메뉴 건너뛰기




Volumn 10, Issue 2, 2013, Pages

Physical model of the immune response of bacteria against bacteriophage through the adaptive CRISPR-Cas immune system

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 84876207452     PISSN: 14783967     EISSN: 14783975     Source Type: Journal    
DOI: 10.1088/1478-3975/10/2/025004     Document Type: Article
Times cited : (29)

References (35)
  • 1
    • 0023600057 scopus 로고
    • Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product
    • 0021-9193
    • Ishino Y, Shinagawa H, Marino K, Amemura M and Nakata A 1987 Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product J. Bacteriol. 169 5429-33
    • (1987) J. Bacteriol. , vol.169 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Marino, K.3    Amemura, M.4    Nakata, A.5
  • 2
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
    • 10.1093/nar/gkm360 0305-1048 WEB SERVER
    • Grissa I, Vergnaud G and Pourcel C 2007 CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats Nucleic Acids Res. 35 W52-7
    • (2007) Nucleic Acids Res. , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 3
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas: The immune system of bacteria and archaea
    • 10.1126/science.1179555 0036-8075
    • Horvath P and Barrangou R 2010 CRISPR/Cas: the immune system of bacteria and archaea Science 327 167
    • (2010) Science , vol.327 , Issue.5962 , pp. 167
    • Horvath, P.1    Barrangou, R.2
  • 4
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR a widespread system that provides acquired resistance against phages in bacteria and archaea
    • 10.1038/nrmicro1793 1740-1526
    • Sorek R, Victor K and Hugenholtz P 2008 CRISPR a widespread system that provides acquired resistance against phages in bacteria and archaea Nature Rev. Microbiol. 6 181-6
    • (2008) Nature Rev. Microbiol. , vol.6 , Issue.3 , pp. 181-186
    • Sorek, R.1    Victor, K.2    Hugenholtz, P.3
  • 5
    • 68249102788 scopus 로고    scopus 로고
    • CRISPR-based adaptive and heritable immunity in prokaryotes
    • 10.1016/j.tibs.2009.05.002 0968-0004
    • Oost J, Jore M M, Westra E R, Lundgren M and Brouns S J J 2009 CRISPR-based adaptive and heritable immunity in prokaryotes Trends Biochem. Sci. 34 401-7
    • (2009) Trends Biochem. Sci. , vol.34 , Issue.8 , pp. 401-407
    • Oost, J.1    Jore, M.M.2    Westra, E.R.3    Lundgren, M.4    Brouns, S.J.J.5
  • 6
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • 10.1046/j.1365-2958.2002.02839.x 0950-382X
    • Jansen R, van Embden J D A, Gaastra W and Schouls L M 2002 Identification of genes that are associated with DNA repeats in prokaryotes Mol. Microbiol. 43 1565-75
    • (2002) Mol. Microbiol. , vol.43 , Issue.6 , pp. 1565-1575
    • Jansen, R.1    Van Embden, J.D.A.2    Gaastra, W.3    Schouls, L.M.4
  • 10
    • 33646837331 scopus 로고    scopus 로고
    • Engineered bacteriophage-defence systems in bioprocessing
    • 10.1038/nrmicro1393 1740-1526
    • Sturino J and Klaenhammer T 2006 Engineered bacteriophage-defence systems in bioprocessing Nature Rev. Microbiol. 4 395-404
    • (2006) Nature Rev. Microbiol. , vol.4 , Issue.5 , pp. 395-404
    • Sturino, J.1    Klaenhammer, T.2
  • 11
    • 0034774475 scopus 로고    scopus 로고
    • Phages of dairy bacteria
    • 10.1146/annurev.micro.55.1.283 0066-4227
    • Brüssow H 2001 Phages of dairy bacteria Annu. Rev. Microbiol. 55 283-303
    • (2001) Annu. Rev. Microbiol. , vol.55 , Issue.1 , pp. 283-303
    • Brüssow, H.1
  • 12
    • 0036693004 scopus 로고    scopus 로고
    • Comparative genomics of phages and prophages in lactic acid bacteria
    • 10.1023/A:1020676825358 0003-6072
    • Desiere F, Lucchini S, Canchaya C, Ventura M and Brüssow H 2002 Comparative genomics of phages and prophages in lactic acid bacteria Antonie Van Leeuwenhoek 82 73-91
    • (2002) Antonie Van Leeuwenhoek , vol.82 , Issue.1-4 , pp. 73-91
    • Desiere, F.1    Lucchini, S.2    Canchaya, C.3    Ventura, M.4    Brüssow, H.5
  • 15
    • 79955574254 scopus 로고    scopus 로고
    • Structural basis for CRISPR RNA-guided DNA recognition by Cascade
    • 10.1038/nsmb.2019 1545-9993
    • Jore M et al 2011 Structural basis for CRISPR RNA-guided DNA recognition by Cascade Nature Struct. Mol. Biol. 18 529-36
    • (2011) Nature Struct. Mol. Biol. , vol.18 , Issue.5 , pp. 529-536
    • Jore, M.1
  • 17
    • 59749085509 scopus 로고    scopus 로고
    • Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism
    • 10.1042/BST0370023 0300-5127
    • Shah S A, Hansen N R and Garrett R A 2009 Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism Biochem. Soc. Trans. 37 23-8
    • (2009) Biochem. Soc. Trans. , vol.37 , Issue.1 , pp. 23-28
    • Shah, S.A.1    Hansen, N.R.2    Garrett, R.A.3
  • 18
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA
    • 10.1126/science.1165771 0036-8075
    • Marraffini L A and Sontheimer E J 2008 CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA Science 322 1843-5
    • (2008) Science , vol.322 , Issue.5909 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 19
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • 10.1038/nrg2749 1471-0056
    • Marraffini L A and Sontheimer E J 2010 CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea Nature Rev. Genetics 11 181-90
    • (2010) Nature Rev. Genetics , vol.11 , Issue.3 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 21
    • 77957935381 scopus 로고    scopus 로고
    • CRISPR/Cas system and its role in phage-bacteria interactions
    • 10.1146/annurev.micro.112408.134123 0066-4227
    • Deveau H, Garneau J E and Moineau S 2010 CRISPR/Cas system and its role in phage-bacteria interactions Annu. Rev. Microbiol. 64 475-93
    • (2010) Annu. Rev. Microbiol. , vol.64 , Issue.1 , pp. 475-493
    • Deveau, H.1    Garneau, J.E.2    Moineau, S.3
  • 22
    • 78650244167 scopus 로고    scopus 로고
    • Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
    • 10.1111/j.1365-2958.2010.07452.x 0950-382X
    • Gudbergsdottir S, Deng L, Chen Z, Jensen J V K, Jensen L R, She Q and Garrett R A 2011 Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers Mol. Microbiol. 79 35-49
    • (2011) Mol. Microbiol. , vol.79 , Issue.1 , pp. 35-49
    • Gudbergsdottir, S.1    Deng, L.2    Chen, Z.3    Jensen, J.V.K.4    Jensen, L.R.5    She, Q.6    Garrett, R.A.7
  • 23
    • 44449133775 scopus 로고    scopus 로고
    • Virus population dynamics and acquired virus resistance in natural microbial communities
    • 10.1126/science.1157358 0036-8075
    • Andersson A F and Banfield J F 2008 Virus population dynamics and acquired virus resistance in natural microbial communities Science 320 1047-50
    • (2008) Science , vol.320 , Issue.5879 , pp. 1047-1050
    • Andersson, A.F.1    Banfield, J.F.2
  • 24
    • 77957124941 scopus 로고    scopus 로고
    • Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats)
    • 10.1103/PhysRevLett.105.128102 0031-9007 128102
    • He J and Deem M W 2010 Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats) Phys. Rev. Lett. 105 128102
    • (2010) Phys. Rev. Lett. , vol.105 , Issue.12
    • He, J.1    Deem, M.W.2
  • 25
    • 38149061877 scopus 로고    scopus 로고
    • Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses
    • Tyson G W and Banfield J F 2008 Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses Environ. Microbiol. 10 200-7
    • (2008) Environ. Microbiol. , vol.10 , pp. 200-207
    • Tyson, G.W.1    Banfield, J.F.2
  • 26
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • 10.1021/j100540a008 0022-3654
    • Gillespie D T 1977 Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81 2340-61
    • (1977) J. Phys. Chem. , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 27
    • 77958590947 scopus 로고    scopus 로고
    • CRISPR associated diversity within a population of Sulfolobus islandicus
    • 10.1371/journal.pone.0012988 1932-6203
    • Held N L, Herrera A, Cadillo-Quiroz H and Whitaker R J 2010 CRISPR associated diversity within a population of Sulfolobus islandicus PLoS ONE 5 e12988
    • (2010) PLoS ONE , vol.5 , Issue.9 , pp. 12988
    • Held, N.L.1    Herrera, A.2    Cadillo-Quiroz, H.3    Whitaker, R.J.4
  • 28
    • 58349087246 scopus 로고    scopus 로고
    • Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes
    • 10.1371/journal.pone.0004169 1932-6203
    • Heidelberg J F, Nelson W C, Schoenfeld T and Bhays D 2009 Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes PLoS ONE 4 e4169
    • (2009) PLoS ONE , vol.4 , Issue.1 , pp. 4169
    • Heidelberg, J.F.1    Nelson, W.C.2    Schoenfeld, T.3    Bhays, D.4
  • 29
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas system in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
    • 10.1146/annurev-genet-110410-132430 0066-4197
    • Bhaya D, Davison M and Barrangou R 2011 CRISPR-Cas system in bacteria and archaea: versatile small RNAs for adaptive defense and regulation Annu. Rev. Genet. 45 273-97
    • (2011) Annu. Rev. Genet. , vol.45 , Issue.1 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 30
    • 84863491748 scopus 로고    scopus 로고
    • Multiscale model of CRISPR-induced coevolutionary dynamics: Diversification at the interface of Lamarck and Darwin
    • 10.1111/j.1558-5646.2012.01595.x 0014-3820
    • Childs L M, Held N L, Young Mark J, Whitaker R J and Weitz J S 2012 Multiscale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin Evolution 66 2015-29
    • (2012) Evolution , vol.66 , Issue.7 , pp. 2015-2029
    • Childs, L.M.1    Held, N.L.2    Young Mark, J.3    Whitaker, R.J.4    Weitz, J.S.5
  • 31
    • 80054971915 scopus 로고    scopus 로고
    • Targeted bacterial immunity buffers phage diversity
    • 10.1128/JVI.05222-11 0022-538X
    • Haerter J O, Trusina A and Sneppen K 2011 Targeted bacterial immunity buffers phage diversity J. Virol. 85 10554
    • (2011) J. Virol. , vol.85 , Issue.20 , pp. 10554
    • Haerter, J.O.1    Trusina, A.2    Sneppen, K.3
  • 32
    • 84865798438 scopus 로고    scopus 로고
    • Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus
    • 10.1128/mBio.00126-12 2150-7511
    • Haerter J O and Sneppen K 2012 Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus mBio 3 e00126-12
    • (2012) MBio , vol.3 , Issue.4
    • Haerter, J.O.1    Sneppen, K.2
  • 33
    • 84864519172 scopus 로고    scopus 로고
    • Coexistence of phage and bacteria on the boundary of self-organized refuges
    • 10.1073/pnas.1200771109 0027-8424
    • Heilmann S, Sneppen K and Krishna S 2012 Coexistence of phage and bacteria on the boundary of self-organized refuges Proc. Natl Acad. Sci. 109 12828-33
    • (2012) Proc. Natl Acad. Sci. , vol.109 , Issue.31 , pp. 12828-12833
    • Heilmann, S.1    Sneppen, K.2    Krishna, S.3
  • 35
    • 78449240715 scopus 로고    scopus 로고
    • Nasty viruses and costly plasmids, population dynamics, and the conditions for establishing and maintaining CRISPR-mediated adaptive immunity in bacteria
    • 10.1371/journal.pgen.1001171 1553-7404
    • Levin B R 2010 Nasty viruses and costly plasmids, population dynamics, and the conditions for establishing and maintaining CRISPR-mediated adaptive immunity in bacteria PLoS Genetic 6 e1001171
    • (2010) PLoS Genetic , vol.6 , Issue.10 , pp. 1001171
    • Levin, B.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.