-
1
-
-
33745795732
-
The Comparative Toxicogenomics Database: a cross-species resource for building chemical-gene interaction networks
-
Mattingly CJ, Rosenstein MC, Davis AP, Colby GT, Forrest JN, et al. (2006) The Comparative Toxicogenomics Database: a cross-species resource for building chemical-gene interaction networks. Toxicol Sci 92: 587-595.
-
(2006)
Toxicol Sci
, vol.92
, pp. 587-595
-
-
Mattingly, C.J.1
Rosenstein, M.C.2
Davis, A.P.3
Colby, G.T.4
Forrest, J.N.5
-
2
-
-
84876467333
-
-
Nucleic Acids Res doi:10.1093/nar/gks994
-
Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, et al. (2013) The Comparative Toxicogenomics Database: update 2013. Nucleic Acids Res doi:10.1093/nar/gks994.
-
(2013)
The Comparative Toxicogenomics Database: Update 2013
-
-
Davis, A.P.1
Murphy, C.G.2
Johnson, R.3
Lay, J.M.4
Lennon-Hopkins, K.5
-
3
-
-
78651317084
-
The Comparative Toxicogenomics Database: update 2011
-
Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, et al. (2011) The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res 39: D1067-1072.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Davis, A.P.1
King, B.L.2
Mockus, S.3
Murphy, C.G.4
Saraceni-Richards, C.5
-
4
-
-
58149200928
-
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks
-
Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, et al. (2009) Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. Nucleic Acids Res 37: D786-792.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Davis, A.P.1
Murphy, C.G.2
Saraceni-Richards, C.A.3
Rosenstein, M.C.4
Wiegers, T.C.5
-
5
-
-
70449714354
-
The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study
-
Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Mattingly CJ, (2008) The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study. BMC Med Genomics 1: 48.
-
(2008)
BMC Med Genomics
, vol.1
, pp. 48
-
-
Davis, A.P.1
Murphy, C.G.2
Rosenstein, M.C.3
Wiegers, T.C.4
Mattingly, C.J.5
-
6
-
-
84855743190
-
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
-
Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ, (2011) The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database. Database Sep 20 2011: bar034.
-
(2011)
Database Sep 20
, vol.2011
-
-
Davis, A.P.1
Wiegers, T.C.2
Rosenstein, M.C.3
Murphy, C.G.4
Mattingly, C.J.5
-
7
-
-
33750443900
-
Biocurators: contributors to the world of science
-
Bourne PE, McEntyre J, (2006) Biocurators: contributors to the world of science. PLoS Comput Biol 2: e142.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Bourne, P.E.1
McEntyre, J.2
-
8
-
-
84862266214
-
Biocurators and biocuration: surveying the 21st century challenges
-
Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, et al. (2012) Biocurators and biocuration: surveying the 21st century challenges. Database Mar 20 2012: bar059.
-
(2012)
Database Mar 20
, vol.2012
-
-
Burge, S.1
Attwood, T.K.2
Bateman, A.3
Berardini, T.Z.4
Cherry, M.5
-
9
-
-
80051972800
-
The importance of biological databases in biological discovery
-
Baxevanis AD, (2011) The importance of biological databases in biological discovery. Curr Protoc Bioinformatics 34: 1.1.1-1.1.6.
-
(2011)
Curr Protoc Bioinformatics
, vol.34
, pp. 1-6
-
-
Baxevanis, A.D.1
-
11
-
-
34547844156
-
Manual curation is not sufficient for annotation of genomic databases
-
Baumgartner WA, Cohen KB, Fox LM, Axquaah-Mensah G, Hunter L, (2007) Manual curation is not sufficient for annotation of genomic databases. Bioinformatics 23: 41-48.
-
(2007)
Bioinformatics
, vol.23
, pp. 41-48
-
-
Baumgartner, W.A.1
Cohen, K.B.2
Fox, L.M.3
Axquaah-Mensah, G.4
Hunter, L.5
-
12
-
-
51349115095
-
Big data: the future of biocuration
-
Howe D, Costanzo M, Fey P, Gojobori T, Hannick L, et al. (2008) Big data: the future of biocuration. Nature 455: 47-50.
-
(2008)
Nature
, vol.455
, pp. 47-50
-
-
Howe, D.1
Costanzo, M.2
Fey, P.3
Gojobori, T.4
Hannick, L.5
-
14
-
-
84888849407
-
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database
-
Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, et al. (2012) Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database. Database Dec 6: bas051.
-
(2012)
Database Dec
, vol.6
-
-
Davis, A.P.1
Johnson, R.J.2
Lennon-Hopkins, K.3
Sciaky, D.4
Rosenstein, M.C.5
-
15
-
-
70449720821
-
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
-
Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ, (2009) Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD). BMC Bioinformatics 10: 326.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 326
-
-
Wiegers, T.C.1
Davis, A.P.2
Cohen, K.B.3
Hirschman, L.4
Mattingly, C.J.5
-
16
-
-
84862261069
-
Text mining for the biocuration workflow
-
Hirschman L, Burns GA, Krallinger M, Arighi C, Cohen KB, et al. (2012) Text mining for the biocuration workflow. Database Apr 18 2012: bas020.
-
(2012)
Database Apr 18
, vol.2012
-
-
Hirschman, L.1
Burns, G.A.2
Krallinger, M.3
Arighi, C.4
Cohen, K.B.5
-
17
-
-
84876219466
-
Collaborative biocuration-text mining development task for document prioritization for curation
-
Wiegers TC, Davis AP, Mattingly CJ, (2012) Collaborative biocuration-text mining development task for document prioritization for curation. Database Nov 22 2012: bas037.
-
(2012)
Database Nov 22
, vol.2012
-
-
Wiegers, T.C.1
Davis, A.P.2
Mattingly, C.J.3
-
18
-
-
84908088795
-
Integrating text mining into the MGI biocuration workflow
-
Dowell KG, McAndrews-Hill MS, Hill DP, Drabkin HJ, Blake JA, (2009) Integrating text mining into the MGI biocuration workflow. Database 2009: bap019.
-
(2009)
Database
, vol.2009
-
-
Dowell, K.G.1
McAndrews-Hill, M.S.2
Hill, D.P.3
Drabkin, H.J.4
Blake, J.A.5
-
19
-
-
84861207340
-
WormBase 2012: more genomes, more data, new website
-
Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, et al. (2012) WormBase 2012: more genomes, more data, new website. Nucleic Acids Res 40: D735-D741.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Yook, K.1
Harris, T.W.2
Bieri, T.3
Cabunoc, A.4
Chan, J.5
-
20
-
-
84856106232
-
Automatic categorization of diverse experimental information in the bioscience literature
-
Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, et al. (2012) Automatic categorization of diverse experimental information in the bioscience literature. BMC Bioinformatics 13: 16.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 16
-
-
Fang, R.1
Schindelman, G.2
Van Auken, K.3
Fernandes, J.4
Chen, W.5
-
21
-
-
14044254746
-
Textpresso: an ontology-based information retrieval and extraction system for biological literature
-
Muller HM, Kenny EE, Sternberg PW, (2004) Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol 2: e309.
-
(2004)
PLoS Biol
, vol.2
-
-
Muller, H.M.1
Kenny, E.E.2
Sternberg, P.W.3
-
22
-
-
70350455266
-
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation
-
Van Auken K, Jaffery J, Chan J, Muller HM, Sternberg PW, (2009) Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics 10: 228.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 228
-
-
Van Auken, K.1
Jaffery, J.2
Chan, J.3
Muller, H.M.4
Sternberg, P.W.5
-
23
-
-
77951625606
-
A MOD(ern) perspective on literature curation
-
Hirschman J, Berardini TZ, Drabkin HJ, Howe D, (2010) A MOD(ern) perspective on literature curation. Mol Genet Genomics 283: 415-425.
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 415-425
-
-
Hirschman, J.1
Berardini, T.Z.2
Drabkin, H.J.3
Howe, D.4
-
24
-
-
84857745267
-
Database resources of the National Center for Biotechnology Information
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2012) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 40: D13-25.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
-
25
-
-
79954642381
-
Advances in metal-induced oxidative stress and human disease
-
Jomova K, Valko M, (2011) Advances in metal-induced oxidative stress and human disease. Toxicology 283: 65-87.
-
(2011)
Toxicology
, vol.283
, pp. 65-87
-
-
Jomova, K.1
Valko, M.2
-
27
-
-
25144520247
-
ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text
-
Settles B, (2005) ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics 21: 3191-3192.
-
(2005)
Bioinformatics
, vol.21
, pp. 3191-3192
-
-
Settles, B.1
-
28
-
-
0035752429
-
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program
-
Aronson AR, (2001) Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proc AMIA Symp 2001: 17-21.
-
(2001)
Proc AMIA Symp
, vol.2001
, pp. 17-21
-
-
Aronson, A.R.1
-
29
-
-
56649102386
-
Cascaded classifiers for confidence-based chemical named entity recognition
-
Corbett P, Copestake A, (2008) Cascaded classifiers for confidence-based chemical named entity recognition. BMC Bioinformatics 9Supplement 11: S4.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Corbett, P.1
Copestake, A.2
-
30
-
-
55349128656
-
High-throughput idnetification of chemistry in life sciences text
-
Berthold MR, Glen RC, Fischer I, editors, Heidelberg: Springer-Verlag
-
Corbett P, Murray-Rust P (2006) High-throughput idnetification of chemistry in life sciences text. In: Berthold MR, Glen RC, Fischer I, editors. Computational Life Sciencess II. Heidelberg: Springer-Verlag.
-
(2006)
Computational Life Sciencess II
-
-
Corbett, P.1
Murray-Rust, P.2
|