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Volumn 44, Issue 3, 2013, Pages 276-284

Copy number variations identified in the chicken using a 60K SNP BeadChip

Author keywords

60K SNP array; chicken genome; copy number variations; genetic variation

Indexed keywords

ANIMAL; ARTICLE; CHICKEN; CHROMOSOME; COMPARATIVE GENOMIC HYBRIDIZATION; COPY NUMBER VARIATION; DNA SEQUENCE; GENE LOCUS; GENETIC MARKER; GENETICS; GENOME; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84876462793     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/age.12009     Document Type: Article
Times cited : (37)

References (47)
  • 2
    • 34447569298 scopus 로고    scopus 로고
    • Copy number variants and genetic traits: Closer to the resolution of phenotypic to genotypic variability
    • Beckmann J.S., Estivill X., &, Antonarakis S.E., (2007) Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability. Nature Reviews Genetics 8, 639-46.
    • (2007) Nature Reviews Genetics , vol.8 , pp. 639-646
    • Beckmann, J.S.1    Estivill, X.2    Antonarakis, S.E.3
  • 4
    • 79961144450 scopus 로고    scopus 로고
    • Copy Number variation across European populations
    • Chen W.T., Hayward C., Wright A.F., et al,. (2011) Copy Number variation across European populations. PLoS ONE 6.
    • (2011) PLoS ONE , vol.6
    • Chen, W.T.1    Hayward, C.2    Wright, A.F.3
  • 6
    • 54049144653 scopus 로고    scopus 로고
    • Copy-number variations associated with neuropsychiatric conditions
    • Cook E.H. Jr, &, Scherer S.W., (2008) Copy-number variations associated with neuropsychiatric conditions. Nature 455, 919-23.
    • (2008) Nature , vol.455 , pp. 919-923
    • Cook, Jr.E.H.1    Scherer, S.W.2
  • 7
    • 34347354302 scopus 로고    scopus 로고
    • Mutational and selective effects on copy-number variants in the human genome
    • Cooper G.M., Nickerson D.A., &, Eichler E.E., (2007) Mutational and selective effects on copy-number variants in the human genome. Nature Genetics 39, S22-9.
    • (2007) Nature Genetics , vol.39
    • Cooper, G.M.1    Nickerson, D.A.2    Eichler, E.E.3
  • 10
    • 35649018206 scopus 로고    scopus 로고
    • Recurrent DNA copy number variation in the laboratory mouse
    • Egan C.M., Sridhar S., Wigler M., &, Hall I.M., (2007) Recurrent DNA copy number variation in the laboratory mouse. Nature Genetics 39, 1384-9.
    • (2007) Nature Genetics , vol.39 , pp. 1384-1389
    • Egan, C.M.1    Sridhar, S.2    Wigler, M.3    Hall, I.M.4
  • 16
    • 33846614650 scopus 로고    scopus 로고
    • A high-resolution map of segmental DNA copy number variation in the mouse genome
    • Graubert T.A., Cahan P., Edwin D., et al,. (2007) A high-resolution map of segmental DNA copy number variation in the mouse genome. PLoS Genetics 3, e3.
    • (2007) PLoS Genetics , vol.3
    • Graubert, T.A.1    Cahan, P.2    Edwin, D.3
  • 17
    • 43249112744 scopus 로고    scopus 로고
    • Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution
    • Griffin D., Robertson L., Tempest H., et al,. (2008) Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution. BMC Genomics 9, 168.
    • (2008) BMC Genomics , vol.9 , pp. 168
    • Griffin, D.1    Robertson, L.2    Tempest, H.3
  • 19
    • 42649117472 scopus 로고    scopus 로고
    • Distribution and functional impact of DNA copy number variation in the rat
    • Guryev V., Saar K., Adamovic T., et al,. (2008) Distribution and functional impact of DNA copy number variation in the rat. Nature Genetics 40, 538-45.
    • (2008) Nature Genetics , vol.40 , pp. 538-545
    • Guryev, V.1    Saar, K.2    Adamovic, T.3
  • 20
    • 79951849727 scopus 로고    scopus 로고
    • Genomic characteristics of cattle copy number variations
    • Hou Y., Liu G.E., Bickhart D.M., et al,. (2011) Genomic characteristics of cattle copy number variations. BMC Genomics 12, 127.
    • (2011) BMC Genomics , vol.12 , pp. 127
    • Hou, Y.1    Liu, G.E.2    Bickhart, D.M.3
  • 21
    • 84864521942 scopus 로고    scopus 로고
    • Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
    • Hou Y., Bickhart D.M., Hvinden M.L., et al,. (2012) Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array. BMC Genomics 13, 376.
    • (2012) BMC Genomics , vol.13 , pp. 376
    • Hou, Y.1    Bickhart, D.M.2    Hvinden, M.L.3
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D.W., Sherman B.T., &, Lempicki R.A., (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4, 44-57.
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • International Chicken Genome Sequencing Consortium
    • International Chicken Genome Sequencing Consortium (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695-716.
    • (2004) Nature , vol.432 , pp. 695-716
  • 25
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437, 1299-320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 26
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • International HapMap Consortium
    • International HapMap Consortium (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-61.
    • (2007) Nature , vol.449 , pp. 851-861
  • 27
    • 43049143055 scopus 로고    scopus 로고
    • Mapping and sequencing of structural variation from eight human genomes
    • Kidd J.M., Cooper G.M., Donahue W.F., et al,. (2008) Mapping and sequencing of structural variation from eight human genomes. Nature 453, 56-64.
    • (2008) Nature , vol.453 , pp. 56-64
    • Kidd, J.M.1    Cooper, G.M.2    Donahue, W.F.3
  • 30
    • 82955217261 scopus 로고    scopus 로고
    • A genome-wide SNP scan reveals novel loci for egg production and quality traits in White Leghorn and brown-egg dwarf layers
    • Liu W., Li D., Liu J., Chen S., Qu L., Zheng J., Xu G., &, Yang N., (2011) A genome-wide SNP scan reveals novel loci for egg production and quality traits in White Leghorn and brown-egg dwarf layers. PLoS ONE 6, e28600.
    • (2011) PLoS ONE , vol.6
    • Liu, W.1    Li, D.2    Liu, J.3    Chen, S.4    Qu, L.5    Zheng, J.6    Xu, G.7    Yang, N.8
  • 31
    • 61849144443 scopus 로고    scopus 로고
    • The genomic architecture of segmental duplications and associated copy number variants in dogs
    • Nicholas T.J., Cheng Z., Ventura M., Mealey K., Eichler E.E., &, Akey J.M., (2009) The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Research 19, 491-9.
    • (2009) Genome Research , vol.19 , pp. 491-499
    • Nicholas, T.J.1    Cheng, Z.2    Ventura, M.3    Mealey, K.4    Eichler, E.E.5    Akey, J.M.6
  • 32
    • 48949085489 scopus 로고    scopus 로고
    • A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep
    • Norris B.J., &, Whan V.A., (2008) A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep. Genome Research 18, 1282-93.
    • (2008) Genome Research , vol.18 , pp. 1282-1293
    • Norris, B.J.1    Whan, V.A.2
  • 35
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R., Ishikawa S., Fitch K.R., et al,. (2006) Global variation in copy number in the human genome. Nature 444, 444-54.
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1    Ishikawa, S.2    Fitch, K.R.3
  • 36
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • Sebat J., Lakshmi B., Troge J., et al,. (2004) Large-scale copy number polymorphism in the human genome. Science 305, 525-8.
    • (2004) Science , vol.305 , pp. 525-528
    • Sebat, J.1    Lakshmi, B.2    Troge, J.3
  • 39
    • 20044371978 scopus 로고    scopus 로고
    • Mapping segmental and sequence variations among laboratory mice using BAC array CGH
    • Snijders A.M., Nowak N.J., Huey B., et al,. (2005) Mapping segmental and sequence variations among laboratory mice using BAC array CGH. Genome Research 15, 302-11.
    • (2005) Genome Research , vol.15 , pp. 302-311
    • Snijders, A.M.1    Nowak, N.J.2    Huey, B.3
  • 40
    • 77950660808 scopus 로고    scopus 로고
    • Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
    • Volker M., Backstrom N., Skinner B.M., Langley E.J., Bunzey S.K., Ellegren H., &, Griffin D.K., (2010) Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Genome Research 20, 503-11.
    • (2010) Genome Research , vol.20 , pp. 503-511
    • Volker, M.1    Backstrom, N.2    Skinner, B.M.3    Langley, E.J.4    Bunzey, S.K.5    Ellegren, H.6    Griffin, D.K.7
  • 41
    • 34547630892 scopus 로고    scopus 로고
    • A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination
    • Wahlberg P., Stromstedt L., Tordoir X., et al,. (2007) A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination. Cytogenetic and Genome Research 117, 22-9.
    • (2007) Cytogenetic and Genome Research , vol.117 , pp. 22-29
    • Wahlberg, P.1    Stromstedt, L.2    Tordoir, X.3
  • 42
    • 35948984173 scopus 로고    scopus 로고
    • Penncnv: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    • Wang K., Li M., Hadley D., Liu R., Glessner J., Grant S.F., Hakonarson H., &, Bucan M., (2007) penncnv: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Research 17, 1665-74.
    • (2007) Genome Research , vol.17 , pp. 1665-1674
    • Wang, K.1    Li, M.2    Hadley, D.3    Liu, R.4    Glessner, J.5    Grant, S.F.6    Hakonarson, H.7    Bucan, M.8
  • 44
    • 84859753442 scopus 로고    scopus 로고
    • A genome-wide survey of copy number variation regions in various chicken breeds by array comparative genomic hybridization method
    • Wang Y., Gu X., Feng C., Song C., Hu X., &, Li N., (2012) A genome-wide survey of copy number variation regions in various chicken breeds by array comparative genomic hybridization method. Animal Genetics 43, 282-9.
    • (2012) Animal Genetics , vol.43 , pp. 282-289
    • Wang, Y.1    Gu, X.2    Feng, C.3    Song, C.4    Hu, X.5    Li, N.6
  • 45
    • 67651219230 scopus 로고    scopus 로고
    • Copy number variation in intron 1 of SOX5 causes the pea-comb phenotype in chickens
    • Wright D., Boije H., Meadows J.R., et al,. (2009) Copy number variation in intron 1 of SOX5 causes the pea-comb phenotype in chickens. PLoS Genetics 5, e1000512.
    • (2009) PLoS Genetics , vol.5
    • Wright, D.1    Boije, H.2    Meadows, J.R.3
  • 46
    • 75649134266 scopus 로고    scopus 로고
    • Quantitative real-time polymerase chain reaction for the verification of genomic imbalances detected by microarray-based comparative genomic hybridization
    • Yu S., Kielt M., Stegner A.L., Kibiryeva N., Bittel D.C., &, Cooley L.D., (2009) Quantitative real-time polymerase chain reaction for the verification of genomic imbalances detected by microarray-based comparative genomic hybridization. Genetic Testing and Molecular Biomarkers 13, 751-60.
    • (2009) Genetic Testing and Molecular Biomarkers , vol.13 , pp. 751-760
    • Yu, S.1    Kielt, M.2    Stegner, A.L.3    Kibiryeva, N.4    Bittel, D.C.5    Cooley, L.D.6
  • 47
    • 0020560516 scopus 로고
    • Characterization of the chicken vimentin gene: Single copy gene producing multiple mRNAs
    • Zehner Z.E., &, Paterson B.M., (1983) Characterization of the chicken vimentin gene: single copy gene producing multiple mRNAs. Proceedings of National Academy of Science USA 80, 911-5.
    • (1983) Proceedings of National Academy of Science USA , vol.80 , pp. 911-915
    • Zehner, Z.E.1    Paterson, B.M.2


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