Systemic biological analysis of the mutations in two distinct HIV-1mt genomes occurred during replication in macaque cells

Microbes and Infection

Volumn 15, Issue 4, 2013, Pages 319-328

  Nomaguchi, Masako ^a   Doi, Naoya ^a   Fujiwara, Sachi ^a   Saito, Akatsuki ^b   Akari, Hirofumi ^b   Nakayama, Emi E ^c   Shioda, Tatsuo ^c   Yokoyama, Masaru ^d   Sato, Hironori ^d   Adachi, Akio ^a  

^a UNIVERSITY OF TOKUSHIMA   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c OSAKA UNIVERSITY   (Japan)

^d NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

Author keywords

Adaptive mutation; Env gp120; HIV 1; HIV 1mt; Macaque cells; Pol IN

Indexed keywords

GLYCOPROTEIN GP 120; INTEGRASE;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTINUOUS CULTURE; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN TISSUE; LYMPHOCYTE; MOLECULAR CLONING; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN INTERACTION; RHESUS MONKEY; VIROGENESIS; VIRUS ATTACHMENT; VIRUS CELL INTERACTION; VIRUS GENOME; VIRUS MUTATION; VIRUS REPLICATION;

ADAPTATION, BIOLOGICAL; ANIMALS; CELL LINE; DNA MUTATIONAL ANALYSIS; GENOME, VIRAL; HIV ENVELOPE PROTEIN GP120; HIV-1; HUMANS; MACACA; POL GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; SERIAL PASSAGE; VIRUS REPLICATION;

HUMAN IMMUNODEFICIENCY VIRUS 1; PRIMATES;

EID: 84876092753     PISSN: 12864579     EISSN: 1769714X     Source Type: Journal    
DOI: 10.1016/j.micinf.2013.01.005     Document Type: Article

References (32)

1. Mansky L.M., Temin H.M. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 1995, 69:5087-5094.
2. Levy D.N., Aldrovandi G.M., Kutsch O., Shaw G.M. Dynamics of HIV-1 recombination in its natural target cells. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:4204-4209.
3. Coffin J.M. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 1995, 267:483-489.
4. Malim M.H., Emerman M. HIV-1 sequence variation: drift, shift, and attenuation. Cell 2001, 104:469-472.
5. van Opijnen T., Berkhout B. The host environment drives HIV-1 fitness. Rev. Med. Virol. 2005, 15:219-233.
6. Carlson J.M., Brumme Z.L. HIV evolution in response to HLA-restricted CTL selection pressures: a population-based perspective. Microbes Infect. 2008, 10:455-461.
7. Holmes R.K., Malim M.H., Bishop K.N. APOBEC-mediated viral restriction: not simply editing?. Trends Biochem. Sci. 2007, 32:118-128.
8. Luban J. Cyclophilin A, TRIM5, and resistance to human immunodeficiency virus type 1 infection. J. Virol. 2007, 81:1054-1061.
9. Huthoff H., Towers G.J. Restriction of retroviral replication by APOBEC3G/F and TRIM5alpha. Trends Microbiol. 2008, 16:612-619.
10. Tokarev A., Skasko M., Fitzpatrick K., Guatelli J. Antiviral activity of the interferon-induced cellular protein BST-2/tetherin. AIDS Res. Hum. Retroviruses 2009, 25:1197-1210.
11. Sawyer S.L., Emerman M., Malik H.S. Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G. PLoS Biol. 2004, 2:E275.
12. Sawyer S.L., Wu L.I., Emerman M., Malik H.S. Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:2832-2837.
13. McNatt M.W., Zang T., Hatziioannou T., Bartlett M., Fofana I.B., Johnson W.E., Neil S.J., Bieniasz P.D. Species-specific activity of HIV-1 Vpu and positive selection of tetherin transmembrane domain variants. PLoS Pathog. 2009, 5:e1000300.
14. Kamada K., Igarashi T., Martin M.A., Khamsri B., Hatcho K., Yamashita T., Fujita M., Uchiyama T., Adachi A. Generation of HIV-1 derivatives that productively infect macaque monkey lymphoid cells. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:16959-16964.
15. Igarashi T., Iyengar R., Byrum R.A., Buckler-White A., Dewar R.L., Buckler C.E., Lane H.C., Kamada K., Adachi A., Martin M.A. Human immunodeficiency virus type 1 derivative with 7% simian immunodeficiency virus genetic content is able to establish infections in pig-tailed macaques. J. Virol. 2007, 81:11549-11552.
16. Yamashita T., Doi N., Adachi A., Nomaguchi M. Growth ability in simian cells of monkey cell-tropic HIV-1 is greatly affected by downstream region of the vif gene. J. Med. Invest. 2008, 55:236-240.
17. Nomaguchi M., Doi N., Kamada K., Adachi A. Species barrier of HIV-1 and its jumping by virus engineering. Rev. Med. Virol. 2008, 18:261-275.
18. Kimura M. Evolutionary rate at the molecular level. Nature 1968, 217:624-626.
19. Lebkowski J.S., Clancy S., Calos M.P. Simian virus 40 replication in adenovirus-transformed human cells antagonizes gene expression. Nature 1985, 317:169-171.
20. Akari H., Fukumori T., Iida S., Adachi A. Induction of apoptosis in Herpesvirus saimiri-immortalized T lymphocytes by blocking interaction of CD28 with CD80/CD86. Biochem. Biophys. Res. Commun. 1999, 263:352-356.
21. Doi N., Fujiwara S., Adachi A., Nomaguchi M. Growth ability in various macaque cell lines of HIV-1 with simian cell-tropism. J. Med. Invest. 2010, 57:284-292.
22. Adachi A., Gendelman H.E., Koenig S., Folks T., Willey R., Rabson A., Martin M.A. Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone. J. Virol. 1986, 59:284-291.
23. Willey R.L., Smith D.H., Lasky L.A., Theodore T.S., Earl P.L., Moss B., Capon D.J., Martin M.A. In vitro mutagenesis identifies a region within the envelope gene of the human immunodeficiency virus that is critical for infectivity. J. Virol. 1988, 62:139-147.
24. O'Doherty U., Swiggard W.J., Malim M.H. Human immunodeficiency virus type 1 spinoculation enhances infection through virus binding. J. Virol. 2000, 74:10074-10080.
25. van Opijnen T., de Ronde A., Boerlijst M.C., Berkhout B. Adaptation of HIV-1 depends on the host-cell environment. PLoS One 2007, 2:e271.
26. Carrillo A., Ratner L. Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: role of the V3 loop and C4 envelope determinants. J. Virol. 1996, 70:1301-1309.
27. Hoffman N.G., Seillier-Moiseiwitsch F., Ahn J., Walker J.M., Swanstrom R. Variability in the human immunodeficiency virus type 1 gp120 Env protein linked to phenotype-associated changes in the V3 loop. J. Virol. 2002, 76:3852-3864.
28. Lobritz M.A., Marozsan A.J., Troyer R.M., Arts E.J. Natural variation in the V3 crown of human immunodeficiency virus type 1 affects replicative fitness and entry inhibitor sensitivity. J. Virol. 2007, 81:8258-8269.
29. Saito A., Nomaguchi M., Iijima S., Kuroishi A., Yoshida T., Lee Y.J., Hayakawa T., Kono K., Nakayama E.E., Shioda T., Yasutomi Y., Adachi A., Matano T., Akari H. Improved capacity of a monkey-tropic HIV-1 derivative to replicate in cynomolgus monkeys with minimal modifications. Microbes Infect. 2011, 13:58-64.
30. Nomaguchi M., Yokoyama M., Kono K., Nakayama E.E., Shioda T., Saito A., Akari H., Yasutomi Y., Matano T., Sato H., Adachi A. Gag-CA Q110D mutation elicits TRIM-independent enhancement of HIV-1mt replication in macaque cells. Microbes Infect. 2013, 15:56-65.
31. Bibollet-Ruche F., Heigele A., Keele B.F., Easlick J.L., Decker J.M., Takehisa J., Learn G., Sharp P.M., Hahn B.H., Kirchhoff F. Efficient SIVcpz replication in human lymphoid tissue requires viral matrix protein adaptation. J. Clin. Invest. 2012, 122:1644-1652.
32. Kawamura M., Ishizaki T., Ishimoto A., Shioda T., Kitamura T., Adachi A. Growth ability of human immunodeficiency virus type 1 auxiliary gene mutants in primary blood macrophage cultures. J. Gen. Virol. 1994, 75:2427-2431.