-
1
-
-
71449116162
-
Biological diversity of prokaryotic type IV secretion systems
-
Alvarez-Martinez CE, Christie PJ (2009) Biological diversity of prokaryotic type IV secretion systems. Microbiol Mol Biol Rev 73: 775-808
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, pp. 775-808
-
-
Alvarez-Martinez, C.E.1
Christie, P.J.2
-
2
-
-
9644272811
-
Energetic components VirD4, VirB11 and VirB4 mediate early DNA transfer reactions required for bacterial type IV secretion
-
Atmakuri K, Cascales E, Christie PJ (2004) Energetic components VirD4, VirB11 and VirB4 mediate early DNA transfer reactions required for bacterial type IV secretion. Mol Microbiol 54: 1199-1211
-
(2004)
Mol Microbiol
, vol.54
, pp. 1199-1211
-
-
Atmakuri, K.1
Cascales, E.2
Christie, P.J.3
-
3
-
-
79851508025
-
Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes
-
Birmanns S, Rusu M, Wriggers W (2011) Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes. J Struct Biol 173: 428-435
-
(2011)
J Struct Biol
, vol.173
, pp. 428-435
-
-
Birmanns, S.1
Rusu, M.2
Wriggers, W.3
-
4
-
-
10344225117
-
Agrobacterium VirB10, an ATP energy sensor required for type IV secretion
-
Cascales E, Christie PJ (2004a) Agrobacterium VirB10, an ATP energy sensor required for type IV secretion. Proc Natl Acad Sci USA 101: 17228-17233
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17228-17233
-
-
Cascales, E.1
Christie, P.J.2
-
5
-
-
2442682800
-
Definition of a bacterial type IV secretion pathway for a DNA substrate
-
Cascales E, Christie PJ (2004b) Definition of a bacterial type IV secretion pathway for a DNA substrate. Science 304: 1170-1173
-
(2004)
Science
, vol.304
, pp. 1170-1173
-
-
Cascales, E.1
Christie, P.J.2
-
6
-
-
72949109740
-
Structure of the outer membrane complex of a type IV secretion system
-
Chandran V, Fronzes R, Duquerroy S, Cronin N, Navaza J, Waksman G (2009) Structure of the outer membrane complex of a type IV secretion system. Nature 462: 1011-1015
-
(2009)
Nature
, vol.462
, pp. 1011-1015
-
-
Chandran, V.1
Fronzes, R.2
Duquerroy, S.3
Cronin, N.4
Navaza, J.5
Waksman, G.6
-
7
-
-
0027938423
-
Translocation of DNA across bacterial membranes
-
Dreiseikelmann B (1994) Translocation of DNA across bacterial membranes. Microbiol Rev 58: 293-316
-
(1994)
Microbiol Rev
, vol.58
, pp. 293-316
-
-
Dreiseikelmann, B.1
-
8
-
-
58149375801
-
Structure of a type IV secretion system core complex
-
Fronzes R, Schafer E, Wang L, Saibil HR, Orlova EV, Waksman G (2009) Structure of a type IV secretion system core complex. Science 323: 266-268
-
(2009)
Science
, vol.323
, pp. 266-268
-
-
Fronzes, R.1
Schafer, E.2
Wang, L.3
Saibil, H.R.4
Orlova, E.V.5
Waksman, G.6
-
9
-
-
0035252083
-
The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase
-
Gomis-Ruth FX, Moncalian G, Perez-Luque R, Gonzalez A, Cabezon E, de la Cruz F, Coll M (2001) The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature 409: 637-641
-
(2001)
Nature
, vol.409
, pp. 637-641
-
-
Gomis-Ruth, F.X.1
Moncalian, G.2
Perez-Luque, R.3
Gonzalez, A.4
Cabezon, E.5
De La Cruz, F.6
Coll, M.7
-
10
-
-
33746996522
-
A large domain swap in the VirB11 ATPase of Brucella suis leaves the hexameric assembly intact
-
Hare S, Bayliss R, Baron C, Waksman G (2006) A large domain swap in the VirB11 ATPase of Brucella suis leaves the hexameric assembly intact. J Mol Biol 360: 56-66
-
(2006)
J Mol Biol
, vol.360
, pp. 56-66
-
-
Hare, S.1
Bayliss, R.2
Baron, C.3
Waksman, G.4
-
11
-
-
0035783171
-
Bsoft: Image and molecular processing in electron microscopy
-
Heymann JB (2001) Bsoft: image and molecular processing in electron microscopy. J Struct Biol 133: 156-169
-
(2001)
J Struct Biol
, vol.133
, pp. 156-169
-
-
Heymann, J.B.1
-
12
-
-
33845336533
-
Bsoft: Image processing and molecular modeling for electron microscopy
-
Heymann JB, Belnap DM (2007) Bsoft: image processing and molecular modeling for electron microscopy. J Struct Biol 157: 3-18
-
(2007)
J Struct Biol
, vol.157
, pp. 3-18
-
-
Heymann, J.B.1
Belnap, D.M.2
-
13
-
-
58449091300
-
Agrobacterium VirB10 domain requirements for type IV secretion and T pilus biogenesis
-
Jakubowski SJ, Kerr JE, Garza I, Krishnamoorthy V, Bayliss R, Waksman G, Christie PJ (2009) Agrobacterium VirB10 domain requirements for type IV secretion and T pilus biogenesis. Mol Microbiol 71 : 779-794
-
(2009)
Mol Microbiol
, vol.71
, pp. 779-794
-
-
Jakubowski, S.J.1
Kerr, J.E.2
Garza, I.3
Krishnamoorthy, V.4
Bayliss, R.5
Waksman, G.6
Christie, P.J.7
-
14
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292: 195-202
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
15
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
Kelley LA, Sternberg MJ (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371
-
(2009)
Nat Protoc
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
16
-
-
0028315917
-
Common mechanisms in bacterial conjugation and Ti-mediated T-DNA transfer to plant cells
-
Lessl M, Lanka E (1994) Common mechanisms in bacterial conjugation and Ti-mediated T-DNA transfer to plant cells. Cell 77: 321-324
-
(1994)
Cell
, vol.77
, pp. 321-324
-
-
Lessl, M.1
Lanka, E.2
-
17
-
-
0042838290
-
Conjugative coupling proteins interact with cognate and heterologous VirB10-like proteins while exhibiting specificity for cognate relaxosomes
-
Llosa M, Zunzunegui S, de la Cruz F (2003) Conjugative coupling proteins interact with cognate and heterologous VirB10-like proteins while exhibiting specificity for cognate relaxosomes. Proc Natl Acad Sci USA 100: 10465-10470
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 10465-10470
-
-
Llosa, M.1
Zunzunegui, S.2
De La Cruz, F.3
-
18
-
-
33751179227
-
Agrobacterium tumefaciens and plant cell interactions and activities required for interkingdom macromolecular transfer
-
McCullen CA, Binns AN (2006) Agrobacterium tumefaciens and plant cell interactions and activities required for interkingdom macromolecular transfer. Annu Rev Cell Dev Biol 22: 101-127
-
(2006)
Annu Rev Cell Dev Biol
, vol.22
, pp. 101-127
-
-
McCullen, C.A.1
Binns, A.N.2
-
19
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell JA, Grigorieff N (2003) Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol 142: 334-347
-
(2003)
J Struct Biol
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
20
-
-
84857033345
-
Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps
-
Pandurangan AP, Topf M (2012) Finding rigid bodies in protein structures: application to flexible fitting into cryoEM maps. J Struct Biol 177: 520-531
-
(2012)
J Struct Biol
, vol.177
, pp. 520-531
-
-
Pandurangan, A.P.1
Topf, M.2
-
21
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
22
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
23
-
-
34248647893
-
TonB-dependent energy transduction between outer and cytoplasmic membranes
-
Postle K, Larsen RA (2007) TonB-dependent energy transduction between outer and cytoplasmic membranes. Biometals 20: 453-465
-
(2007)
Biometals
, vol.20
, pp. 453-465
-
-
Postle, K.1
Larsen, R.A.2
-
24
-
-
78651411166
-
Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor
-
Rasmussen SG, Choi HJ, Fung JJ, Pardon E, Casarosa P, Chae PS, Devree BT, Rosenbaum DM, Thian FS, Kobilka TS, Schnapp A, Konetzki I, Sunahara RK, Gellman H, Pautsch A, Steyaert J, Weis WI, Kobilka BK (2011) Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor. Nature 469: 175-180
-
(2011)
Nature
, vol.469
, pp. 175-180
-
-
Rasmussen, S.G.1
Choi, H.J.2
Fung, J.J.3
Pardon, E.4
Casarosa, P.5
Chae, P.S.6
Devree, B.T.7
Rosenbaum, D.M.8
Thian, F.S.9
Kobilka, T.S.10
Schnapp, A.11
Konetzki, I.12
Sunahara, R.K.13
Gellman, H.14
Pautsch, A.15
Steyaert, J.16
Weis, W.I.17
Kobilka, B.K.18
-
25
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5: 725-738
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
26
-
-
0038414540
-
VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion
-
Savvides SN, Yeo HJ, Beck MR, Blaesing F, Lurz R, Lanka E, Buhrdorf R, Fischer W, Haas R, Waksman G (2003) VirB11 ATPases are dynamic hexameric assemblies: new insights into bacterial type IV secretion. EMBO J 22: 1969-1980
-
(2003)
EMBO J
, vol.22
, pp. 1969-1980
-
-
Savvides, S.N.1
Yeo, H.J.2
Beck, M.R.3
Blaesing, F.4
Lurz, R.5
Lanka, E.6
Buhrdorf, R.7
Fischer, W.8
Haas, R.9
Waksman, G.10
-
27
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Soding J (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics 21 : 951-960
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Soding, J.1
-
28
-
-
79953725979
-
Architecture of the Helicobacter pylori Cag-type IV secretion system
-
Terradot L, Waksman G (2011) Architecture of the Helicobacter pylori Cag-type IV secretion system. FEBS J 278: 1213-1222
-
(2011)
FEBS J
, vol.278
, pp. 1213-1222
-
-
Terradot, L.1
Waksman, G.2
-
29
-
-
38949092920
-
Protein structure fitting and refinement guided by cryo-EM density
-
Topf M, Lasker K, Webb B, Wolfson H, Chiu W, Sali A (2008) Protein structure fitting and refinement guided by cryo-EM density. Structure 16: 295-307
-
(2008)
Structure
, vol.16
, pp. 295-307
-
-
Topf, M.1
Lasker, K.2
Webb, B.3
Wolfson, H.4
Chiu, W.5
Sali, A.6
-
30
-
-
20244379996
-
Single-particle electron cryo-microscopy: Towards atomic resolution
-
van Heel M, Gowen B, Matadeen R, Orlova EV, Finn R, Pape T, Cohen D, Stark H, Schmidt R, Schatz M, Patwardhan A (2000) Single-particle electron cryo-microscopy: towards atomic resolution. Q Rev Biophys 33: 307-369
-
(2000)
Q Rev Biophys
, vol.33
, pp. 307-369
-
-
Van Heel, M.1
Gowen, B.2
Matadeen, R.3
Orlova, E.V.4
Finn, R.5
Pape, T.6
Cohen, D.7
Stark, H.8
Schmidt, R.9
Schatz, M.10
Patwardhan, A.11
-
31
-
-
78649335183
-
Molecular architecture of bacterial type IV secretion systems
-
Waksman G, Fronzes R (2010) Molecular architecture of bacterial type IV secretion systems. Trends Biochem Sci 35: 691-698
-
(2010)
Trends Biochem Sci
, vol.35
, pp. 691-698
-
-
Waksman, G.1
Fronzes, R.2
-
32
-
-
77957116092
-
Type IV secretion systems: Versatility and diversity in function
-
Wallden K, Rivera-Calzada A, Waksman G (2010) Type IV secretion systems: versatility and diversity in function. Cell Microbiol 12: 1203-1212
-
(2010)
Cell Microbiol
, vol.12
, pp. 1203-1212
-
-
Wallden, K.1
Rivera-Calzada, A.2
Waksman, G.3
-
33
-
-
84863923408
-
Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system
-
Wallden K, Williams R, Yan J, Lian PW, Wang L, Thalassinos K, Orlova EV, Waksman G (2012) Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system. Proc Natl Acad Sci USA 109: 11348-11353
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 11348-11353
-
-
Wallden, K.1
Williams, R.2
Yan, J.3
Lian, P.W.4
Wang, L.5
Thalassinos, K.6
Orlova, E.V.7
Waksman, G.8
-
34
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9: 40
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
|