Robust microarray production of freshly expressed proteins in a human milieu

Proteomics - Clinical Applications

Volumn 7, Issue 5-6, 2013, Pages 372-377

  Festa, Fernanda ^a   Rollins, Sean M ^b,c   Vattem, Krishna ^d   Hathaway, Margarita ^a   Lorenz, Phillip ^a   Mendoza, Eliseo A ^a   Yu, Xiaobo ^a   Qiu, Ji ^a   Kilmer, Greg ^d   Jensen, Penny ^d   Webb, Brian ^d   Ryan, Ed T ^b   Labaer, Joshua ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

^c FITCHBURG STATE UNIVERSITY   (United States)

^d Thermo Fisher Scientific   (United States)

Author keywords

Human Coupled IVT; In vitro transcription and translation; NAPPA; Protein microarray

Indexed keywords

ANTHRAX VACCINE; PROTEIN ANTIBODY;

ANTIGEN DETECTION; ARTICLE; BACILLUS ANTHRACIS; CONTROLLED STUDY; DRUG EXPOSURE; GENE EXPRESSION SYSTEM; HUMAN; HUMAN CELL; HUMAN COUPLED IVT; IMMUNE RESPONSE; IMMUNOASSAY; IN VITRO STUDY; IN VITRO TRANSCRIPTION TRANSLATION SYSTEM; INTERMETHOD COMPARISON; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN MICROARRAY; PROTEIN SYNTHESIS; RABBIT RETICULOCYTE LYSATE; REPRODUCIBILITY; SIGNAL DETECTION; VIBRIO CHOLERAE; WESTERN BLOTTING;

ANIMALS; BLOTTING, WESTERN; HUMANS; PROTEIN ARRAY ANALYSIS; PROTEIN BIOSYNTHESIS; PROTEINS; RABBITS; RETICULOCYTES;

MAMMALIA; ORYCTOLAGUS CUNICULUS;

EID: 84876461875     PISSN: 18628346     EISSN: 18628354     Source Type: Journal    
DOI: 10.1002/prca.201200063     Document Type: Article

References (34)

1. Carter, B. Z., Qiu, Y. H., Zhang, N., Coombes, K. R. et al., Expression of ARC (apoptosis repressor with caspase recruitment domain), an antiapoptotic protein, is strongly prognostic in AML. Blood 2011, 117, 780-787.
2. Han, X., Yamanouchi, G., Mori, T., Kang, J. H. et al., Monitoring protein kinase activity in cell lysates using a high-density peptide microarray. J. Biomol. Screen 2009, 14, 256-262.
3. Mendes, K. N., Nicorici, D., Cogdell, D., Tabus, I. et al., Analysis of signaling pathways in 90 cancer cell lines by protein lysate array. J. Proteome Res. 2007, 6, 2753-2767.
4. Quintas-Cardama, A., Qiu, Y. H., Post, S. M., Zhang, Y. et al., Reverse phase protein array profiling reveals distinct proteomic signatures associated with chronic myeloid leukemia progression and with chronic phase in the CD34-positive compartment. Cancer 2012. DOI: 10.1002/cncr.27568
5. Montor, W. R., Huang, J., Hu, Y., Hainsworth, E. et al., Genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays. Infect. Immun. 2009, 77, 4877-4886.
6. Nnedu, O. N., O'Leary, M. P., Mutua, D., Mutai, B. et al., Humoral immune responses to Plasmodium falciparum among HIV-1-infected Kenyan adults. Proteomics Clin. Appl. 2011, 5, 613-623.
7. Kunnath-Velayudhan, S., Salamon, H., Wang, H. Y., Davidow, A. L. et al., Dynamic antibody responses to the Mycobacterium tuberculosis proteome. Proc. Natl. Acad. Sci. USA 2010, 107, 14703-14708.
8. van der Vlag, J., Berden, J. H., Lupus nephritis: role of antinucleosome autoantibodies. Semin. Nephrol. 2011, 31, 376-389.
9. Scott, D. L., Wolfe, F., Huizinga, T. W., Rheumatoid arthritis. Lancet 2010, 376, 1094-1108.
10. Weber, M. S., Hemmer, B., Cepok, S., The role of antibodies in multiple sclerosis. Biochim. Biophys. Acta 2011, 1812, 239-245.
11. Nokoff, N. J., Rewers, M., Cree Green, M., The interplay of autoimmunity and insulin resistance in type 1 diabetes. Discov. Med. 2012, 13, 115-122.
12. Jaras, K., Anderson, K., Autoantibodies in cancer: prognostic biomarkers and immune activation. Expert Rev. Proteomics 2011, 8, 577-589.
13. Desmetz, C., Mange, A., Maudelonde, T., Solassol, J., Autoantibody signatures: progress and perspectives for early cancer detection. J. Cell Mol. Med. 2011, 15, 2013-2024.
14. Takeda, A., Shimada, H., Nakajima, K., Imaseki, H. et al., Monitoring of p53 autoantibodies after resection of colorectal cancer: relationship to operative curability. Eur. J. Surg. 2001, 167, 50-53.
15. Anderson, K. S., Sibani, S., Wallstrom, G., Qiu, J. et al., Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. J. Proteome Res. 2011, 10, 85-96.
16. Tomaino, B., Cappello, P., Capello, M., Fredolini, C. et al., Circulating autoantibodies to phosphorylated alpha-enolase are a hallmark of pancreatic cancer. J. Proteome Res. 2011, 10, 105-112.
17. Lebrun, S. J., Petchpud, W., Tolentino, M., Development of a protein microarray library and a system for rheumatoid-arthritis disease marker screening. Biotechnol. Appl. Biochem. 2005, 42, 151-155.
18. Zhu, H., Bilgin, M., Bangham, R., Hall, D. et al., Global analysis of protein activities using proteome chips. Science 2001, 293, 2101-2105.
19. Popescu, S. C., Popescu, G. V., Bachan, S., Zhang, Z. et al., Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. USA 2007, 104, 4730-4735.
20. Koopmans, M., de Bruin, E., Godeke, G. J., Friesema, I. et al., Profiling of humoral immune responses to influenza viruses by using protein microarray. Clin. Microbiol. Infect. 2012, 8, 797-807.
21. Ramani, S. R., Tom, I., Lewin-Koh, N., Wranik, B. et al., A secreted protein microarray platform for extracellular protein interaction discovery. Anal. Biochem. 2012, 420, 127-138.
22. Grabski, A. C., Advances in preparation of biological extracts for protein purification. Methods Enzymol. 2009, 463, 285-303.
23. Jackson, A. M., Boutell, J., Cooley, N., He, M., Cell-free protein synthesis for proteomics. Brief Funct. Genomic Proteomic. 2004, 2, 308-319.
24. Angenendt, P., Kreutzberger, J., Glokler, J., Hoheisel, J. D., Generation of high density protein microarrays by cell-free in situ expression of unpurified PCR products. Mol. Cell Proteomics 2006, 5, 1658-1666.
25. He, M., Stoevesandt, O., Palmer, E. A., Khan, F. et al., Printing protein arrays from DNA arrays. Nat. Methods 2008, 5, 175-177.
26. Goshima, N., Kawamura, Y., Fukumoto, A., Miura, A. et al., Human protein factory for converting the transcriptome into an in vitro-expressed proteome. Nat. Methods 2008, 5, 1011-1017.
27. Ramachandran, N., Hainsworth, E., Bhullar, B., Eisenstein, S. et al., Self-assembling protein microarrays. Science 2004, 305, 86-90.
28. He, M., Taussig, M. J., Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method). Nucleic Acids Res. 2001, 29, E73-73.
29. Ramachandran, N., Raphael, J. V., Hainsworth, E., Demirkan, G. et al., Next-generation high-density self-assembling functional protein arrays. Nat. Methods 2008, 5, 535-538.
30. Spirin, A. S., High-throughput cell-free systems for synthesis of functionally active proteins. Trends Biotechnol. 2004, 22, 538-545.
31. Ramachandran, N., Anderson, K. S., Raphael, J. V., Hainsworth, E. et al., Tracking humoral responses using self-assembling protein microarrays. Proteomics Clin. Appl. 2008, 2, 1518-1527.
32. Cormier, C. Y., Park, J. G., Fiacco, M., Steel, J. et al., PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. J. Struct. Funct. Genomics 2011, 12, 55-62.
33. Miersch, S., LaBaer, J., Nucleic Acid programmable protein arrays: versatile tools for array-based functional protein studies. Curr. Protoc. Protein Sci. 2011, Chapter 27, Unit 27.2.
34. Office of Cancer Clinical Proteomics Research Antibody Portal, antibodies.cancer.gov/apps/site/default