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Volumn 8, Issue 4, 2013, Pages

Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database

Author keywords

[No Author keywords available]

Indexed keywords

CADMIUM; COBALT; COPPER; HEAVY METAL; LEAD; MANGANESE; MERCURY; NICKEL;

EID: 84876279267     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0058201     Document Type: Article
Times cited : (62)

References (30)
  • 1
    • 33745795732 scopus 로고    scopus 로고
    • The Comparative Toxicogenomics Database: a cross-species resource for building chemical-gene interaction networks
    • Mattingly CJ, Rosenstein MC, Davis AP, Colby GT, Forrest JN, et al. (2006) The Comparative Toxicogenomics Database: a cross-species resource for building chemical-gene interaction networks. Toxicol Sci 92: 587-595.
    • (2006) Toxicol Sci , vol.92 , pp. 587-595
    • Mattingly, C.J.1    Rosenstein, M.C.2    Davis, A.P.3    Colby, G.T.4    Forrest, J.N.5
  • 5
    • 70449714354 scopus 로고    scopus 로고
    • The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study
    • Davis AP, Murphy CG, Rosenstein MC, Wiegers TC, Mattingly CJ, (2008) The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study. BMC Med Genomics 1: 48.
    • (2008) BMC Med Genomics , vol.1 , pp. 48
    • Davis, A.P.1    Murphy, C.G.2    Rosenstein, M.C.3    Wiegers, T.C.4    Mattingly, C.J.5
  • 6
    • 84855743190 scopus 로고    scopus 로고
    • The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
    • Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ, (2011) The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database. Database Sep 20 2011: bar034.
    • (2011) Database Sep 20 , vol.2011
    • Davis, A.P.1    Wiegers, T.C.2    Rosenstein, M.C.3    Murphy, C.G.4    Mattingly, C.J.5
  • 7
    • 33750443900 scopus 로고    scopus 로고
    • Biocurators: contributors to the world of science
    • Bourne PE, McEntyre J, (2006) Biocurators: contributors to the world of science. PLoS Comput Biol 2: e142.
    • (2006) PLoS Comput Biol , vol.2
    • Bourne, P.E.1    McEntyre, J.2
  • 9
    • 80051972800 scopus 로고    scopus 로고
    • The importance of biological databases in biological discovery
    • Baxevanis AD, (2011) The importance of biological databases in biological discovery. Curr Protoc Bioinformatics 34: 1.1.1-1.1.6.
    • (2011) Curr Protoc Bioinformatics , vol.34 , pp. 1-6
    • Baxevanis, A.D.1
  • 10
  • 13
    • 84862253166 scopus 로고    scopus 로고
    • MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database
    • Davis AP, Wiegers TC, Rosenstein MC, Mattingly CJ, (2012) MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database. Database Mar 20 2012: bar065.
    • (2012) Database Mar 20 , vol.2012
    • Davis, A.P.1    Wiegers, T.C.2    Rosenstein, M.C.3    Mattingly, C.J.4
  • 14
    • 84888849407 scopus 로고    scopus 로고
    • Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database
    • Davis AP, Johnson RJ, Lennon-Hopkins K, Sciaky D, Rosenstein MC, et al. (2012) Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database. Database Dec 6: bas051.
    • (2012) Database Dec , vol.6
    • Davis, A.P.1    Johnson, R.J.2    Lennon-Hopkins, K.3    Sciaky, D.4    Rosenstein, M.C.5
  • 15
    • 70449720821 scopus 로고    scopus 로고
    • Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
    • Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ, (2009) Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD). BMC Bioinformatics 10: 326.
    • (2009) BMC Bioinformatics , vol.10 , pp. 326
    • Wiegers, T.C.1    Davis, A.P.2    Cohen, K.B.3    Hirschman, L.4    Mattingly, C.J.5
  • 17
    • 84876219466 scopus 로고    scopus 로고
    • Collaborative biocuration-text mining development task for document prioritization for curation
    • Wiegers TC, Davis AP, Mattingly CJ, (2012) Collaborative biocuration-text mining development task for document prioritization for curation. Database Nov 22 2012: bas037.
    • (2012) Database Nov 22 , vol.2012
    • Wiegers, T.C.1    Davis, A.P.2    Mattingly, C.J.3
  • 20
    • 84856106232 scopus 로고    scopus 로고
    • Automatic categorization of diverse experimental information in the bioscience literature
    • Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, et al. (2012) Automatic categorization of diverse experimental information in the bioscience literature. BMC Bioinformatics 13: 16.
    • (2012) BMC Bioinformatics , vol.13 , pp. 16
    • Fang, R.1    Schindelman, G.2    Van Auken, K.3    Fernandes, J.4    Chen, W.5
  • 21
    • 14044254746 scopus 로고    scopus 로고
    • Textpresso: an ontology-based information retrieval and extraction system for biological literature
    • Muller HM, Kenny EE, Sternberg PW, (2004) Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol 2: e309.
    • (2004) PLoS Biol , vol.2
    • Muller, H.M.1    Kenny, E.E.2    Sternberg, P.W.3
  • 22
    • 70350455266 scopus 로고    scopus 로고
    • Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation
    • Van Auken K, Jaffery J, Chan J, Muller HM, Sternberg PW, (2009) Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics 10: 228.
    • (2009) BMC Bioinformatics , vol.10 , pp. 228
    • Van Auken, K.1    Jaffery, J.2    Chan, J.3    Muller, H.M.4    Sternberg, P.W.5
  • 25
    • 79954642381 scopus 로고    scopus 로고
    • Advances in metal-induced oxidative stress and human disease
    • Jomova K, Valko M, (2011) Advances in metal-induced oxidative stress and human disease. Toxicology 283: 65-87.
    • (2011) Toxicology , vol.283 , pp. 65-87
    • Jomova, K.1    Valko, M.2
  • 27
    • 25144520247 scopus 로고    scopus 로고
    • ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text
    • Settles B, (2005) ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics 21: 3191-3192.
    • (2005) Bioinformatics , vol.21 , pp. 3191-3192
    • Settles, B.1
  • 28
    • 0035752429 scopus 로고    scopus 로고
    • Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program
    • Aronson AR, (2001) Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proc AMIA Symp 2001: 17-21.
    • (2001) Proc AMIA Symp , vol.2001 , pp. 17-21
    • Aronson, A.R.1
  • 29
    • 56649102386 scopus 로고    scopus 로고
    • Cascaded classifiers for confidence-based chemical named entity recognition
    • Corbett P, Copestake A, (2008) Cascaded classifiers for confidence-based chemical named entity recognition. BMC Bioinformatics 9Supplement 11: S4.
    • (2008) BMC Bioinformatics , vol.9
    • Corbett, P.1    Copestake, A.2
  • 30
    • 55349128656 scopus 로고    scopus 로고
    • High-throughput idnetification of chemistry in life sciences text
    • Berthold MR, Glen RC, Fischer I, editors, Heidelberg: Springer-Verlag
    • Corbett P, Murray-Rust P (2006) High-throughput idnetification of chemistry in life sciences text. In: Berthold MR, Glen RC, Fischer I, editors. Computational Life Sciencess II. Heidelberg: Springer-Verlag.
    • (2006) Computational Life Sciencess II
    • Corbett, P.1    Murray-Rust, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.