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Volumn 41, Issue 1, 2013, Pages 8-16

Isolation and characterization of a novel agar degrading bacterium, Alteromonas macleodii subsp. GNUM08120, from red macroalgae

Author keywords

Agarase; Alteromonas macleodii; Phylogenetic tree; Red macroalgae

Indexed keywords

AGAR; CARBON; GLUCOSE; RNA 16S;

EID: 84876205072     PISSN: 1598642X     EISSN: None     Source Type: Journal    
DOI: 10.4014/kjmb.1208.08001     Document Type: Article
Times cited : (5)

References (33)
  • 1
    • 0028069031 scopus 로고
    • Glucose repression in Streptomyces coelicolor A3(2): A likely regulatory role for glucose kinase
    • Angell, S., C. G. Lewis, M. J. Buttner, and M. J. Bibb. 1994. Glucose repression in Streptomyces coelicolor A3(2): a likely regulatory role for glucose kinase. Mol. Gen. Genet. 244: 135-143. (Pubitemid 24234749)
    • (1994) Molecular and General Genetics , vol.244 , Issue.2 , pp. 135-143
    • Angell, S.1    Lewis, C.G.2    Buttner, M.J.3    Bibb, M.J.4
  • 3
    • 0030971501 scopus 로고    scopus 로고
    • Microbial xylanolytic enzyme system: Properties and applications
    • Bajpai, P. 1997. Microbial xylanolytic enzyme system: properties and applications. Adv. Appl. Microbiol. 43: 141-194. (Pubitemid 27186674)
    • (1997) Advances in Applied Microbiology , vol.43 , pp. 141-194
    • Bajpai, P.1
  • 5
    • 0034882564 scopus 로고    scopus 로고
    • Microbial xylanases and their industrial applications: A review
    • DOI 10.1007/s002530100704
    • Beg, Q. K., M. Kapoor, L. Mahajan, and G. S. Hoondal. 2001. Microbial xylanases and their industrial applications: a review. Appl. Micriobiol. Biotechnol. 56: 326-338. (Pubitemid 32763342)
    • (2001) Applied Microbiology and Biotechnology , vol.56 , Issue.3-4 , pp. 326-338
    • Beg, Q.K.1    Kapoor, M.2    Mahajan, L.3    Hoondal, G.S.4
  • 6
    • 84862919347 scopus 로고    scopus 로고
    • Isolation and characterization of starch-hydrolyzing Pseudoalteromonas sp. A-3 from the coastal sea water of Daecheon, Republic of Korea
    • Chi, W. J., D. Y. Park, S. C. Jeong, Y. K. Chang, and S. K. Hong. 2011. Isolation and characterization of starch-hydrolyzing Pseudoalteromonas sp. A-3 from the coastal sea water of Daecheon, Republic of Korea. Korean J. Microbiol. Biotech. 39: 317-323.
    • (2011) Korean J. Microbiol. Biotech. , vol.39 , pp. 317-323
    • Chi, W.J.1    Park, D.Y.2    Jeong, S.C.3    Chang, Y.K.4    Hong, S.K.5
  • 7
    • 84862869758 scopus 로고    scopus 로고
    • Agar degradation by microorganisms and agar-degrading enzymes
    • Chi, W. J., Y. K. Chang, and S. K. Hong. 2012. Agar degradation by microorganisms and agar-degrading enzymes. Appl. Microbiol. Biotechnol. 94: 917-930.
    • (2012) Appl. Microbiol. Biotechnol. , vol.94 , pp. 917-930
    • Chi, W.J.1    Chang, Y.K.2    Hong, S.K.3
  • 8
    • 34250724454 scopus 로고    scopus 로고
    • Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanense estuary
    • Chiu, H. H., W. Y. Shieh, S. Y. Lin, C. M. Tseng, P. W. Chiang, and I. Wagner-Dobler. 2007. Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanense estuary. Int. J. Syst. Evol. Microbiol. 57: 1209-1121.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1209-11121
    • Chiu, H.H.1    Shieh, W.Y.2    Lin, S.Y.3    Tseng, C.M.4    Chiang, P.W.5    Wagner-Dobler, I.6
  • 9
    • 35648991375 scopus 로고    scopus 로고
    • Extaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
    • Chun, J. S., J. H. Lee, Y. Y. Jung, M. J. Kim, S. I. Kim, B. K. Kim, and Y. W. Lim. 2007. Extaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57: 2259-2261.
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 2259-2261
    • Chun, J.S.1    Lee, J.H.2    Jung, Y.Y.3    Kim, M.J.4    Kim, S.I.5    Kim, B.K.6    Lim, Y.W.7
  • 10
    • 0025209804 scopus 로고
    • Precipitation techniques
    • DOI 10.1016/0076-6879(90)82024-V
    • Englard, S. and S. Seifter. 1990. Precipitation techniques. Methods Enzymol. 182: 285-300. (Pubitemid 20154395)
    • (1990) Methods in Enzymology , vol.182 , pp. 285-300
    • Englard, S.1    Seifter, S.2
  • 11
    • 0000461280 scopus 로고
    • Confidence limit on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0032914286 scopus 로고    scopus 로고
    • Purification and characterization of a novel β-agarase from an alkalophilic bacterium, Alteromonas sp. E-1
    • DOI 10.1016/S1389-1723(99)80091-7
    • Kirimura K, N. Masuda, Y. Iwasaki, H. Nakagawa, R. Kobayashi, and S. Usai. 1999. Purification and characterization of a novel β-agarase from an alkalophilic bacterium, Altermonas sp. E-1. J. Biosci. Bioeng. 87: 436-441. (Pubitemid 29239004)
    • (1999) Journal of Bioscience and Bioengineering , vol.87 , Issue.4 , pp. 436-441
    • Kirimura, K.1    Masuda, N.2    Iwasaki, Y.3    Nakagawa, H.4    Kobayashi, R.5    Usami, S.6
  • 16
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematic
    • Komagata, K. and K. Suzuki. 1987. Lipid and cell-wall analysis in bacterial systematic. Methods Microbiol. 19: 161-207.
    • (1987) Methods Microbiol. , vol.19 , pp. 161-207
    • Komagata, K.1    Suzuki, K.2
  • 17
    • 0028223185 scopus 로고
    • Glucose kinase has a regulatory role in carbon catabolite repression in Streptomyces coelicolor
    • Kwakman, J. H. and P. W. Postma. 1994. Glucose kinase has a regulatory role in carbon catabolite repression in Streptomyces coelicolor. J. Bacteriol. 176: 2694-2698. (Pubitemid 24139051)
    • (1994) Journal of Bacteriology , vol.176 , Issue.9 , pp. 2694-2698
    • Kwakman, J.H.J.M.1    Postma, P.W.2
  • 18
    • 0026446052 scopus 로고
    • Purification and properties of an extracellular agarase from Alteromonas sp. strain C-1
    • Leon, O., L. Quintana, G. Peruzzzo, and J. C. Siebe. 1992. Purification and properties of an extracellular agarase from Alteromonas sp. strain C-1. Appl. Environ. Microbiol. 58: 4060-4063.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 4060-4063
    • Leon, O.1    Quintana, L.2    Peruzzzo, G.3    Siebe, J.C.4
  • 20
    • 27844577677 scopus 로고    scopus 로고
    • Alteromonas hispanica sp. nov., a polyunsaturated-fatty-acid-producing, halophilic bacterium isolated from Fuente de Piedra, southern Spain
    • DOI 10.1099/ijs.0.63809-0, 63809
    • Martinez-Checa, F., W. Bejar, I. Llamas, A. del Moral, and E. Quesda. 2005. Alteromonas hispanica sp. nov., a polyunsaturated-fatty-acid-producing, halophilic bacterium isolated from Fuente de Piedra, southern Spain. Int. J. Syst. Evol. Microbiol. 55: 2385-2390. (Pubitemid 41646419)
    • (2005) International Journal of Systematic and Evolutionary Microbiology , vol.55 , Issue.6 , pp. 2385-2390
    • Martinez-Checa, F.1    Bejar, V.2    Llamas, I.3    Del, M.A.4    Quesada, E.5
  • 21
    • 0002530820 scopus 로고
    • Polysaccharides of the seaweeds
    • Lobban, C, and M. Wynne, (eds) University of California Press, Berkeley
    • McCandless, E. 1981. Polysaccharides of the seaweeds. In: Lobban, C, and M. Wynne. (eds) The biology of seaweeds. University of California Press, Berkeley, pp. 559-588.
    • (1981) The Biology of Seaweeds , pp. 559-588
    • McCandless, E.1
  • 22
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah, M., U. Premachandran, and W. B. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 23
    • 0000869233 scopus 로고
    • Bacterial identification by gas chromatography of whole cell fatty acid
    • Miller, L. and T. Berger. 1985. Bacterial identification by gas chromatography of whole cell fatty acid. Hewlett-Packard Application note. pp. 228-241.
    • (1985) Hewlett-Packard Application Note , pp. 228-241
    • Miller, L.1    Berger, T.2
  • 24
    • 84855929228 scopus 로고    scopus 로고
    • Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
    • Miyazono, K., N. Tabei, S. Morita, Y. Ohnishi, S. Horinouchi, and M. Tanokura. 2012. Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus. J. Bacteriol. 194: 607-616.
    • (2012) J. Bacteriol. , vol.194 , pp. 607-616
    • Miyazono, K.1    Tabei, N.2    Morita, S.3    Ohnishi, Y.4    Horinouchi, S.5    Tanokura, M.6
  • 25
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • Miller, G. L. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 31: 426-428.
    • (1959) Anal. Chem. , vol.31 , pp. 426-428
    • Miller, G.L.1
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0001859086 scopus 로고    scopus 로고
    • Identification of bacteria by gas chromatography of cellular fatty acids
    • Newark, DE: MIDI Inc.
    • Sasser, M. 1997. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, DE: MIDI Inc.
    • (1997) MIDI Technical Note 101
    • Sasser, M.1
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 29
    • 82355186063 scopus 로고    scopus 로고
    • Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2): An endo-type β-agarase producing neoagarotetraose and neoagarohexaose
    • Temuuji, U., W. J. Chi, S. Y. Lee, Y. K. Chang, and S. K. Hong. 2011. Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2): an endo-type β-agarase producing neoagarotetraose and neoagarohexaose. Appl. Microbiol. Biotechnol. 92: 749-759.
    • (2011) Appl. Microbiol. Biotechnol. , vol.92 , pp. 749-759
    • Temuuji, U.1    Chi, W.J.2    Lee, S.Y.3    Chang, Y.K.4    Hong, S.K.5
  • 30
    • 4344563347 scopus 로고    scopus 로고
    • Alteromonas stellipolaris sp. nov., a novel, budding, prosthecate bacterium from Antarctic seas, and emended description of the genus Alteromonas
    • DOI 10.1099/ijs.0.02862-0
    • Van Trappen, S., T. L. Tan, J. Yang, J. Mergaert, and J. Swings. 2004. Alteromonas stellipolaris sp. nov., a novel, budding, prosthecate bacterium from Antarctic seas, and emended description of the genus Alteromonas. Int. J. Syst. Evol. Microbiol. 54: 1157-1163. (Pubitemid 39139833)
    • (2004) International Journal of Systematic and Evolutionary Microbiology , vol.54 , Issue.4 , pp. 1157-1163
    • Van Trappen, S.1    Tan, T.-L.2    Yang, J.3    Mergaert, J.4    Swings, J.5
  • 31
    • 33746745350 scopus 로고    scopus 로고
    • Characterization of a novel β-agarase from marine Alteromonas sp. SY37-12 and its degrading products
    • DOI 10.1007/s00253-005-0207-3
    • Wang, J., H. Mou, X. Jiang, and H. Guan. 2006. Characterization of a novel beta-agarase from marine Altermonas sp. SY37-12 and its degrading products. Appl. Microbiol. Biotechnol. 71: 833-839. (Pubitemid 44162517)
    • (2006) Applied Microbiology and Biotechnology , vol.71 , Issue.6 , pp. 833-839
    • Wang, J.1    Mou, H.2    Jiang, X.3    Guan, H.4
  • 32
    • 0141725825 scopus 로고    scopus 로고
    • Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea
    • Yoon, J. H., I. G. Kim, K. H. Kang, T. K. Oh, and Y. H. Park. 2003. Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea. Int. J. Syst. Evol. Microbiol. 53: 125-130.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 125-130
    • Yoon, J.H.1    Kim, I.G.2    Kang, K.H.3    Oh, T.K.4    Park, Y.H.5
  • 33
    • 4344684113 scopus 로고    scopus 로고
    • Alteromonas litorea sp. nov., a slightly halophilic bacterium isolated from an intertidal sediment of the Yellow Sea in Korea
    • Yoon, J. H., S. H. Yeo, T. K. Oh, and Y. H. Park. 2004. Alteromonas litorea sp. nov., a slightly halophilic bacterium isolated from an intertidal sediment of the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 54: 1197-1201.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1197-1201
    • Yoon, J.H.1    Yeo, S.H.2    Oh, T.K.3    Park, Y.H.4


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