-
1
-
-
0037050020
-
Protein complexes take the bait
-
Kumar A, Snyder M. Protein complexes take the bait. Nature, 2002, 415(6868): 123-124.
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 123-124
-
-
Kumar, A.1
Snyder, M.2
-
3
-
-
46149108150
-
Using indirect protein-protein interactions for protein complex prediction
-
Chua H N, Ning K, Sung W K, Leong H W, Wong L. Using indirect protein-protein interactions for protein complex prediction. J. Bioinform. Comput. Biol., 2008, 6(3): 435-466.
-
(2008)
J. Bioinform. Comput. Biol.
, vol.6
, Issue.3
, pp. 435-466
-
-
Chua, H.N.1
Ning, K.2
Sung, W.K.3
Leong, H.W.4
Wong, L.5
-
5
-
-
33947109414
-
A seed-refine algorithm for detecting protein complexes from protein interaction data
-
Pei P Zhang A. A seed-refine algorithm for detecting protein complexes from protein interaction data. IEEE Transactions on Nanobioscience, 2007, 6(1): 43-50.
-
(2007)
IEEE Transactions on Nanobioscience
, vol.6
, Issue.1
, pp. 43-50
-
-
Pei, P.1
Zhang, A.2
-
7
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader G, Hogue C. An automated method for finding molecular complexes in large protein interaction networks. BMCBioinformatics, 2003, 4(2): 1-27.
-
(2003)
BMCBioinformatics
, vol.4
, Issue.2
, pp. 1-27
-
-
Bader, G.1
Hogue, C.2
-
8
-
-
33749541272
-
Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods
-
Springer-Verlag Berlin, Heidelberg
-
Zhang S, Ning X, Liu H, Zhang X. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. In: International Conference on Intelligent Computing. Springer-Verlag Berlin, Heidelberg, 2006.
-
(2006)
International Conference on Intelligent Computing
-
-
Zhang, S.1
Ning, X.2
Liu, H.3
Zhang, X.4
-
9
-
-
33645830948
-
CFinder: Locating cliques and overlapping modules in biological networks
-
Adamcsek B. CFinder: Locating cliques and overlapping modules in biological networks. Bioinformatics, 2006, 22(8): 1021-1023.
-
(2006)
Bioinformatics
, vol.22
, Issue.8
, pp. 1021-1023
-
-
Adamcsek, B.1
-
10
-
-
33748579201
-
Interaction graph mining for protein complexes using local clique merging
-
Li X, Tan S, Foo C, Ng S. Interaction graph mining for protein complexes using local clique merging. Genome Informatics, 2005, 16(2): 260-269.
-
(2005)
Genome Informatics
, vol.16
, Issue.2
, pp. 260-269
-
-
Li, X.1
Tan, S.2
Foo, C.3
Ng, S.4
-
11
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright A J, Dongen S V, Ouzounis C A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 2002,30(7): 1575-1584.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.7
, pp. 1575-1584
-
-
Enright, A.J.1
Dongen, S.V.2
Ouzounis, C.A.3
-
12
-
-
0346156102
-
Detection of functional modules from protein interaction networks
-
Pereira-Leal J B, Enright A J, Ouzounis C A. Detection of functional modules from protein interaction networks. Nat Biotechnol. Snel. Et., 2004, 54(1): 49-57.
-
(2004)
Nat Biotechnol. Snel. Et.
, vol.54
, Issue.1
, pp. 49-57
-
-
Pereira-Leal, J.B.1
Enright, A.J.2
Ouzounis, C.A.3
-
13
-
-
33744805096
-
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
-
Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S. Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics, 2006, 7(207): 1-13.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.207
, pp. 1-13
-
-
Altaf-Ul-Amin, M.1
Shinbo, Y.2
Mihara, K.3
Kurokawa, K.4
Kanaya, S.5
-
14
-
-
67650735594
-
Complex discovery from weighted PPI networks
-
Liu G M, Limsoon W, Chua H N. Complex discovery from weighted PPI networks. BMC Bioinformatics, 2009, 25(15): 1891-1897.
-
(2009)
BMC Bioinformatics
, vol.25
, Issue.15
, pp. 1891-1897
-
-
Liu, G.M.1
Limsoon, W.2
Chua, H.N.3
-
15
-
-
67649518162
-
A core-attachment based method to detect protein complexes in PPI networks
-
Wu M, Li X L, Chee-Keong K, See-Kiong N. A core-attachment based method to detect protein complexes in PPI networks. BMCBioinformatics, 2009, 10(169): 1-16.
-
(2009)
BMCBioinformatics
, vol.10
, Issue.169
, pp. 1-16
-
-
Wu, M.1
Li, X.L.2
Chee-Keong, K.3
See-Kiong, N.4
-
16
-
-
78149344632
-
Identifying protein complexes from interaction networks based on clique percolation and distance restriction
-
Wang J X, Liu B B, Li M, Pan Y. Identifying protein complexes from interaction networks based on clique percolation and distance restriction. BMC Genomics, 2010, 11(Suppl 2): S10
-
BMC Genomics
, vol.2010
, Issue.11 SUPPL. 2
-
-
Wang, J.X.1
Liu, B.B.2
Li, M.3
Pan, Y.4
-
17
-
-
79952841798
-
A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks
-
Wang JX,LiM, Chen J E, Pan Y. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks. IEEE Transactions on Computational Biology and Bioinformatics, 2011, 8(3): 607-620.
-
(2011)
IEEE Transactions on Computational Biology and Bioinformatics
, vol.8
, Issue.3
, pp. 607-620
-
-
Jxlim, W.1
Chen, J.E.2
Pan, Y.3
-
18
-
-
84862954998
-
An improved graph entropy-based method for identifying protein complexes. In: Proceedings of 2011
-
Atlanta, GA, USA
-
Chen B L, Yan Y Shi J H, Zhang S G, Wu F X. An improved graph entropy-based method for identifying protein complexes. In: Proceedings of 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Atlanta, GA, USA, 2011.
-
(2011)
IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
-
-
Chen, B.L.1
Yan, Y.2
Shi, J.H.3
Zhang, S.G.4
Wu, F.X.5
-
19
-
-
84859170942
-
Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model
-
Zhang X F, Dai DQ,LiX X. Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model. Computational Biology andBioinformatics, 2012, 9(3): 857-870.
-
(2012)
Computational Biology AndBioinformatics
, vol.9
, Issue.3
, pp. 857-870
-
-
Zhang, X.F.1
Dai, D.Q.2
Li, X.X.3
-
20
-
-
84876247324
-
Identifying protein complexes from interactome based on essential proteins and local fitness method
-
Wang J X, Chen G, Liu B B, Li M, Pan Y. Identifying protein complexes from interactome based on essential proteins and local fitness method. IEEE Trans. Nanobioscience, 2012, 12(99): 1.
-
(2012)
IEEE Trans. Nanobioscience
, vol.12
, Issue.99
, pp. 1
-
-
Wang, J.X.1
Chen, G.2
Liu, B.B.3
Li, M.4
Pan, Y.5
-
21
-
-
0033971642
-
DIP: The database of interaction proteins
-
Xenarios I, Rice D W, Salwinski L, Baron M K, Marcotte E M, Eisenberg D. DIP: The database of interaction proteins. Nucleic Acids Res., 2000, 28(1): 289-291
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 289-291
-
-
Xenarios, I.1
Rice, D.W.2
Salwinski, L.3
Baron, M.K.4
Marcotte, E.M.5
Eisenberg, D.6
-
22
-
-
84876232603
-
-
ftp://ftpmips.gsf.de/ yeast/catalogues/complexcat/
-
Protein Complexes Database. ftp: //ftpmips.gsf.de/ yeast/catalogues/ complexcat/, 2012.
-
(2012)
Protein Complexes Database
-
-
-
25
-
-
54349096842
-
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
-
Li M, Chen J E, Wang J X, Bin H, Chen G. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics, 2008, 9(398): 1-16.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.398
, pp. 1-16
-
-
Li, M.1
Chen, J.E.2
Wang, J.X.3
Bin, H.4
Chen, G.5
-
26
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
Spirin V, Mirny L. Protein complexes and functional modules in molecular networks. Pro. Natl. Acad. Sci., 2003, 100(21): 12123-12128.
-
(2003)
Pro. Natl. Acad. Sci.
, vol.100
, Issue.21
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.2
-
27
-
-
10244264813
-
Protein complex prediction via cost-based clustering
-
King A, Przulj N, Jurisica I. Protein complex prediction via cost-based clustering. Bioinformatics, 2004, 20(17): 3013-3020.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3013-3020
-
-
King, A.1
Przulj, N.2
Jurisica, I.3
-
28
-
-
84858991848
-
Discovering functional interdependence relationship in PPI networks for protein complex identification
-
Lam W W, Chan K C. Discovering functional interdependence relationship in PPI networks for protein complex identification. IEEE Trans. Biomed. Eng., 2012, 59(4): 899-908.
-
(2012)
IEEE Trans. Biomed. Eng.
, vol.59
, Issue.4
, pp. 899-908
-
-
Lam, W.W.1
Chan, K.C.2
|