Phylogenetic and population genetic analysis of Ceratocystis radicicola infecting date palms

Journal of Plant Pathology

Volumn 95, Issue 1, 2013, Pages 49-57

  Al Sadi, A M ^a  

^a SULTAN QABOOS UNIVERSITY   (Oman)

Author keywords

AFLP fingerprinting; Genotypic diversity; Phoenix dactylifera

Indexed keywords

CERATOCYSTIS RADICICOLA; PHOENIX DACTYLIFERA;

EID: 84876131811     PISSN: 11254653     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (39)

1. Abdullah S.K., Asensio L., Monfort E., Gomez-Vidal S., Salinas J., Lorca L.V., Jansson H.B., 2009. Incidence of the two date palm pathogens, Thielaviopsis paradoxa and T. punctulata in soil from date palm plantations in Elx, South-East Spain. Journal of Plant Protection Research 49: 276-279.
2. Al-Raisi Y.M., B'Chir M.M., Al-Mandhari A.M., Deadman M.L., Gowen S.R., 2011. First report of Ceratocystis radicicola associated with date palm disease in Oman. New Disease Reports 23: 23.
3. Al-Sa'di A.M., Drenth A., Deadman M., de Cock A.W.A.M., Aitken E.A.B., 2007. Molecular characterization and pathogenicity of Pythium species associated with damping-off in greenhouse cucumber (Cucumis sativus L.) in Oman. Plant Pathology 56: 140-149.
4. Al-Sa'di A.M., Drenth A., Deadman M.L., Aitken E.A.B., 2008. Genetic diversity, aggressiveness and metalaxyl sensitivity of Pythium aphanidermatum populations infecting cucumber in Oman. Plant Pathology 57: 45-56.
5. Al-Sadi A.M., Al-Said F.A., Al-Jabri A.H., Al-Mahmooli I.H., Al-Hinai A.H., de Cock A.W.A.M., 2011a. Occurrence and characterization of fungi and oomycetes transmitted via potting mixtures and organic manures. Crop Protection 30: 38-44.
6. Al-Sadi A.M., Al-Said F.A., Al-Kiyumi K.S., Al-Mahrouqi R.S., Al-Mahmooli I.H., Deadman M.L., 2011b. Etiology and characterization of cucumber vine decline in Oman. Crop Protection 30: 192-197.
7. Al-Sadi A.M., Al-Ghaithi A.G., Al-Balushi Z.M., Al-Jabri A.H., 2012a. Analysis of diversity in Pythium aphanidermatum populations from a single greenhouse reveals phenotypic and genotypic changes over 2006 to 2011. Plant Disease 96: 852-858.
8. Al-Sadi A.M., Al-Jabri A.H., Al-Mazroui S.S., Al-Mahmooli I.H., 2012b. Characterization and pathogenicity of fungi and oomycetes associated with root diseases of date palms in Oman. Crop Protection 37: 1-6.
9. Al-Sadi A.M., Al-Moqbali H., Al-Yahyai R., Al-Said F., 2012c. AFLP data suggest a potential role for the low genetic diversity of acid lime (Citrus aurantifolia) in Oman in the outbreak of witches' broom disease of lime. Euphytica 188: 285-297.
10. Barnes I., Nakabonge G., Roux J., Wingfield B.D., Wingfield M.J., 2005. Comparison of populations of the wilt pathogen Ceratocystis albifundus in South Africa and Uganda. Plant Pathology 54: 189-195.
11. Bliss D.E., 1941. A new species of Ceratostomella on the date palm. Mycologia 33: 468-482.
12. El-Modafar C., 2010. Mechanisms of date palm resistance to Bayoud disease: current state of knowledge and research prospects. Physiological and Molecular Plant Pathology 74: 287-294.
13. Engelbrecht C.J.B., Harrington T.C., Alfenas A.C., Suarez C., 2007. Genetic variation in populations of the cacao wilt pathogen, Ceratocystis cacaofunesta. Plant Pathology 56: 923-933.
14. Excoffier L., Laval G., Schneider S., 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
15. FAO, 2011. FAOSTAT-Agriculture. http://faostat.fao.org/ site/567/default.aspx#ancor.
16. Ferreira E.M., Harrington T.C., Thorpe D.J., Alfenas A.C., 2010. Genetic diversity and interfertility among highly differentiated populations of Ceratocystis fimbriata in Brazil. Plant Pathology 59: 721-735.
17. Grünwald N.J., Goodwin S.B., Milgroom M.G., Fry W.E., 2003. Analysis of genotypic diversity data for populations of microorganisms. Phytopathology 93: 738-746.
18. Harrington T.C., Ferreira E.M., Alfenas A.C., Mizubuti E., 2011. Movement of genotypes of Ceratocystis fimbriata within and among Eucalyptus plantations in Brazil. Phytopathology 101: 1005-1012.
19. Kile G.A., 1993. Plant diseases caused by species of Ceratocystis sensu stricto and Chalara. In: Wingfield M.J., Seifert K.A., Webber J.F. (eds). Ceratocystis and Ophiostoma: Taxonomy, Ecology and Pathogenicity, pp. 173-183. APS Press, St. Paul, MN, USA.
20. Lee S.B., Taylor J.W., 1990. Isolation of DNA from fungal mycelia and single spores. In: Innis M.A., Gelfand D.H., Sninsky J.J., White T.J. (eds). PCR protocols: A Guide to Methods and Applications, pp. 282-287. Academic Press, New York, NY, USA.
21. Linde C., Smit W.A., 1999. First report of Rhizosis caused by Ceratocystis radicicola on date palms in South Africa. Plant Disease 83: 880.
22. Marin M., Preisig O., Wingfield B.D., Kirisits T., Wingfield M.J., 2009. Single sequence repeat markers reflect diversity and geographic barriers in Eurasian populations of the conifer pathogen Ceratocystis polonica. Forest Pathology 39: 249-265.
23. Morin C., Breuil C., Bernier L., 2004. Genetic variability and structure of Canadian populations of the sapstain fungus Ceratocystis resinifera. Phytopathology 94: 1323-1330.
24. Morton J.F., 1987. Date. In: Morton J.F. (ed.). Fruits of Warm Climates, pp. 5-11. Florida Flair Books, Miami, FL, USA.
25. Nei M., 1973. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences USA 70: 3321-3323.
26. Nei M., 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
27. Paulin-Mahady A.E., Harrington T.C., McNew D., 2002. Phylogenetic and taxonomic evaluation of Chalara, Chalaropsisa and Thielaviopsis anamorphs associated with Ceratocystis. Mycologia 94: 62-72.
28. Rohlf F.J., 2009. NTSYSpc: numerical taxonomy system. ver. 2.21c. Exeter Software, Setauket, NY, USA.
29. Roux J., Harrington T.C., Steimel J.P., Wingfield M.J., 2001. Genetic variation in the wattle wilt pathogen Ceratocystis albofundus. Mycoscience 42: 327-332.
30. Stoddart J.A., Taylor J.F., 1988. Genotypic diversity: estimation and prediction in samples. Genetics 118: 705-711.
31. Suleman P., Al-Musallam A., Menezes C.A., 2001. The effect of solute potential and water stress on black scorch caused by Chalara paradoxa and Chalara radicicola on date palms. Plant Disease 85: 80-83.
32. Suleman P., Al-Musallam A., Menezes C.A., 2002. The effect of biofungcide Mycostop on Ceratocystis radicicola, the casual agent of black scorch on date palm. Biocontrol 47: 207-216.
33. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S., 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
34. Thompson J.D., Higgins D.G., Gibson T.J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
35. van Wyk M., van der Merwe N.A., Roux J., Wingfield B.D., Kamgan G.N., Wingfield M.J., 2006. Population genetic analyses suggest that the Eucalyptus fungal pathogen Ceratocystis fimbriata has been introduced into South Africa. South African Journal of Science 102: 259-263.
36. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., Zabeau M., 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
37. White T.J., Bruns T., Lee S., Taylor J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., White T.J. (eds). PCR protocols: A Guide to Methods and Applications, pp. 315-322. Academic Press, New York, NY, USA.
38. Yeh R.C., Boyle T.J.B., 1997. Population genetic analysis of codominant and dominant markers and quantitative traits. Belgian Journal of Botany 129: 157.
39. Zaid A., de Wet P.F., Djerbi M., Oihabi A., 2002. Diseases and pests of date palms. In: Zaid A., Arias-Jimenez E. (eds). Date Palm Cultivation, pp. 227-281. FAO Publication Division Rome, Italy.