-
1
-
-
0004187047
-
-
Cambridge, MA: Harvard University Press
-
Avise, J. (2000). Phylogeography. Cambridge, MA: Harvard University Press.
-
(2000)
Phylogeography
-
-
Avise, J.1
-
2
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B Stat. Methodol. 57, 289-300.
-
(1995)
J. R. Stat. Soc. Series B Stat. Methodol.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
3
-
-
77953123927
-
Principal-component analysis for assessment of population stratification in mitochondrial medical genetics
-
Biffi, A., Anderson, C. D., Nalls, M. A., Rahman, R., Sonni, A., Cortellini, L., et al. (2010). Principal-component analysis for assessment of population stratification in mitochondrial medical genetics. Am. J. Hum. Genet. 86, 904-917.
-
(2010)
Am. J. Hum. Genet.
, vol.86
, pp. 904-917
-
-
Biffi, A.1
Anderson, C.D.2
Nalls, M.A.3
Rahman, R.4
Sonni, A.5
Cortellini, L.6
-
4
-
-
83755221084
-
Accounting for population stratification in practice: a comparison of the main strategies dedicated to genome-wide association studies
-
doi:10.1371/journal.pone.0028845
-
Bouaziz, M., Ambroise, C., and Guedj, M. (2011). Accounting for population stratification in practice: a comparison of the main strategies dedicated to genome-wide association studies. PLoS ONE 6:e28845. doi:10.1371/journal.pone.0028845
-
(2011)
PLoS ONE
, vol.6
-
-
Bouaziz, M.1
Ambroise, C.2
Guedj, M.3
-
5
-
-
76249102674
-
Genome-wide patterns of population structure and admixture in West Africans and African Americans
-
Bryc, K., Auton, A., Nelson, M. R., Oksenberg, J. R., Hauser, S. L., Williams, S., et al. (2010). Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc. Natl. Acad. Sci. U.S.A. 107, 786-791.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 786-791
-
-
Bryc, K.1
Auton, A.2
Nelson, M.R.3
Oksenberg, J.R.4
Hauser, S.L.5
Williams, S.6
-
6
-
-
0020334299
-
Some aspects of analysis of covariance
-
Cox, D. R., and McCullagh, P. (1982). Some aspects of analysis of covariance. Biometrics 38, 541-561.
-
(1982)
Biometrics
, vol.38
, pp. 541-561
-
-
Cox, D.R.1
McCullagh, P.2
-
7
-
-
67849130524
-
Predicting quantitative traits with regression models for dense molecular markers and pedigree
-
De Los Campos, G., Naya, H., Gianola, D., Crossa, J., Legarra, A., Manfredi, E., et al. (2009). Predicting quantitative traits with regression models for dense molecular markers and pedigree. Genetics 182, 375-385.
-
(2009)
Genetics
, vol.182
, pp. 375-385
-
-
De Los Campos, G.1
Naya, H.2
Gianola, D.3
Crossa, J.4
Legarra, A.5
Manfredi, E.6
-
8
-
-
0033499153
-
Analyzing large data sets in reasonable times: solutions for composite optima
-
Goloboff, P. A. (1999). Analyzing large data sets in reasonable times: solutions for composite optima. Cladistics 15, 415-428.
-
(1999)
Cladistics
, vol.15
, pp. 415-428
-
-
Goloboff, P.A.1
-
9
-
-
45749124657
-
TNT, a free program for phylogenetic analysis
-
Goloboff, P. A., Farris, J. S., and Nixon, K. C. (2008). TNT, a free program for phylogenetic analysis. Cladistics 24, 774-786.
-
(2008)
Cladistics
, vol.24
, pp. 774-786
-
-
Goloboff, P.A.1
Farris, J.S.2
Nixon, K.C.3
-
10
-
-
80052400583
-
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
-
Hastie, T., Tibshirani, R., and Friedman, J. (2009). The Elements of Statistical Learning: Data Mining, Inference, and Prediction. New York: Springer.
-
(2009)
New York: Springer
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
11
-
-
0000213120
-
Inferring phylogenies from mtDNA variation: mitochondrial-gene trees vs. nuclear-gene trees revisited
-
Hoelzer, G. (1997). Inferring phylogenies from mtDNA variation: mitochondrial-gene trees vs. nuclear-gene trees revisited. Evolution 51, 622-626.
-
(1997)
Evolution
, vol.51
, pp. 622-626
-
-
Hoelzer, G.1
-
12
-
-
34547796899
-
Clinical expression of Leber hereditary optic neuropathy is affected by the mitochondrial DNA-haplogroup background
-
Hudson, G., Carelli, V., Spruijt, L., Gerards, M., Mowbray, C., Achilli, A., et al. (2007). Clinical expression of Leber hereditary optic neuropathy is affected by the mitochondrial DNA-haplogroup background. Am. J. Hum. Genet. 81, 228-233.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 228-233
-
-
Hudson, G.1
Carelli, V.2
Spruijt, L.3
Gerards, M.4
Mowbray, C.5
Achilli, A.6
-
13
-
-
78649566164
-
Evaluating self-declared ancestry of U.S. Americans with autosomal. Y-chromosomal and mitochondrial DNA.
-
Lao, O., Vallone, P. M., Coble, M. D., Diegoli, T. M., Van Oven, M., Van Der Gaag, K. J., et al. (2010). Evaluating self-declared ancestry of U.S. Americans with autosomal, Y-chromosomal and mitochondrial DNA. Hum. Mutat. 31, E1875-E1893.
-
(2010)
Hum. Mutat.
, vol.31
-
-
Lao, O.1
Vallone, P.M.2
Coble, M.D.3
Diegoli, T.M.4
Van Oven, M.5
Van Der Gaag, K.J.6
-
14
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li, H., and Durbin, R. (2011). Inference of human population history from individual whole-genome sequences. Nature 475, 493-496.
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
15
-
-
77951967213
-
Correcting population stratification in genetic association studies using a phylogenetic approach
-
Li, M., Reilly, M. P., Rader, D. J., and Wang, L. S. (2010). Correcting population stratification in genetic association studies using a phylogenetic approach. Bioinformatics 26, 798-806.
-
(2010)
Bioinformatics
, vol.26
, pp. 798-806
-
-
Li, M.1
Reilly, M.P.2
Rader, D.J.3
Wang, L.S.4
-
17
-
-
2442585696
-
The effects of human population structure on large genetic association studies
-
Marchini, J., Cardon, L. R., Phillips, M. S., and Donnelly, P. (2004). The effects of human population structure on large genetic association studies. Nat. Genet. 36, 512-517.
-
(2004)
Nat. Genet.
, vol.36
, pp. 512-517
-
-
Marchini, J.1
Cardon, L.R.2
Phillips, M.S.3
Donnelly, P.4
-
18
-
-
0000058501
-
Inferring phylogenies from mtDNA variation: mitochondrial-gene trees vs. nuclear-gene trees
-
Moore, W. (1995). Inferring phylogenies from mtDNA variation: mitochondrial-gene trees vs. nuclear-gene trees. Evolution 49, 718-726.
-
(1995)
Evolution
, vol.49
, pp. 718-726
-
-
Moore, W.1
-
19
-
-
0033504552
-
The parsimony ratchet, a new method for rapid parsimony analysis
-
Nixon, K. C. (1999). The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15, 407-414.
-
(1999)
Cladistics
, vol.15
, pp. 407-414
-
-
Nixon, K.C.1
-
20
-
-
84862571933
-
A genome-wide association study of host genetic determinants of the antibody response to anthrax vaccine adsorbed
-
Pajewski, N. M., Shrestha, S., Quinn, C. P., Parker, S. D., Wiener, H., Aissani, B., et al. (2012). A genome-wide association study of host genetic determinants of the antibody response to anthrax vaccine adsorbed. Vaccine 30, 4778-4784.
-
(2012)
Vaccine
, vol.30
, pp. 4778-4784
-
-
Pajewski, N.M.1
Shrestha, S.2
Quinn, C.P.3
Parker, S.D.4
Wiener, H.5
Aissani, B.6
-
21
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A., and Reich, D. (2006). Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38, 904-909.
-
(2006)
Nat. Genet.
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
22
-
-
77953811255
-
New approaches to population stratification in genome-wide association studies
-
Price, A. L., Zaitlen, N. A., Reich, D., and Patterson, N. (2010). New approaches to population stratification in genome-wide association studies. Nat. Rev. Genet. 11, 459-463.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 459-463
-
-
Price, A.L.1
Zaitlen, N.A.2
Reich, D.3
Patterson, N.4
-
23
-
-
80053391012
-
Whole-genome sequencing data offer insights into human demography
-
Pritchard, J. K. (2011). Whole-genome sequencing data offer insights into human demography. Nat. Genet. 43, 923-925.
-
(2011)
Nat. Genet.
, vol.43
, pp. 923-925
-
-
Pritchard, J.K.1
-
24
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard, J. K., Stephens, M., and Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
26
-
-
0037058998
-
Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: what mtDNA reveals and conceals about modes of speciation in Hawaiian crickets
-
Shaw, K. (2002). Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: what mtDNA reveals and conceals about modes of speciation in Hawaiian crickets. Proc. Natl. Acad. Sci. U.S.A. 99, 16122-16127.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 16122-16127
-
-
Shaw, K.1
-
27
-
-
79551638387
-
Ancestry of the Iban is predominantly Southeast Asian: genetic evidence from autosomal, mitochondrial, and Y chromosomes
-
doi:10.1371/journal.pone.0016338
-
Simonson, T. S., Xing, J., Barrett, R., Jerah, E., Loa, P., Zhang, Y., et al. (2011). Ancestry of the Iban is predominantly Southeast Asian: genetic evidence from autosomal, mitochondrial, and Y chromosomes. PLoS ONE 6:e16338. doi:10.1371/journal.pone.0016338
-
(2011)
PLoS ONE
, vol.6
-
-
Simonson, T.S.1
Xing, J.2
Barrett, R.3
Jerah, E.4
Loa, P.5
Zhang, Y.6
-
28
-
-
67449151608
-
Conflicting mitochondrial and nuclear phylogenies for the widely disjunct Emys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization
-
Spinks, P. Q., and Shaffer, H. B. (2009). Conflicting mitochondrial and nuclear phylogenies for the widely disjunct Emys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization. Syst. Biol. 58, 1-20.
-
(2009)
Syst. Biol.
, vol.58
, pp. 1-20
-
-
Spinks, P.Q.1
Shaffer, H.B.2
-
29
-
-
0035142366
-
Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction
-
Springer, M. S., Debry, R. W., Douady, C., Amrine, H. M., Madsen, O., De Jong, W. W., et al. (2001). Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Mol. Biol. Evol. 18, 132-143.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 132-143
-
-
Springer, M.S.1
Debry, R.W.2
Douady, C.3
Amrine, H.M.4
Madsen, O.5
De Jong, W.W.6
-
30
-
-
79251551936
-
Dissecting the within-Africa ancestry of populations of African descent in the Americas
-
doi:10.1371/journal.pone.0014495
-
Stefflova, K., Dulik, M. C., Barnholtz-Sloan, J. S., Pai, A. A., Walker, A. H., and Rebbeck, T. R. (2011). Dissecting the within-Africa ancestry of populations of African descent in the Americas. PLoS ONE 6:e14495. doi:10.1371/journal.pone.0014495
-
(2011)
PLoS ONE
, vol.6
-
-
Stefflova, K.1
Dulik, M.C.2
Barnholtz-Sloan, J.S.3
Pai, A.A.4
Walker, A.H.5
Rebbeck, T.R.6
-
32
-
-
57549090341
-
Accounting for ancestry: population substructure and genome-wide association studies
-
Tian, C., Gregersen, P. K., and Seldin, M. F. (2008). Accounting for ancestry: population substructure and genome-wide association studies. Hum. Mol. Genet. 17, R143-R150.
-
(2008)
Hum. Mol. Genet.
, vol.17
-
-
Tian, C.1
Gregersen, P.K.2
Seldin, M.F.3
-
33
-
-
41649099637
-
Review and evaluation of methods correcting for population stratification with a focus on underlying statistical principles
-
Tiwari, H. K., Barnholtz-Sloan, J., Wineinger, N., Padilla, M. A., Vaughan, L. K., and Allison, D. B. (2008). Review and evaluation of methods correcting for population stratification with a focus on underlying statistical principles. Hum. Hered. 66, 67-86.
-
(2008)
Hum. Hered.
, vol.66
, pp. 67-86
-
-
Tiwari, H.K.1
Barnholtz-Sloan, J.2
Wineinger, N.3
Padilla, M.A.4
Vaughan, L.K.5
Allison, D.B.6
-
34
-
-
49749122987
-
Population substructure and control selection in genome-wide association studies
-
doi:10.1371/journal.pone.0002551
-
Yu, K., Wang, Z., Li, Q., Wacholder, S., Hunter, D. J., Hoover, R. N., et al. (2008). Population substructure and control selection in genome-wide association studies. PLoS ONE 3:e2551. doi:10.1371/journal.pone.0002551
-
(2008)
PLoS ONE
, vol.3
-
-
Yu, K.1
Wang, Z.2
Li, Q.3
Wacholder, S.4
Hunter, D.J.5
Hoover, R.N.6
-
35
-
-
54449089328
-
Comparison of population-based association study methods correcting for population stratification
-
doi:10.1371/journal.pone.0003392
-
Zhang, F., Wang, Y., and Deng, H. W. (2008). Comparison of population-based association study methods correcting for population stratification. PLoS ONE 3:e3392. doi:10.1371/journal.pone.0003392
-
(2008)
PLoS ONE
, vol.3
-
-
Zhang, F.1
Wang, Y.2
Deng, H.W.3
|