Characterization and potentials of indigenous oil-degrading bacteria inhabiting the rhizosphere of wild oat (Avena Fatua L.) in south west of iran

Iranian Journal of Biotechnology

Volumn 11, Issue 1, 2013, Pages 32-40

  Seyedi, Seyed Mahdi ^b   Rajaei, Saeideh ^a   Raiesi, Fayez ^a   Shiran, Behrouz ^a   Raheb, Jamshid ^b  

^a SHAHREKORD UNIVERSITY   (Iran)

^b NATIONAL INSTITUTE OF GENETIC ENGINEERING AND BIOTECHNOLOGY   (Iran)

Author keywords

16s rRNA; alkB; Avena fatua L; Indigenous oil degrading bacteria; Rhizosphere; xylE

Indexed keywords

ALKANE; AROMATIC COMPOUND; HYDROCARBON; PETROCHEMICAL AGENT; PETROLEUM; RNA 16S;

ACHROMOBACTER; ACINETOBACTER; ALKB GENE; ALKM GENE; ARTICLE; BACILLUS; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; BIODEGRADABILITY; CURTOBACTERIUM; ENTEROBACTER; GENE IDENTIFICATION; GENE SEQUENCE; IN VITRO STUDY; IRAN; LIQUID CULTURE; MICROBACTERIUM; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OAT; OCHROBACTRUM; PAENIBACILLUS; PHYTOREMEDIATION; PLANT GROWTH; PSEUDOMONAS; RHIZOSPHERE; SOIL POLLUTION; SPHINGOBACTERIUM; STENOTROPHOMONAS; XYLE GENE;

ACHROMOBACTER; ACINETOBACTER; AVENA FATUA; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); CURTOBACTERIUM; ENTEROBACTER; MICROBACTERIUM; OCHROBACTRUM; PAENIBACILLUS; PSEUDOMONAS; SPHINGOBACTERIUM; STENOTROPHOMONAS;

EID: 84876216300     PISSN: 17283043     EISSN: None     Source Type: Journal    
DOI: 10.5812/ijb.9334     Document Type: Article

References (44)

1. EPA U. Method 3540C non-volatile and semi-volatile organic compounds: EPA; 1986.
2. Stroud JL, Paton GI, Semple KT. Microbe-aliphatic hydrocarbon interactions in soil: implications for biodegradation and bioremediation. J Appl Microbiol. 2007;102(5):1239-53.
3. Mishra S, Jyot J, Kuhad RC, Lal B. Evaluation of inoculum addition to stimulate in situ bioremediation of oily-sludge-contaminated soil. Appl Environ Microbiol. 2001;67(4):1675-81.
4. Churchill SA, Harper JP, Churchill PF. Isolation and characterization of a Mycobacterium species capable of degrading three- and four-ring aromatic and aliphatic hydrocarbons. Appl Environ Microbiol. 1999;65(2):549-52.
5. Margesin R, Schinner F. Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in an alpine glacier skiing area. Appl Environ Microbiol. 2001;67(7):3127-33.
6. Kuiper I, Lagendijk EL, Bloemberg GV, Lugtenberg BJ. Rhizoremediation: a beneficial plant-microbe interaction. Mol Plant Microbe Interact. 2004;17(1):6-15.
7. Atlas RM. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiol Rev. 1981;45(1):180-209.
8. Van Hamme JD, Singh A, Ward OP. Recent advances in petroleum microbiology. Microbiol Mol Biol Rev. 2003;67(4):503-49.
9. Jain PK, Gupta VK, Pathak H, Lowry M, Jaroli DP. Characterization of 2T engine oil degrading indigenous bacteria, isolated from high altitude (Mussoorie), India. World J Microbiol Biotechnol. 2010;26(8):1419-26.
10. Whyte LG, Schultz A, Beilen JB, Luz AP, Pellizari V, Labbe D, et al. Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils. FEMS Microbiol Ecol. 2002;41(2):141-50.
11. Throne-Holst M, Markussen S, Winnberg A, Ellingsen TE, Kotlar HK, Zotchev SB. Utilization of n-alkanes by a newly isolated strain of Acinetobacter venetianus: the role of two AlkB-type alkane hydroxylases. Appl Microbiol Biotechnol. 2006;72(2):353-60.
12. Van Beilen JB, Panke S, Lucchini S, Franchini AG, Rothlisberger M, Witholt B. Analysis of the Pseudomonas putida alkanedegradation gene cluster and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology. 2001;147:1621-30.
13. Jussila MM, Zhao J, Suominen L, Lindstrom K. TOL plasmid transfer during bacterial conjugation in vitro and rhizoremediation of oil compounds in vivo. Environ Pollut. 2007;146(2):510-24.
14. Piskonen R, Nyyssonen M, Itavaara M. Evaluating the biodegradation of aromatic hydrocarbons by monitoring of several functional genes. Biodegradation. 2008;19(6):883-95.
15. Ringelberg DB, Talley JW, Perkins EJ, Tucker SG, Luthy RG, Bouwer EJ, et al. Succession of phenotypic, genotypic, and metabolic community characteristics during in vitro bioslurry treatment of polycyclic aromatic hydrocarbon-contaminated sediments. Appl Environ Microbiol. 2001;67(4):1542-50.
16. Daane LL, Harjono I, Zylstra GJ, Haggblom MM. Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Appl Environ Microbiol. 2001;67(6):2683-91.
17. Siciliano SD, Germida JJ. Mechanisms of phytoremediation: biochemical and ecological interactions between plants and bacteria. Envir Rev. 1998;6(1):65-79.
18. Liste HH, Prutz I. Plant performance, dioxygenase-expressing rhizosphere bacteria, and biodegradation of weathered hydrocarbons in contaminated soil. Chemosphere. 2006;62(9):1411-20.
19. Yateem A, Al-Sharrah T, Bin-Haji A. Investigation of microbes in the rhizosphere of selected trees for the rhizoremediation of hydrocarbon-contaminated soils. Int J Phytoremediation. 2008;10:311-24.
20. Arvanitis N, Katsifas EA, Chalkou KI, Meintanis C, Karagouni AD. A refinery sludge deposition site: presence of nahH and alkJ genes and crude oil biodegradation ability of bacterial isolates. Biotechnol Lett. 2008;30(12):2105-10.
21. Wilson K. Preparation of genomic DNA from bacteria. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Struhl K, editors. Current Protocols in Molecular Biology. New York: John Wiley & Sons; 1994. p. 241-5.
22. Margesin R, Labbe D, Schinner F, Greer CW, Whyte LG. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils. Appl Environ Microbiol. 2003;69(6):3085-92.
23. Jussila MM, Jurgens G, Lindstrom K, Suominen L. Genetic diversity of culturable bacteria in oil-contaminated rhizosphere of Galega orientalis. Environ Pollut. 2006;139(2):244-57.
24. Junca H, Pieper DH. Amplified functional DNA restriction analysis to determine catechol 2,3-dioxygenase gene diversity in soil bacteria. J Microbiol Methods. 2003;55(3):697-708.
25. Kuzyakova Y, Friedelb JK, Stahr K. Review of mechanisms and contaminated soil. Chemosphere. 2000;62:1485-95.
26. Obuekwe CO, Al-Jadi ZK, Al-Saleh ES. Hydrocarbon degradation in relation to cell-surface hydrophobicity among bacterial hydrocarbon degraders from petroleum-contaminated Kuwait desert environment. Int Biodeterior Biodegrad. 2009;63(3):273-79.
27. Dashti N, Khanafer M, El-Nemr I, Sorkhoh N, Ali N, Radwan S. The potential of oil-utilizing bacterial consortia associated with legume root nodules for cleaning oily soils. Chemosphere. 2009;74(10):1354-9.
28. Mohamed ME, Al-Dousary M, Hamzah RY, Fuchs G. Isolation and characterization of indigenous thermophilic bacteria active in natural attenuation of bio-hazardous petrochemical pollutants. Int Biodeterior Biodegrad. 2006;58(3-4):213-23.
29. Molina MC, Gonzalez N, Bautista LF, Sanz R, Simarro R, Sanchez I, et al. Isolation and genetic identification of PAH degrading bacteria from a microbial consortium. Biodegradation. 2009;20(6):789-800.
30. McKew BA, Coulon F, Yakimov MM, Denaro R, Genovese M, Smith CJ, et al. Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environ Microbiol. 2007;9(6):1562-71.
31. Frenzel M, James P, Burton S, Rowland SJ, Lappin-Scott HM. Towards bioremediation of toxic unresolved complex mixtures of hydrocarbons: identification of bacteria capable of rapid degradation of alkyltetralins. J Soils Sediments. 2009;9(2):129-36.
32. Kaplan CW, Kitts CL. Bacterial succession in a petroleum land treatment unit. Appl Environ Microbiol. 2004;70(3):1777-86.
33. Haichar FZ, Marol C, Berge O, Rangel-Castro JI, Prosser JI, Balesdent J, et al. Plant host habitat and root exudates shape soil bacterial community structure. ISME J. 2008;2(12):1221-30.
34. Blagodatskaya Ye, Kuzyakov Y. Mechanisms of real and apparent priming effects and their dependence on soil microbial biomass and community structure: critical review. Biol Fertil Soils. 2008;45(2):115-31.
35. Supaphol S, Panichsakpatana S, Trakulnaleamsai S, Tungkananuruk N, Roughjanajirapa P, O'Donnell AG. The selection of mixed microbial inocula in environmental biotechnology: example using petroleum contaminated tropical soils. J Microbiol Methods. 2006;65(3):432-41.
36. Márquez-Rocha FJ, Olmos-Soto J, Concepción Rosano-Hernández M, Muriel-García M. Determination of the hydrocarbon-degrading metabolic capabilities of tropical bacterial isolates. Int Biodeterior Biodegrad. 2005;55(1):17-23.
37. Lappin HM, Greaves MP, Slater JH. Degradation of the herbicide mecoprop [2-(2-methyl-4-chlorophenoxy)propionic Acid] by a synergistic microbial community. Appl Environ Microbiol. 1985;49(2):429-33.
38. Tani A, Ishige T, Sakai Y, Kato N. Gene structures and regulation of the alkane hydroxylase complex in Acinetobacter sp. strain M-1. J Bacteriol. 2001;183(5):1819-23.
39. Tesar M, Reichenauer TG, Sessitsch A. Bacterial rhizosphere populations of black poplar and herbal plants to be used for phytoremediation of diesel fuel. Soil Biol Biochem. 2002;34(12):1883-92.
40. Ryan RP, Monchy S, Cardinale M, Taghavi S, Crossman L, Avison MB, et al. The versatility and adaptation of bacteria from the genus Stenotrophomonas. Nat Rev Microbiol. 2009;7(7):514-25.
41. Gupta A, Singh R, Khare SK, Gupta MN. A solvent tolerant isolate of Enterobacter aerogenes. Bioresour Technol. 2006;97(1):99-103.
42. Toledo FL, Calvo C, Rodelas B, Gonzalez-Lopez J. Selection and identification of bacteria isolated from waste crude oil with polycyclic aromatic hydrocarbons removal capacities. Syst Appl Microbiol. 2006;29(3):244-52.
43. Zhuang X, Chen J, Shim H, Bai Z. New advances in plant growthpromoting rhizobacteria for bioremediation. Environ Int. 2007;33(3):406-13.
44. Das K, Mukherjee AK. Characterization of biochemical properties and biological activities of biosurfactants produced by Pseudomonas aeruginosa mucoid and non-mucoid strains isolated from hydrocarbon-contaminated soil samples. Appl Microbiol Biotechnol. 2005;69(2):192-9.