메뉴 건너뛰기




Volumn 16, Issue 5, 2013, Pages 650-655

Real-time microbial adaptive diversification in soil

Author keywords

Adaptive radiation; Bacteria diversity; Competition; Ecological niche; Pseudomonas fluorescens; Soil; Wrinkly spreader

Indexed keywords

ADAPTIVE RADIATION; BACTERIUM; COMMUNITY DYNAMICS; COMPETITION (ECOLOGY); DIVERGENCE; MICROBIAL COMMUNITY; NICHE; POPULATION DYNAMICS; RESIDENT POPULATION; SOIL MICROORGANISM; SPECIES DIVERSITY;

EID: 84876713738     PISSN: 1461023X     EISSN: 14610248     Source Type: Journal    
DOI: 10.1111/ele.12093     Document Type: Article
Times cited : (61)

References (47)
  • 1
    • 34247263879 scopus 로고    scopus 로고
    • Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity
    • Bantinaki, E., Kassen, R., Knight, C.G., Robinson, Z., Spiers, A.J. & Rainey, P.B. (2007). Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics, 176, 441-453.
    • (2007) Genetics , vol.176 , pp. 441-453
    • Bantinaki, E.1    Kassen, R.2    Knight, C.G.3    Robinson, Z.4    Spiers, A.J.5    Rainey, P.B.6
  • 2
    • 39749187343 scopus 로고    scopus 로고
    • The interactive effects of parasites disturbance, and productivity on experimental adaptive radiations
    • Benmayor, R., Buckling, A., Bonsall, M.B., Brockhurst, M.A. & Hodgson, D.J. (2008). The interactive effects of parasites disturbance, and productivity on experimental adaptive radiations. Evolution, 62, 467-477.
    • (2008) Evolution , vol.62 , pp. 467-477
    • Benmayor, R.1    Buckling, A.2    Bonsall, M.B.3    Brockhurst, M.A.4    Hodgson, D.J.5
  • 3
    • 0347933053 scopus 로고    scopus 로고
    • The effect of spatial heterogeneity and parasites on the evolution of host diversity
    • Brockhurst, M.A., Rainey, P.B. & Buckling, A. (2004). The effect of spatial heterogeneity and parasites on the evolution of host diversity. Proc. Biol. Sci., 271, 107-111.
    • (2004) Proc. Biol. Sci. , vol.271 , pp. 107-111
    • Brockhurst, M.A.1    Rainey, P.B.2    Buckling, A.3
  • 4
    • 34247371700 scopus 로고    scopus 로고
    • Niche occupation limits adaptive radiation in experimental microcosms
    • Brockhurst, M.A., Colegrave, N., Hodgson, D.J. & Buckling, A. (2007). Niche occupation limits adaptive radiation in experimental microcosms. PLoS ONE, 2, e193.
    • (2007) PLoS ONE , vol.2
    • Brockhurst, M.A.1    Colegrave, N.2    Hodgson, D.J.3    Buckling, A.4
  • 5
    • 0037035385 scopus 로고    scopus 로고
    • Antagonistic coevolution between a bacterium and a bacteriophage
    • Buckling, A. & Rainey, P.B. (2002a). Antagonistic coevolution between a bacterium and a bacteriophage. Proc. Biol. Sci., 269, 931-936.
    • (2002) Proc. Biol. Sci. , vol.269 , pp. 931-936
    • Buckling, A.1    Rainey, P.B.2
  • 6
    • 0037028084 scopus 로고    scopus 로고
    • The role of parasites in sympatric and allopatric host diversification
    • Buckling, A. & Rainey, P.B. (2002b). The role of parasites in sympatric and allopatric host diversification. Nature, 420, 496-499.
    • (2002) Nature , vol.420 , pp. 496-499
    • Buckling, A.1    Rainey, P.B.2
  • 7
    • 0034503114 scopus 로고    scopus 로고
    • Mechanisms of maintenance of species diversity
    • Chesson, P. (2000). Mechanisms of maintenance of species diversity. Ann. Rev. Ecol. Syst., 31, 343-366.
    • (2000) Ann. Rev. Ecol. Syst. , vol.31 , pp. 343-366
    • Chesson, P.1
  • 9
    • 43949112619 scopus 로고    scopus 로고
    • Macroevolution of ecosystem engineering, niche construction and diversity
    • Erwin, D.H. (2008). Macroevolution of ecosystem engineering, niche construction and diversity. Trends Ecol. Evol., 23, 304-310.
    • (2008) Trends Ecol. Evol. , vol.23 , pp. 304-310
    • Erwin, D.H.1
  • 10
    • 79954615136 scopus 로고    scopus 로고
    • Interplay between changing climate and species' ecology drives macroevolutionary dynamics
    • Ezard, T.H.G., Aze, T., Pearson, P.N. & Purvis, A. (2011). Interplay between changing climate and species' ecology drives macroevolutionary dynamics. Science, 332, 349-351.
    • (2011) Science , vol.332 , pp. 349-351
    • Ezard, T.H.G.1    Aze, T.2    Pearson, P.N.3    Purvis, A.4
  • 11
    • 1642388599 scopus 로고    scopus 로고
    • Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli
    • Friesen, M.L., Saxer, G., Travisano, M. & Doebeli, M. (2004). Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli. Evolution, 58, 245-260.
    • (2004) Evolution , vol.58 , pp. 245-260
    • Friesen, M.L.1    Saxer, G.2    Travisano, M.3    Doebeli, M.4
  • 12
    • 33947513367 scopus 로고    scopus 로고
    • Immigration history controls diversification in experimental adaptive radiation
    • Fukami, T., Beaumont, H.J., Zhang, X.X. & Rainey, P.B. (2007). Immigration history controls diversification in experimental adaptive radiation. Nature, 446, 436-439.
    • (2007) Nature , vol.446 , pp. 436-439
    • Fukami, T.1    Beaumont, H.J.2    Zhang, X.X.3    Rainey, P.B.4
  • 13
    • 59949083744 scopus 로고    scopus 로고
    • Adaptive radiation: contrasting theory with data
    • Gavrilets, S. & Losos, J.B. (2009). Adaptive radiation: contrasting theory with data. Science, 323, 732-737.
    • (2009) Science , vol.323 , pp. 732-737
    • Gavrilets, S.1    Losos, J.B.2
  • 14
    • 79953281735 scopus 로고    scopus 로고
    • Bacteria-phage antagonistic coevolution in soil
    • Gómez, P. & Buckling, A. (2011). Bacteria-phage antagonistic coevolution in soil. Science, 332, 106-109.
    • (2011) Science , vol.332 , pp. 106-109
    • Gómez, P.1    Buckling, A.2
  • 15
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: from the natural environment to infectious diseases
    • Hall-Stoodley, L., Costerton, J.W. & Stoodley, P. (2004). Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol., 2, 95-108.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 95-108
    • Hall-Stoodley, L.1    Costerton, J.W.2    Stoodley, P.3
  • 16
    • 65949093892 scopus 로고    scopus 로고
    • Evolutionary diversification in stickleback affects ecosystem functioning
    • Harmon, L.J., B. Matthews, S., Des Roches, J., Chase, M., Shurin, J.B. & Schluter, D. (2009). Evolutionary diversification in stickleback affects ecosystem functioning. Nature, 458, 1167-1170.
    • (2009) Nature , vol.458 , pp. 1167-1170
    • Harmon, L.J.1    Matthews, S.B.2    Des Roches, J.3    Chase, M.4    Shurin, J.B.5    Schluter, D.6
  • 17
    • 0001667825 scopus 로고
    • Genetic-polymorphism in heterogeneous environments - a decade later
    • Hedrick, P.W. (1986). Genetic-polymorphism in heterogeneous environments - a decade later. Ann. Rev. Ecol. Syst., 17, 535-566.
    • (1986) Ann. Rev. Ecol. Syst. , vol.17 , pp. 535-566
    • Hedrick, P.W.1
  • 18
    • 77951499585 scopus 로고    scopus 로고
    • Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
    • Hemme, C.L., Deng, Y., Gentry, T.J., Fields, M.W., Wu, L., Barua, S. et al. (2010). Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J., 4, 660-672.
    • (2010) ISME J. , vol.4 , pp. 660-672
    • Hemme, C.L.1    Deng, Y.2    Gentry, T.J.3    Fields, M.W.4    Wu, L.5    Barua, S.6
  • 19
    • 0035826732 scopus 로고    scopus 로고
    • Lessons from the past: evolutionary impacts of mass extinctions
    • Jablonski, D. (2001). Lessons from the past: evolutionary impacts of mass extinctions. Proc. Natl. Acad. Sci. USA, 98, 5393-5398.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5393-5398
    • Jablonski, D.1
  • 20
    • 78049522796 scopus 로고    scopus 로고
    • Long-term impacts of antibiotic exposure on the human intestinal microbiota
    • Jernberg, C., Lofmark, S., Edlund, C. & Jansson, J.K. (2010). Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology, 156, 3216-3223.
    • (2010) Microbiology , vol.156 , pp. 3216-3223
    • Jernberg, C.1    Lofmark, S.2    Edlund, C.3    Jansson, J.K.4
  • 21
    • 79953023644 scopus 로고    scopus 로고
    • Environmental modification and niche construction: developing O2 gradients drive the evolution of the Wrinkly Spreader
    • Koza, A., Moshynets, O., Otten, W. & Spiers, A.J. (2011). Environmental modification and niche construction: developing O2 gradients drive the evolution of the Wrinkly Spreader. ISME J., 5, 665-673.
    • (2011) ISME J. , vol.5 , pp. 665-673
    • Koza, A.1    Moshynets, O.2    Otten, W.3    Spiers, A.J.4
  • 23
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
    • Lenski, R.E., Rose, M.R., Simpson, S.C. & Tadler, S.C. (1991). Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2, 000 generations. Am. Nat., 138, 1315-1341.
    • (1991) Am. Nat. , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 24
    • 78149294782 scopus 로고    scopus 로고
    • Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections
    • Levert, M., Zamfir, O., Clermont, O., Bouvet, O., Lespinats, S., Hipeaux, M.C. et al. (2010). Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathog., 6, e1001125.
    • (2010) PLoS Pathog. , vol.6
    • Levert, M.1    Zamfir, O.2    Clermont, O.3    Bouvet, O.4    Lespinats, S.5    Hipeaux, M.C.6
  • 25
    • 77952063432 scopus 로고    scopus 로고
    • Adaptive radiation, ecological opportunity, and evolutionary determinism
    • Losos, J.B. (2010). Adaptive radiation, ecological opportunity, and evolutionary determinism. Am. Nat., 175, 623-639.
    • (2010) Am. Nat. , vol.175 , pp. 623-639
    • Losos, J.B.1
  • 26
    • 2542635754 scopus 로고    scopus 로고
    • The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens
    • MacLean, R.C., Bell, G. & Rainey, P.B. (2004). The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens. Proc. Natl. Acad. Sci. USA, 101, 8072-8077.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 8072-8077
    • MacLean, R.C.1    Bell, G.2    Rainey, P.B.3
  • 27
    • 33947504820 scopus 로고    scopus 로고
    • The effects of competition and predation on diversification in a model adaptive radiation
    • Meyer, J.R. & Kassen, R. (2007). The effects of competition and predation on diversification in a model adaptive radiation. Nature, 446, 432-435.
    • (2007) Nature , vol.446 , pp. 432-435
    • Meyer, J.R.1    Kassen, R.2
  • 28
    • 37249025333 scopus 로고    scopus 로고
    • Coevolution with viruses drives the evolution of bacterial mutation rates
    • Pal, C., Macia, M.D., Oliver, A., Schachar, I. & Buckling, A. (2007). Coevolution with viruses drives the evolution of bacterial mutation rates. Nature, 450, 1079-1081.
    • (2007) Nature , vol.450 , pp. 1079-1081
    • Pal, C.1    Macia, M.D.2    Oliver, A.3    Schachar, I.4    Buckling, A.5
  • 30
    • 0030052873 scopus 로고    scopus 로고
    • Physical and genetic map of the Pseudomonas fluorescens SBW25 chromosome
    • Rainey, P.B. & Bailey, M.J. (1996). Physical and genetic map of the Pseudomonas fluorescens SBW25 chromosome. Mol. Microbiol., 19, 521-533.
    • (1996) Mol. Microbiol. , vol.19 , pp. 521-533
    • Rainey, P.B.1    Bailey, M.J.2
  • 31
    • 0042410586 scopus 로고    scopus 로고
    • Evolution of cooperation and conflict in experimental bacterial populations
    • Rainey, P.B. & Rainey, K. (2003). Evolution of cooperation and conflict in experimental bacterial populations. Nature, 425, 72-74.
    • (2003) Nature , vol.425 , pp. 72-74
    • Rainey, P.B.1    Rainey, K.2
  • 32
    • 0032474853 scopus 로고    scopus 로고
    • Adaptive radiation in a heterogeneous environment
    • Rainey, P.B. & Travisano, M. (1998). Adaptive radiation in a heterogeneous environment. Nature, 394, 69-72.
    • (1998) Nature , vol.394 , pp. 69-72
    • Rainey, P.B.1    Travisano, M.2
  • 33
    • 76549104049 scopus 로고    scopus 로고
    • Evolutionary diversification, coevolution between populations and their antagonists, and the filling of niche space
    • Ricklefs, R.E. (2010). Evolutionary diversification, coevolution between populations and their antagonists, and the filling of niche space. Proc. Natl. Acad. Sci. USA, 107, 1265-1272.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 1265-1272
    • Ricklefs, R.E.1
  • 34
    • 0028094645 scopus 로고
    • Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli
    • Rosenzweig, R.F., Sharp, R.R., Treves, D.S. & Adams, J. (1994). Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli. Genetics, 137, 903-917.
    • (1994) Genetics , vol.137 , pp. 903-917
    • Rosenzweig, R.F.1    Sharp, R.R.2    Treves, D.S.3    Adams, J.4
  • 36
    • 79251576147 scopus 로고    scopus 로고
    • The newest synthesis: understanding the interplay of evolutionary and ecological dynamics
    • Schoener, T.W. (2011). The newest synthesis: understanding the interplay of evolutionary and ecological dynamics. Science, 331, 426-429.
    • (2011) Science , vol.331 , pp. 426-429
    • Schoener, T.W.1
  • 37
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson, E.H. (1949). Measurement of diversity. Nature, 163, 688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 39
    • 0002471149 scopus 로고
    • The comparison of dendrograms by objective methods
    • Sokal, R.R. & Rohlf, F.J. (1962). The comparison of dendrograms by objective methods. Taxon, 11, 33-40.
    • (1962) Taxon , vol.11 , pp. 33-40
    • Sokal, R.R.1    Rohlf, F.J.2
  • 40
    • 0036263285 scopus 로고    scopus 로고
    • Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness
    • Spiers, A.J., Kahn, S.G., Bohannon, J., Travisano, M. & Rainey, P.B. (2002). Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness. Genetics, 161, 33-46.
    • (2002) Genetics , vol.161 , pp. 33-46
    • Spiers, A.J.1    Kahn, S.G.2    Bohannon, J.3    Travisano, M.4    Rainey, P.B.5
  • 41
    • 0141484352 scopus 로고    scopus 로고
    • Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose
    • Spiers, A.J., Bohannon, J., Gehrig, S.M. & Rainey, P.B. (2003). Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose. Mol. Microbiol., 50, 15-27.
    • (2003) Mol. Microbiol. , vol.50 , pp. 15-27
    • Spiers, A.J.1    Bohannon, J.2    Gehrig, S.M.3    Rainey, P.B.4
  • 42
    • 0021538333 scopus 로고
    • Coevolution in ecosystems - Red Queen evolution or stasis
    • Stenseth, N.C. & Maynard-Smith, J. (1984). Coevolution in ecosystems - Red Queen evolution or stasis. Evolution, 38, 870-880.
    • (1984) Evolution , vol.38 , pp. 870-880
    • Stenseth, N.C.1    Maynard-Smith, J.2
  • 43
    • 72849122615 scopus 로고    scopus 로고
    • Community monopolization: local adaptation enhances priority effects in an evolving metacommunity
    • Urban, M.C. & De Meester, L. (2009). Community monopolization: local adaptation enhances priority effects in an evolving metacommunity. Proc. Biol. Sci., 276, 4129-4138.
    • (2009) Proc. Biol. Sci. , vol.276 , pp. 4129-4138
    • Urban, M.C.1    De Meester, L.2
  • 44
    • 0002027029 scopus 로고
    • A new evolutionary law
    • Van Valen, L. (1973). A new evolutionary law. Evol. Theory, 1, 1-30.
    • (1973) Evol. Theory , vol.1 , pp. 1-30
    • Van Valen, L.1
  • 45
    • 0000662083 scopus 로고
    • Evolution of species diversity in land communities
    • Whittaker, R.H. (1977). Evolution of species diversity in land communities. Evol. Biol., 10, 1-67.
    • (1977) Evol. Biol. , vol.10 , pp. 1-67
    • Whittaker, R.H.1
  • 46
    • 84931749053 scopus 로고    scopus 로고
    • Antagonistic coevolution limits population persistence of a virus in a thermally deteriorating environment
    • Zhang, Q.G. & Buckling, A. (2011). Antagonistic coevolution limits population persistence of a virus in a thermally deteriorating environment. Ecol. Lett., 14, 282-288.
    • (2011) Ecol. Lett. , vol.14 , pp. 282-288
    • Zhang, Q.G.1    Buckling, A.2
  • 47
    • 84862817066 scopus 로고    scopus 로고
    • The effect of a competitor on a model adaptive radiation
    • Zhang, Q.G., Ellis, R.J. & Godfray, H.C.J. (2012). The effect of a competitor on a model adaptive radiation. Evolution, 66, 1985-1990.
    • (2012) Evolution , vol.66 , pp. 1985-1990
    • Zhang, Q.G.1    Ellis, R.J.2    Godfray, H.C.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.