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Volumn 11, Issue 21, 2012, Pages 3999-4004

Analysis of codon contribution between the Pestivirus genus and their natural hosts

Author keywords

Genetic characteristic; Hosts; Mutation pressure; Pestivirus; The overall codon usage; Translation selection

Indexed keywords


EID: 84876310897     PISSN: 16805593     EISSN: 1993601X     Source Type: Journal    
DOI: 10.3923/javaa.2012.3999.4004     Document Type: Article
Times cited : (3)

References (35)
  • 1
    • 38849083985 scopus 로고    scopus 로고
    • Hepatitis A virus mutant spectra under the selective pressure of monoclonal antibodies: Codon usage constraints limit capsid variability
    • Aragones, L., A. Bosch and R.M. Pinto, 2008. Hepatitis A virus mutant spectra under the selective pressure of monoclonal antibodies: Codon usage constraints limit capsid variability. J. Virol, 82: 1688-1700.
    • (2008) J. Virol , vol.82 , pp. 1688-1700
    • Aragones, L.1    Bosch, A.2    Pinto, R.M.3
  • 2
    • 77950421701 scopus 로고    scopus 로고
    • Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid
    • No 3. 10. 1371/journal. ppat. l000797
    • Aragones, L., S. Guix, E. Ribes, A. Bosch and R.M. Pinto, 2010. Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid. PLoS Pathogens, Vol. 6, No. 3. 10.1371/journal.ppat.l000797.
    • (2010) PLoS Pathogens , vol.6
    • Aragones, L.1    Guix, S.2    Ribes, E.3    Bosch, A.4    Pinto, R.M.5
  • 3
    • 73149095830 scopus 로고    scopus 로고
    • Viral adaptation to host: A proteome-based analysis of codon usage and amino acid preferences
    • 10 1038/msb. 2009
    • Bahir, I, M. Fromer, Y. Prat and M. Linial, 2009. Viral adaptation to host: A proteome-based analysis of codon usage and amino acid preferences. Mol. Syst. Biol, Vol. 5. 10.1038/msb.2009.71.
    • (2009) Mol. Syst. Biol , vol.5 , pp. 71
    • Bahir, I.1    Fromer, M.2    Prat, Y.3    Linial, M.4
  • 5
    • 0017165823 scopus 로고
    • Natural infection of pigs with bovine viral diarrhea virus and its differential diagnosis from hog cholera
    • Carbrey, E.A., W.C. Stewart, J.I. Kresse and M.L. Snyder, 1976. Natural infection of pigs with bovine viral diarrhea virus and its differential diagnosis from hog cholera. J. Am. Vet. Med. Assoc, 169: 1217-1219.
    • (1976) J. Am. Vet. Med. Assoc , vol.169 , pp. 1217-1219
    • Carbrey, E.A.1    Stewart, W.C.2    Kresse, J.I.3    Snyder, M.L.4
  • 7
    • 33750011953 scopus 로고    scopus 로고
    • The evolution of biased codon and amino acid usage in nematode genomes
    • Cutter, A.D., J.D. Wasmuth and M.L. Blaxter, 2006. The evolution of biased codon and amino acid usage in nematode genomes. Mol. Biol. Evol., 23: 2303-2315.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2303-2315
    • Cutter, A.D.1    Wasmuth, J.D.2    Blaxter, M.L.3
  • 8
    • 0027221640 scopus 로고
    • Rates of spontaneous mutation among RNA viruses
    • Drake, J.W., 1993. Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA., 90: 4171-4175.
    • (1993) Proc. Natl. Acad. Sci. USA. , vol.90 , pp. 4171-4175
    • Drake, J.W.1
  • 9
    • 0035035673 scopus 로고    scopus 로고
    • The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution
    • Duret, L. and L.D. Hurst 2001. The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution. Mol. Biol. Evol., 18: 757-762.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 757-762
    • Duret, L.1    Hurst, L.D.2
  • 11
    • 0025074342 scopus 로고
    • Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: Data and hypotheses
    • Karlin, S., B.E. Blaisdell and G.A. Schachtel, 1990. Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: Data and hypotheses. J. Virol., 64: 4264-4273.
    • (1990) J. Virol. , vol.64 , pp. 4264-4273
    • Karlin, S.1    Blaisdell, B.E.2    Schachtel, G.A.3
  • 12
    • 0028221062 scopus 로고
    • Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?
    • Karlin, S., W. Doerfler and L.R. Cardon, 1994. Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?. J. Virol, 68: 2889-2897.
    • (1994) J. Virol , vol.68 , pp. 2889-2897
    • Karlin, S.1    Doerfler, W.2    Cardon, L.R.3
  • 14
    • 0035234558 scopus 로고    scopus 로고
    • Rewiring the keyboard: Evolvability of the genetic code
    • Knight, R.D., S.J. Freeland and L.F. Landweber, 2001. Rewiring the keyboard: Evolvability of the genetic code. Nat. Rev. Genet, 2: 49-58.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 49-58
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 15
    • 0034643326 scopus 로고    scopus 로고
    • Incidence and control of CSF in wild boar inEurope
    • Laddomada, A., 2000. Incidence and control of CSF in wild boar inEurope. Vet. Microbiol, 73: 121-130.
    • (2000) Vet. Microbiol , vol.73 , pp. 121-130
    • Laddomada, A.1
  • 16
    • 0025388929 scopus 로고
    • Ruminant pestivirus infection in pigs
    • Liess, B. and V. Moennig, 1990. Ruminant pestivirus infection in pigs. Rev. Sci. Tech., 9: 151-161.
    • (1990) Rev. Sci. Tech. , vol.9 , pp. 151-161
    • Liess, B.1    Moennig, V.2
  • 17
    • 77954034694 scopus 로고    scopus 로고
    • Analysis of synonymous codon usage in porcine reproductive and respiratory syndrome virus
    • Liu, Y.S., J.H. Zhou, H.T. Chen, L.N. Ma, Y.Z. Ding, M. Wang and J. Zhang, 2010. Analysis of synonymous codon usage in porcine reproductive and respiratory syndrome virus. Infect. Genet. Evol, 10: 797-803.
    • (2010) Infect. Genet. Evol , vol.10 , pp. 797-803
    • Liu, Y.S.1    Zhou, J.H.2    Chen, H.T.3    Ma, L.N.4    Ding, Y.Z.5    Wang, M.6    Zhang, J.7
  • 18
    • 79956307272 scopus 로고    scopus 로고
    • The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern
    • Liu, Y.S., J.H. Zhou, H.T. Chen, L.N. Ma, Z. Pejsak, Y.Z. Ding and J. Zhang, 2011. The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern. Infect. Genet. Evol, 11: 1168-1173.
    • (2011) Infect. Genet. Evol , vol.11 , pp. 1168-1173
    • Liu, Y.S.1    Zhou, J.H.2    Chen, H.T.3    Ma, L.N.4    Pejsak, Z.5    Ding, Y.Z.6    Zhang, J.7
  • 19
    • 0014277926 scopus 로고
    • Propagation and transmission of hog cholear virus in nonporcine hosts
    • Loan, R.W. and M.M. Storm, 1968. Propagation and transmission of hog cholear virus in nonporcine hosts. Am. J. Vet. Res., 29: 807-811.
    • (1968) Am. J. Vet. Res. , vol.29 , pp. 807-811
    • Loan, R.W.1    Storm, M.M.2
  • 20
    • 0342614926 scopus 로고    scopus 로고
    • Codon usage tabulated from international DNA sequence databases: Status for the year 2000
    • Nakamura, Y., T. Gojobori and T. Ikemura, 2000. Codon usage tabulated from international DNA sequence databases: Status for the year 2000. Nucleic Acids Res., 28: 292-292.
    • (2000) Nucleic Acids Res , vol.28 , pp. 292-1292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 22
    • 4344647504 scopus 로고    scopus 로고
    • Tissue-specific codon usage and the expression of human genes
    • Plotkin, J.B., H. Robins and A.J. Levme, 2004. Tissue-specific codon usage and the expression of human genes. Proc. Natl. Acad. Sci. USA., 101: 12588-12591.
    • (2004) Proc. Natl. Acad. Sci. USA. , vol.101 , pp. 12588-12591
    • Plotkin, J.B.1    Robins, H.2    Levme, A.J.3
  • 23
    • 0026487270 scopus 로고
    • Characterisation of p20 gene sequences from a border disease-like pestivirus isolated from pigs
    • Roehe, P.M., M.J. Woodward and S. Edwards, 1992. Characterisation of p20 gene sequences from a border disease-like pestivirus isolated from pigs. Vet. Microbiol, 33: 231-238.
    • (1992) Vet. Microbiol , vol.33 , pp. 231-238
    • Roehe, P.M.1    Woodward, M.J.2    Edwards, S.3
  • 24
    • 0037213938 scopus 로고    scopus 로고
    • Genome variability and capsid structural constraints of hepatitis A virus
    • Sanchez, G., A. Bosch and R.M. Pinto, 2003. Genome variability and capsid structural constraints of hepatitis A virus. J. Virol, 77: 452-459.
    • (2003) J. Virol , vol.77 , pp. 452-459
    • Sanchez, G.1    Bosch, A.2    Pinto, R.M.3
  • 25
    • 1642513699 scopus 로고    scopus 로고
    • Driving change: The evolution of alternative genetic codes
    • Santos, M.A., G. Moura, S.E. Massey and M.F. Tuite, 2004. Driving change: The evolution of alternative genetic codes. Trends Genet, 20: 95-102.
    • (2004) Trends Genet , vol.20 , pp. 95-102
    • Santos, M.A.1    Moura, G.2    Massey, S.E.3    Tuite, M.F.4
  • 26
    • 0023046874 scopus 로고
    • Codon usage in yeast cluster-analysis clearly differentiates highly and lowly expressed genes
    • Sharp, P.M., T.M.F. Tuohy and K.R. Mosurski, 1986. Codon usage in yeast cluster-analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res., 14: 5125-5143.
    • (1986) Nucleic Acids Res , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.F.2    Mosurski, K.R.3
  • 27
    • 0024390887 scopus 로고
    • Experimental infection of pregnant goats with swine fever virus
    • Shimizu, M. and T. Kumagai, 1989. Experimental infection of pregnant goats with swine fever virus. Vet. Microbiol, 20: 207-214.
    • (1989) Vet. Microbiol , vol.20 , pp. 207-214
    • Shimizu, M.1    Kumagai, T.2
  • 29
    • 0024085777 scopus 로고    scopus 로고
    • Natural infections of pigs with bovine viral diarrhoea virus associated with signs resembling swine fever
    • Terpstra, C. and G. Wensvoort, 1998. Natural infections of pigs with bovine viral diarrhoea virus associated with signs resembling swine fever. Res. Vet. Sci., 45: 137-142.
    • (1998) Res. Vet. Sci. , vol.45 , pp. 137-142
    • Terpstra, C.1    Wensvoort, G.2
  • 30
    • 33746490608 scopus 로고    scopus 로고
    • Pestiviruses in wild animals
    • Vilcek, S. and P.F. Nettleton, 2006. Pestiviruses in wild animals. Vet. Microbiol, 116: 1-12.
    • (2006) Vet. Microbiol , vol.116 , pp. 1-12
    • Vilcek, S.1    Nettleton, P.F.2
  • 31
    • 77956395148 scopus 로고    scopus 로고
    • Codon usage bias and the evolution of influenza A viruses. Codon usage biases of influenza virus
    • 10.1186/ 1471-2148-10-253
    • Wong, E.H., D.K. Smith, R. Rabadan, M. Peiris and L.L. Poon, 2010. Codon usage bias and the evolution of influenza A viruses. Codon usage biases of influenza virus. BMC Evol Biol, Vol: 10, 10.1186/ 1471-2148-10-253.
    • (2010) BMC Evol Biol , vol.10
    • Wong, E.H.1    Smith, D.K.2    Rabadan, R.3    Peiris, M.4    Poon, L.L.5
  • 32
    • 78649396758 scopus 로고    scopus 로고
    • Codon optimization of human parvovirus B19 capsid genes greatly increases their expression in nonpermissive cells
    • Zhi, N, Z. Wan, X. Liu, S. Wong, D.J. Kim, N.S. Young and S. Kajigaya, 2010. Codon optimization of human parvovirus B19 capsid genes greatly increases their expression in nonpermissive cells. J. Virol, 84: 13059-13062.
    • (2010) J. Virol , vol.84 , pp. 13059-13062
    • Zhi, N.1    Wan, Z.2    Liu, X.3    Wong, S.4    Kim, D.J.5    Young, N.S.6    Kajigaya, S.7
  • 33
    • 0345188623 scopus 로고    scopus 로고
    • Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability
    • Zhou, J., W.J. Liu, S.W. Peng, X.Y. Sun and I. Frazer, 1999. Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability. J. Virol, 73: 4972-4982.
    • (1999) J. Virol , vol.73 , pp. 4972-4982
    • Zhou, J.1    Liu, W.J.2    Peng, S.W.3    Sun, X.Y.4    Frazer, I.5
  • 34
    • 77955486401 scopus 로고    scopus 로고
    • Analysis of synonymous codon usage in foot-and-mouth disease virus
    • Zhou, J.H., J. Zhang, H.T. Chen, L.N. Ma and Y.S. Liu, 2010. Analysis of synonymous codon usage in foot-and-mouth disease virus. Vet. Res. Commun, 34: 393-404.
    • (2010) Vet. Res. Commun , vol.34 , pp. 393-404
    • Zhou, J.H.1    Zhang, J.2    Chen, H.T.3    Ma, L.N.4    Liu, Y.S.5
  • 35
    • 84863720369 scopus 로고    scopus 로고
    • Comparative the codon usage between the three main viruses in pestivirus genus and their natural susceptible livestock
    • Zhou, J.H., Z.L. Gao, J. Zhang, H.T. Chen and Z. Pejsak et al., 2012. Comparative the codon usage between the three main viruses in pestivirus genus and their natural susceptible livestock. Virus Genes, 44: 475-481.
    • (2012) Virus Genes , vol.44 , pp. 475-481
    • Zhou, J.H.1    Gao, Z.L.2    Zhang, J.3    Chen, H.T.4    Pejsak, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.