Immunoglobulin genes of the turtles

Immunogenetics

Volumn 65, Issue 3, 2013, Pages 227-237

  Magadán Mompó, Susana ^c   Sánchez Espinel, Christian ^b   Gambón Deza, Francisco ^a  

^a HOSPITAL DO MEIXOEIRO   (Spain)

^b UNIVERSITY OF VIGO   (Spain)

^c Instituto Español de Oceanografía Subida a Radio Faro   (Spain)

Author keywords

Evolution; Immunoglobulin genes; Immunoglobulin phylogeny; Reptile immunity

Indexed keywords

IMMUNOGLOBULIN; IMMUNOGLOBULIN A; IMMUNOGLOBULIN CLASS; IMMUNOGLOBULIN D; IMMUNOGLOBULIN D2; IMMUNOGLOBULIN HEAVY CHAIN; IMMUNOGLOBULIN M; IMMUNOGLOBULIN Y; UNCLASSIFIED DRUG; IMMUNOGLOBULIN KAPPA CHAIN;

ANIMAL EXPERIMENT; ARTICLE; CHRYSEMYS PICTA BELLII; EUBLEPHARIS MACULARIUS; GENE LOCUS; GENOME; IMMUNOGLOBULIN GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PELODISCUS SINENSIS; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; TURTLE; AMINO ACID SEQUENCE; ANIMAL; BIRD; COMPARATIVE STUDY; EXON; GENETICS; IMMUNOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; REPTILE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPECIES DIFFERENTIATION;

AVES; CHRYSEMYS PICTA BELLII; EUBLEPHARIS MACULARIUS; PELODISCUS SINENSIS; REPTILIA; TESTUDINES;

AMINO ACID SEQUENCE; ANIMALS; BIRDS; EVOLUTION, MOLECULAR; EXONS; GENES, IMMUNOGLOBULIN; GENETIC SPECIATION; IMMUNOGLOBULIN A; IMMUNOGLOBULIN D; IMMUNOGLOBULIN HEAVY CHAINS; IMMUNOGLOBULIN KAPPA-CHAINS; IMMUNOGLOBULIN M; IMMUNOGLOBULINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REPTILES; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TURTLES;

MLCS; MLOWN;

EID: 84876466832     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-012-0672-7     Document Type: Article

References (32)

1. Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M et al (2010) A web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol 19(10):1-21
2. Chiari Y, Cahais V, Galtier N, Delsuc P (2012) Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria). BMC Biol 10:65
3. Deza FG, Espinel CS, Beneitez JV (2007) A novel IgA-like immunoglobulin in the reptile Eublepharis macularius. Dev Comp Immunol 31(6):596-605
4. Erickson GM, Rauhut OWM, Zhou Z, Turner AH, Inouye BD, Hu D et al (2009) Was dinosaurian physiology inherited by birds? Reconciling slow growth in archaeopteryx. PLoS One 4(10):e7390
5. Gambón Deza F, Sánchez Espinel C, Magadán Mompó S (2009) The immunoglobulin heavy chain locus in the reptile Anolis carolinensis. Mol Immunol 46(8-9):1679-1687
6. Gambón-Deza F, Espinel CS (2008) IgD in the reptile leopard gecko. Mol Immunol 45(12):3470-3476
7. Gambón-Deza F, Sánchez-Espinel C, Magadán- Mompó S (2009) The immunoglobulin heavy chain locus in the platypus (Ornithorhynchus anatinus). Mol Immunol 46(13):2515-2523
8. Gambón-Deza F, Sánchez-Espinel C, Mirete-Bachiller S, Magadán-Mompó S (2012) Snakes antibodies. Dev Comp Immunol 38(1):1-9
9. Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P et al (2005) Galaxy: A platform for interactive large-scale genome analysis. Genome Research 15:1451-1455
10. Goecks J, Nekrutenko A, Taylor J (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11(8):R86
11. Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27(2):221-224
12. Higgins DA, Warr GW (1993) Duck immunoglobulins: structure, functions and molecular genetics. Avian Pathol 22(2):211-236
13. Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV (2010) Genome evolution in Reptilia, the sister group of mammals. Annu Rev Genom Hum Genet 11:239-264
14. Lukoschek V, Scott Keogh J, Avise JC (2012) Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Syst Biol 61(1):22-43
15. Lundqvist ML, Middleton DL, Hazard S, Warr GW (2001) The immunoglobulin heavy chain locus of the duck. Genomic organization and expression of D, J, and C region genes. J Biol Chem 276(50):46729-46736
16. Lundqvist ML, Middleton DL, Radford C, Warr GW, Magor KE (2006) Immunoglobulins of the non-galliform birds: antibody expression and repertoire in the duck. Dev Comp Immunol 30(1-2):93-100
17. Magor KE, Higgins DA, Middleton DL, Warr GW (1994) One gene encodes the heavy chains for three different forms of IgY in the duck. J Immunol 153(12):5549-5555
18. Modesto S, Anderson J (2004) The phylogenetic definition of reptilia. Syst Biol 53(5):815-821
19. Nei M, Rooney A (2005) Concerted and birth-and-death evolution of multigene families. Annu Rev Genet 39:121-152
20. Paul WE (2008) Fundamental immunology. Lippincott, Philadelphia
21. Qin T, Ren L, Hu X, Guo Y, Fei J, Zhu Q et al (2008) Genomic organization of the immunoglobulin light chain gene loci in Xenopus tropicalis: evolutionary implications. Dev Comp Immunol 32(2):156-165
22. Shedlock A, Botka C, Zhao S, Shetty J, Zhang T, Liu J et al (2007) Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome. Proc Natl Acad Sci U S A 104(8):2767-2772
23. Solovyev V, Kosarev P, Seledsov I, Vorobyev D (2006) Automatic annotation of eukaryotic genes, pseudogenes and promoters. Genome Biol 7(Suppl 1):S10.1-S1012
24. Stanke M, Steinkamp R, Waack S, Morgenstern B (2004) AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res 32(Web Server issue):W309-W312
25. Steiger SS, Kuryshev VY, Stensmyr MC, Kempenaers B, Mueller JC (2009) A comparison of reptilian and avian olfactory receptor gene repertoires: species-specific expansion of group gamma genes in birds. BMC Genom 10:446
26. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739
27. Turchin A, Hsu E (1996) The generation of antibody diversity in the turtle. J Immunol 156(10):3797-3805
28. Wei Z, Wu Q, Ren L, Hu X, Guo Y, Warr GW et al (2009) Expression of IgM, IgD, and IgY in a reptile, Anolis carolinensis. J Immunol 183(6):3858-3864
29. Xu Z, Wang GL, Nie P (2009) IgM, IgD and IgY and their expression pattern in the Chinese soft-shelled turtle Pelodiscus sinensis. Mol Immunol 46(10):2124-2132
30. Yao H, Guo L, Fu Y, Borsuk LA, Wen TJ, Skibbe DS et al (2005) Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Mol Biol 57(3):445-460
31. Zhao Y, Rabbani H, Shimizu A, Hammarström L (2000) Mapping of the chicken immunoglobulin heavy-chain constant region gene locus reveals an inverted alpha gene upstream of a condensed upsilon gene. Immunology 101(3):348-353
32. Zhao Y, Pan-Hammarström Q, Yu S, Wertz N, Zhang X, Li N et al (2006) Identification of IgF, a hinge-region-containing Ig class, and IgD in Xenopus tropicalis. Proc Natl Acad Sci U S A 103(32):12087-12092