMETRIES; CE-MS; NITROGEN CYCLES; ORGANIC N; PEPTIDE STANDARDS; PREFERENTIAL ADSORPTION; SOIL SOLUTIONS;

AMINO ACIDS; CAPILLARY ELECTROPHORESIS; MASS SPECTROMETRY; PROTEINS; SEPARATION; SOIL MOISTURE; SOILS;

PEPTIDES;

AMINO ACID; BIOLOGICAL UPTAKE; CLAY SOIL; ELECTROKINESIS; MASS SPECTROMETRY; MESOCOSM; NITROGEN CYCLE; PEPTIDE; PROTEIN; SEPARATION;

EID: 84876717184     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2013.03.033     Document Type: Article

References (26)

1. Chapin F.S., Moilanen L., Kielland K. Preferential use of organic nitrogen for growth by a nonmycorrhizal arctic sedge. Nature 1993, 361:150-153.
2. Cifuentes A., Poppe H. Behavior of peptides in capillary electrophoresis: effect of peptide charge, mass and structure. Electrophoresis 1997, 18:2362-2376.
3. Daniel H., Spanier B., Kottra G., Weitz D. From bacteria to man: archaic proton-dependent peptide transporters at work. Physiology 2006, 21:93-102.
4. Farrell M., Hill P.W., Farrar J., Bardgett R.D., Jones D.L. Seasonal variation in soluble soil carbon and nitrogen across a grassland productivity gradient. Soil Biology & Biochemistry 2011, 43:835-844.
5. Farrell M., Hill P.W., Wanniarachchi S.D., Farrar J., Bardgett R.D., Jones D.L. Rapid peptide metabolism: a major component of soil nitrogen cycling?. Global Biogeochemical Cycles 2011, 25.
6. Faserl K., Sarg B., Kremser L., Lindner H. Optimization and evaluation of a sheathless capillary electrophoresis-electrospray ionization mass spectrometry platform for peptide analysis: comparison to liquid chromatography-electrospray ionization mass spectrometry. Analytical Chemistry 2011, 83:7297-7305.
7. Frank A.M., Savitski M.M., Nielsen M.L., Zubarev R.A., Pevzner P.A. De novo peptide sequencing and identification with precision mass spectrometry. Journal of Proteome Research 2007, 6:114-123.
8. Hill P.W., Farrell M., Jones D.L. Bigger may be better in soil N cycling: does rapid acquisition of small L-peptides by soil microbes dominate fluxes of protein-derived N in soil?. Soil Biology & Biochemistry 2012, 48:106-112.
9. Hill P.W., et al. Acquisition and assimilation of nitrogen as peptide-bound and d-enantiomers of amino acids by wheat. Plos One 2011, 6.
10. Hunt D.F., Yates J.R., Shabanowitz J., Winston S., Hauer C.R. Protein sequencing by tandem mass-spectrometry. Proceedings of the National Academy of Sciences of the United States of America 1986, 83:6233-6237.
11. Jones D.L., Darrah P.R. Influx and efflux of amino-acids from Zea mays L roots and their implications for N-nutrition and the rhizosphere. Plant and Soil 1993, 156:87-90.
12. Jones D.L., Hodge A. Biodegradation kinetics and sorption reactions of three differently charged amino acids in soil and their effects on plant organic nitrogen availability. Soil Biology & Biochemistry 1999, 31:1331-1342.
13. Kolch W., Neususs C., Peizing M., Mischak H. Capillary electrophoresis - mass spectrometry as a powerful tool in clinical diagnosis and biomarker discovery. Mass Spectrometry Reviews 2005, 24:959-977.
14. Li Y.H., Champion M.M., Sun L.L., Champion P.A.D., Wojcik R., Dovichi N.J. Capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry as an alternative proteomics platform to ultraperformance liquid chromatography-electrospray ionization-tandem mass spectrometry for samples of intermediate complexity. Analytical Chemistry 2012, 84:1617-1622.
15. Lister N., Sykes A.P., Bailey P.D., Boyd C.A.R., Bronk J.R. Dipeptide transport and hydrolysis in isolated loops of rat small intestine - effects of stereospecificity. Journal of Physiology-London 1995, 484:173-182.
16. Näsholm T., Kielland K., Ganeteg U. Uptake of organic nitrogen by plants. New Phytologist 2009, 182:31-48.
17. Payne J.W., Grail B.M., Marshall N.J. Molecular recognition templates of peptides: driving force for molecular evolution of peptide transporters. Biochemical and Biophysical Research Communications 2000, 267:283-289.
18. Smith C.A., et al. METLIN - a metabolite mass spectral database. Therapeutic Drug Monitoring 2005, 27:747-751.
19. Sumner L.W., et al. Proposed minimum reporting standards for chemical analysis. Metabolomics 2007, 3:211-221.
20. Warren C.R. Potential organic and inorganic N uptake by six Eucalyptus species. Functional Plant Biology 2006, 33:653-660.
21. Warren C.R. High diversity of small organic N observed in soil water. Soil Biology & Biochemistry 2013, 57:444-450.
22. Warren C.R. Quaternary ammonium compounds can be abundant in some soils and are taken up as intact molecules by plants. New Phytologist 2013, 10.1111/nph.12171.
23. Yang Y.Z., Boysen R.I., Hearn M.T.W. Hydrophilic interaction chromatography coupled to electrospray mass spectrometry for the separation of peptides and protein digests. Journal of Chromatography A 2009, 1216:5518-5524.
24. Zubarev R., Mann M. On the proper use of mass accuracy in proteomics. Molecular & Cellular Proteomics 2007, 6:377-381.
25. Zubarev R.A., Hakansson P., Sundqvist B. Accuracy requirements for peptide characterization by monoisotopic molecular mass measurements. Analytical Chemistry 1996, 68:4060-4063.
26. Zurbig P., et al. Biomarker discovery by CE-MS enables sequence analysis via MS/MS with platform-independent separation. Electrophoresis 2006, 27:2111-2125.