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Volumn 10, Issue 1, 2013, Pages 151-160

SuperQ: Computing supernetworks from quartets

Author keywords

consensus network; phylogenetic network; split network; supernetwork; Supertree

Indexed keywords

CONSENSUS NETWORKS; PHYLOGENETIC NETWORKS; SPLIT NETWORKS; SUPER-NETWORK; SUPERTREE;

EID: 84876552254     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2013.8     Document Type: Article
Times cited : (53)

References (36)
  • 1
    • 1642519173 scopus 로고    scopus 로고
    • A classification of consensus methods for phyloge-nies
    • D. Bryant, "A Classification of Consensus Methods for Phyloge-nies," BioConsensus, vol. 61, pp. 163-184, 2003.
    • (2003) BioConsensus , vol.61 , pp. 163-184
    • Bryant, D.1
  • 3
    • 21144444309 scopus 로고    scopus 로고
    • Consensus networks: A method for visualising incompatibilities in collections of trees
    • B. Holland and V. Moulton, "Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees," Proc. Workshop Algorithms in Bioinformatics (WABI), pp. 165-176, 2003.
    • (2003) Proc. Workshop Algorithms in Bioinformatics (WABI) , pp. 165-176
    • Holland, B.1    Moulton, V.2
  • 6
    • 15944415088 scopus 로고    scopus 로고
    • Visualizing conflicting evolutionary hypotheses in large collections of trees: Using consensus networks to study the origins of placentals and hexapods
    • DOI 10.1080/10635150590906055
    • B. Holland, F. Delsuc, and V. Moulton, "Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods," Systematic Biology, vol. 54, pp. 66-76, 2005. (Pubitemid 40441163)
    • (2005) Systematic Biology , vol.54 , Issue.1 , pp. 66-76
    • Holland, B.R.1    Delsuc, F.2    Moulton, V.3
  • 8
    • 67649536036 scopus 로고    scopus 로고
    • Species delimitation and phylogeny of new zealand plant species
    • article 111
    • H. Meudt, P. Lockhart, and D. Bryant, "Species Delimitation and Phylogeny of New Zealand Plant Species," BMC Evolutionary Biology, vol. 9, article 111, 2009.
    • (2009) BMC Evolutionary Biology , vol.9
    • Meudt, H.1    Lockhart, P.2    Bryant, D.3
  • 9
    • 80051792622 scopus 로고    scopus 로고
    • Let them fall where they may: Congruence analysis in massive phylogeneti-cally messy data sets
    • J. Leigh, K. Schliep, P. Lopez, and E. Bapteste, "Let Them Fall Where They May: Congruence Analysis in Massive Phylogeneti-cally Messy Data Sets," Molecular Biology and Evolution, vol. 28, pp. 2773-2785, 2011.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2773-2785
    • Leigh, J.1    Schliep, K.2    Lopez, P.3    Bapteste, E.4
  • 11
    • 58149239791 scopus 로고    scopus 로고
    • Filtered z-closure supernetworks for extracting and visualizing recurrent signal from incongruent gene trees
    • J. Whitfield, S. Cameron, D. Huson, and M. Steel, "Filtered Z-Closure Supernetworks for Extracting and Visualizing Recurrent Signal from Incongruent Gene Trees," Systematic Biology, vol. 57, pp. 939-947, 2008.
    • (2008) Systematic Biology , vol.57 , pp. 939-947
    • Whitfield, J.1    Cameron, S.2    Huson, D.3    Steel, M.4
  • 12
    • 33847324470 scopus 로고    scopus 로고
    • Imputing supertrees and supernetworks from quartets
    • B. Holland, G. Conner, K. Huber, and V. Moulton, "Imputing Supertrees and Supernetworks from Quartets," Systematic Biology, vol. 56, pp. 57-67, 2007.
    • (2007) Systematic Biology , vol.56 , pp. 57-67
    • Holland, B.1    Conner, G.2    Huber, K.3    Moulton, V.4
  • 13
    • 0026911267 scopus 로고
    • Split decomposition: A new and useful approach to phylogenetic analysis of distance data
    • H.-J. Bandelt and A. Dress, "Split Decomposition: A New and Useful Approach to Phylogenetic Analysis of Distance Data," Molecular Phylogenetics and Evolution, vol. 1, pp. 242-252, 1992.
    • (1992) Molecular Phylogenetics and Evolution , vol.1 , pp. 242-252
    • Bandelt, H.-J.1    Dress, A.2
  • 14
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • D. Huson and D. Bryant, "Application of Phylogenetic Networks in Evolutionary Studies," Molecular Biology and Evolution, vol. 23, pp. 254-267, 2006. (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 15
    • 33846785301 scopus 로고    scopus 로고
    • QNet: An agglomerative method for the construction of phylogenetic networks from weighted quartets
    • DOI 10.1093/molbev/msl180
    • S. Grünewald, K. Forslund, A. Dress, and V. Moulton, "QNet: An Agglomerative Method for the Construction of Phylogenetic Networks from Weighted Quartets," Molecular Biology and Evolution, vol. 24, pp. 532-538, 2007. (Pubitemid 46204385)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.2 , pp. 532-538
    • Grunewald, S.1    Forslund, K.2    Dress, A.3    Moulton, V.4
  • 16
    • 67349127662 scopus 로고    scopus 로고
    • Consistency of the qnet algorithm for generating planar split graphs from weighted quartets
    • S. Grünewald, V. Moulton, and A. Spillner, "Consistency of the QNet Algorithm for Generating Planar Split Graphs from Weighted Quartets," Discrete Applied Math., vol. 157, pp. 2325-2334, 2009.
    • (2009) Discrete Applied Math. , vol.157 , pp. 2325-2334
    • Grünewald, S.1    Moulton, V.2    Spillner, A.3
  • 17
    • 77951586581 scopus 로고    scopus 로고
    • Using data-display networks for exploratory data analysis in phylogenetic studies
    • D. Morrison, "Using Data-Display Networks for Exploratory Data Analysis in Phylogenetic Studies," Molecular Biology and Evolution, vol. 27, pp. 1044-1057, 2010.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 1044-1057
    • Morrison, D.1
  • 21
    • 0002074731 scopus 로고
    • The recovery of trees from measures of dissimilarity
    • F. Hodson et al., eds., Edinburgh Univ. Press
    • P. Buneman, "The Recovery of Trees from Measures of Dissimilarity," Mathematics in the Archaeological and Historical Sciences, F. Hodson et al., eds., Edinburgh Univ. Press, pp. 387-395, 1971.
    • (1971) Mathematics in the Archaeological and Historical Sciences , pp. 387-395
    • Buneman, P.1
  • 24
    • 34047267637 scopus 로고
    • A canonical decomposition theory for metrics on a finite set
    • H.-J. Bandelt and A. Dress, "A Canonical Decomposition Theory for Metrics on a Finite Set," Advances in Math., vol. 92, pp. 47-105, 1992.
    • (1992) Advances in Math. , vol.92 , pp. 47-105
    • Bandelt, H.-J.1    Dress, A.2
  • 26
    • 63049108007 scopus 로고    scopus 로고
    • The minimum evolution problem: Overview and classification
    • D. Catanzaro, "The Minimum Evolution Problem: Overview and Classification," Networks, vol. 53, pp. 112-125, 2009.
    • (2009) Networks , vol.53 , pp. 112-125
    • Catanzaro, D.1
  • 28
    • 52449147252 scopus 로고
    • The complexity of reconstructing trees from qualitative characters and subtrees
    • M. Steel, "The Complexity of Reconstructing Trees from Qualitative Characters and Subtrees," J. Classification, vol. 9, pp. 91-116, 1992.
    • (1992) J. Classification , vol.9 , pp. 91-116
    • Steel, M.1
  • 29
    • 0001996348 scopus 로고
    • The probabilities of rooted tree-shapes generated by random bifurcation
    • E. Harding, "The Probabilities of Rooted Tree-Shapes Generated by Random Bifurcation," Advances in Applied Probability, vol. 3, pp. 44-77, 1971.
    • (1971) Advances in Applied Probability , vol.3 , pp. 44-77
    • Harding, E.1
  • 30
    • 0001778604 scopus 로고
    • A mathematical theory of evolution, based on the conclusions of dr. j.c. willis, f.r.s
    • G. Yule, "A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J.C. Willis, F.R.S." Philosophical Trans. R. Soc. London, Series B, vol. 213, pp. 21-87, 1925.
    • (1925) Philosophical Trans. R. Soc. London, Series B , vol.213 , pp. 21-87
    • Yule, G.1
  • 31
    • 0002844544 scopus 로고
    • Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
    • B. Baum, "Combining Trees as a Way of Combining Data Sets for Phylogenetic Inference, and the Desirability of Combining Gene Trees," Taxon, vol. 41, pp. 3-10, 1992.
    • (1992) Taxon , vol.41 , pp. 3-10
    • Baum, B.1
  • 32
    • 0026822436 scopus 로고
    • Phylogenetic inference based on matrix representation of trees
    • M. Ragan, "Phylogenetic Inference Based on Matrix Representation of Trees," Molecular Phylogenetics and Evolution, vol. 1, pp. 53-58, 1992.
    • (1992) Molecular Phylogenetics and Evolution , vol.1 , pp. 53-58
    • Ragan, M.1
  • 33
    • 81855168112 scopus 로고    scopus 로고
    • A 10-gene phylogeny of solanum section herpystichum (solanaceae) and a comparison of phylogenetic methods
    • E. Tepe, F. Farruggia, and L. Bohs, "A 10-Gene Phylogeny of Solanum section Herpystichum (Solanaceae) and a Comparison of Phylogenetic Methods," Am. J. Botany, vol. 98, pp. 1356-1365, 2011.
    • (2011) Am. J. Botany , vol.98 , pp. 1356-1365
    • Tepe, E.1    Farruggia, F.2    Bohs, L.3
  • 34
    • 64749105282 scopus 로고    scopus 로고
    • A pleistocene intertribal allopolyploidization event precedes the species radiation of pachycladon (brassicaceae) in new zealand
    • S. Joly, P. Heenan, and P. Lockhart, "A Pleistocene Intertribal Allopolyploidization Event Precedes the Species Radiation of Pachycladon (Brassicaceae) in New Zealand," Molecular Phyloge-netics and Evolution, vol. 51, pp. 365-372, 2009.
    • (2009) Molecular Phyloge-netics and Evolution , vol.51 , pp. 365-372
    • Joly, S.1    Heenan, P.2    Lockhart, P.3
  • 35
    • 0034486766 scopus 로고    scopus 로고
    • Molecular phylogenetic relationships amongst Alternaria species and related fungi based upon analysis of nuclear ITS and mt SSU rDNA sequences
    • DOI 10.1017/S0953756200003002
    • B. Pryor and R. Gilbertson, "Molecular Phylogenetic Relationships Amongst Alternaria Species and Related Fungi Based upon Analysis of Nuclear ITS and mt SSU rDNA Sequences," Mycological Research, vol. 104, pp. 1312-1321, 2000. (Pubitemid 32102793)
    • (2000) Mycological Research , vol.104 , Issue.11 , pp. 1312-1321
    • Pryor, B.M.1    Gilbertson, R.L.2
  • 36
    • 1342333397 scopus 로고    scopus 로고
    • Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium
    • B. Pryor and D. Bigelow, "Molecular Characterization of Embellisia and Nimbya Species and their Relationship to Alternaria, Ulocladium and Stemphylium," Mycologia, vol. 95, pp. 1141-1154, 2003. (Pubitemid 38241676)
    • (2003) Mycologia , vol.95 , Issue.6 , pp. 1141-1154
    • Pryor, B.M.1    Bigelow, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.