-
1
-
-
80052150179
-
Origins of the E. Coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK: Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N Engl J Med 2011; 365: 709-717.
-
(2011)
N Engl J Med
, vol.365
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
Bashir, A.4
Boisen, N.5
Scheutz, F.6
Paxinos, E.E.7
Sebra, R.8
Chin, C.S.9
Iliopoulos, D.10
Klammer, A.11
Peluso, P.12
Lee, L.13
Kislyuk, A.O.14
Bullard, J.15
Kasarskis, A.16
Wang, S.17
Eid, J.18
Rank, D.19
Redman, J.C.20
Steyert, S.R.21
Frimodt-Møller, J.22
Struve, C.23
Petersen, A.M.24
Krogfelt, K.A.25
Nataro, J.P.26
Schadt, E.E.27
Waldor, M.K.28
more..
-
2
-
-
80052173621
-
E. Coli O104:H4 Genome Analysis Crowd-Sourcing Consortium: Open-source genomic analysis of Shiga toxin-producing E. Coli O104:H4
-
Rohde H, Qin J, Cui Y, Li D, Loman NJ, Hentschke M, Chen W, Pu F, Peng Y, Li J, Xi F, Li S, Li Y, Zhang Z, Yang X, Zhao M, Wang P, Guan Y, Cen Z, Zhao X, Christner M, Kobbe R, Loos S, Oh J, Yang L, Danchin A, Gao GF, Song Y, Li Y, Yang H, Wang J, Xu J, Pallen MJ, Wang J, Aepfelbacher M, Yang R; E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium: Open-source genomic analysis of Shiga toxin-producing E. coli O104:H4. N Engl J Med 2011; 365: 718-724.
-
(2011)
N Engl J Med
, Issue.365
, pp. 718-724
-
-
Rohde, H.1
Qin, J.2
Cui, Y.3
Li, D.4
Loman, N.J.5
Hentschke, M.6
Chen, W.7
Pu, F.8
Peng, Y.9
Li, J.10
Xi, F.11
Li, S.12
Li, Y.13
Zhang, Z.14
Yang, X.15
Zhao, M.16
Wang, P.17
Guan, Y.18
Cen, Z.19
Zhao, X.20
Christner, M.21
Kobbe, R.22
Loos, S.23
Oh, J.24
Yang, L.25
Danchin, A.26
Gao, G.F.27
Song, Y.28
Li, Y.29
Yang, H.30
Wang, J.31
Xu, J.32
Pallen, M.J.33
Wang, J.34
Aepfelbacher, M.35
Yang, R.36
more..
-
3
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, Prior K, Szczepanowski R, Ji Y, Zhang W, McLaughlin SF, Henkhaus JK, Leopold B, Bielaszewska M, Prager R, Brzoska PM, Moore RL, Guenther S, Rothberg JM, Karch H: Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One 2011; 6:e22751.
-
(2011)
PLoS One
, vol.6
, pp. e22751
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
Zentz, E.B.4
Leopold, S.R.5
Rico, A.6
Prior, K.7
Szczepanowski, R.8
Ji, Y.9
Zhang, W.10
McLaughlin, S.F.11
Henkhaus, J.K.12
Leopold, B.13
Bielaszewska, M.14
Prager, R.15
Brzoska, P.M.16
Moore, R.L.17
Guenther, S.18
Rothberg, J.M.19
Karch, H.20
more..
-
4
-
-
84858696849
-
Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A Streptococcus
-
Fittipaldi N, Beres SB, Olsen RJ, Kapur V, Shea PR, Watkins ME, Cantu CC, Laucirica DR, Jenkins L, Flores AR, Lovgren M, Ardanuy C, Liñares J, Low DE, Tyrrell GJ, Musser JM: Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A Streptococcus . Am J Pathol 2012; 180: 1522-1534.
-
(2012)
Am J Pathol
, vol.180
, pp. 1522-1534
-
-
Fittipaldi, N.1
Beres, S.B.2
Olsen, R.J.3
Kapur, V.4
Shea, P.R.5
Watkins, M.E.6
Cantu, C.C.7
Laucirica, D.R.8
Jenkins, L.9
Flores, A.R.10
Lovgren, M.11
Ardanuy, C.12
Liñares, J.13
Low, D.E.14
Tyrrell, G.J.15
Musser, J.M.16
-
5
-
-
84858673443
-
Genomic analysis of emm59 group A Streptococcus invasive strains, United States
-
Fittipaldi N, Olsen RJ, Beres SB, Van Beneden C, Musser JM: Genomic analysis of emm59 group A Streptococcus invasive strains, United States. Emerg Infect Dis 2012; 18: 650-652.
-
(2012)
Emerg Infect Dis
, vol.18
, pp. 650-652
-
-
Fittipaldi, N.1
Olsen, R.J.2
Beres, S.B.3
Van Beneden, C.4
Musser, J.M.5
-
6
-
-
84862318037
-
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
-
Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CL, Wilson DJ, Didelot X, O'Connor L, Lay R, Buck D, Kearns AM, Shaw A, Paul J, Wilcox MH, Donnelly PJ, Peto TE, Walker AS, Crook DW: A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance. BMJ Open 2012; 2:pii:e001124.
-
(2012)
BMJ Open
, vol.2
-
-
Eyre, D.W.1
Golubchik, T.2
Gordon, N.C.3
Bowden, R.4
Piazza, P.5
Batty, E.M.6
Ip, C.L.7
Wilson, D.J.8
Didelot, X.9
O'Connor, L.10
Lay, R.11
Buck, D.12
Kearns, A.M.13
Shaw, A.14
Paul, J.15
Wilcox, M.H.16
Donnelly, P.J.17
Peto, T.E.18
Walker, A.S.19
Crook, D.W.20
more..
-
7
-
-
77949463821
-
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
-
Gilmour MW, Graham M, Van Domselaar G, Tyler S, Kent H, Trout-Yakel KM, Larios O, Allen V, Lee B, Nadon C: High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak. BMC Genomics 2010; 11: 120.
-
(2010)
BMC Genomics
, vol.11
, pp. 120
-
-
Gilmour, M.W.1
Graham, M.2
Van Domselaar, G.3
Tyler, S.4
Kent, H.5
Trout-Yakel, K.M.6
Larios, O.7
Allen, V.8
Lee, B.9
Nadon, C.10
-
8
-
-
77952857458
-
Attack of the clones
-
Baldry S: Attack of the clones. Nat Rev Microbiol 2010; 8: 390.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 390
-
-
Baldry, S.1
-
9
-
-
78650623432
-
-
Centers for Disease Control and Prevention (CDC): Update on cholera-Haiti, Dominican Republic, and Florida, 2010
-
Centers for Disease Control and Prevention (CDC): Update on cholera-Haiti, Dominican Republic, and Florida, 2010. MMWR Morb Mortal Wkly Rep 2010; 59: 1637-1641.
-
(2010)
MMWR Morb Mortal Wkly Rep
, vol.59
, pp. 1637-1641
-
-
-
10
-
-
80052597651
-
Population genetics of Vibrio cholerae from Nepal in 2010: Evidence on the origin of the Haitian outbreak
-
Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM: Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. MBio 2011; 2:e00157-11.
-
(2011)
MBio
, vol.2
, pp. e00157-e00211
-
-
Hendriksen, R.S.1
Price, L.B.2
Schupp, J.M.3
Gillece, J.D.4
Kaas, R.S.5
Engelthaler, D.M.6
Bortolaia, V.7
Pearson, T.8
Waters, A.E.9
Upadhyay, B.P.10
Shrestha, S.D.11
Adhikari, S.12
Shakya, G.13
Keim, P.S.14
Aarestrup, F.M.15
-
11
-
-
84930485738
-
V. Cholerae outbreak genomics task force: Comparative genomics of vibrio cholerae from Haiti, Asia, and Africa
-
Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P; V. cholerae Outbreak Genomics Task Force: Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa. Emerg Infect Dis 2011; 17: 2113-2121.
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 2113-2121
-
-
Reimer, A.R.1
Van Domselaar, G.2
Stroika, S.3
Walker, M.4
Kent, H.5
Tarr, C.6
Talkington, D.7
Rowe, L.8
Olsen-Rasmussen, M.9
Frace, M.10
Sammons, S.11
Dahourou, G.A.12
Boncy, J.13
Smith, A.M.14
Mabon, P.15
Petkau, A.16
Graham, M.17
Gilmour, M.W.18
Gerner-Smidt, P.19
-
12
-
-
80053133499
-
Evidence for several waves of global transmission in the seventh cholera pandemic
-
Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JL, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G: Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 2011; 477: 462-465.
-
(2011)
Nature
, vol.477
, pp. 462-465
-
-
Mutreja, A.1
Kim, D.W.2
Thomson, N.R.3
Connor, T.R.4
Lee, J.H.5
Kariuki, S.6
Croucher, N.J.7
Choi, S.Y.8
Harris, S.R.9
Lebens, M.10
Niyogi, S.K.11
Kim, E.J.12
Ramamurthy, T.13
Chun, J.14
Wood, J.L.15
Clemens, J.D.16
Czerkinsky, C.17
Nair, G.B.18
Holmgren, J.19
Parkhill, J.20
Dougan, G.21
more..
-
13
-
-
79955749319
-
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
-
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, et al: Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol 2011; 29: 415-420.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 415-420
-
-
Yilmaz, P.1
Kottmann, R.2
Field, D.3
Knight, R.4
Cole, J.R.5
Amaral-Zettler, L.6
-
14
-
-
84928125759
-
-
Danish Technical University: Perspectives of a global, real-time microbiological genomic identification system-implications for national and global detection and control of infectious diseases, September
-
Danish Technical University: Perspectives of a global, real-time microbiological genomic identification system-implications for national and global detection and control of infectious diseases. Consensus report of an expert meeting, Brussels, September 2011. http://www.food.dtu.dk/upload/fdevareinstituttet/food.dtu.dk/publikationer/2011/consensus%20report%20perspectives%20of%20a%20global,%20real-time.pdf.
-
(2011)
Consensus Report of An Expert Meeting, Brussels
-
-
-
15
-
-
82255186689
-
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
-
Lieberman TD, Michel JB, Aingaran M, Potter-Bynoe G, Roux D, Davis MR Jr, Skurnik D, Leiby N, LiPuma JJ, Goldberg JB, McAdam AJ, Priebe GP, Kishony R: Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat Genet 2011; 43: 1275-1280.
-
(2011)
Nat Genet
, vol.43
, pp. 1275-1280
-
-
Lieberman, T.D.1
Michel, J.B.2
Aingaran, M.3
Potter-Bynoe, G.4
Roux, D.5
Davis, M.R.6
Skurnik, D.7
Leiby, N.8
Lipuma, J.J.9
Goldberg, J.B.10
McAdam, A.J.11
Priebe, G.P.12
Kishony, R.13
-
16
-
-
84858114217
-
High-resolution single nucleotide polymorphism analysis distinguishes recrudescence and reinfection in recurrent invasive nontyphoidal Salmonella Typhimurium disease
-
Okoro CK, Kingsley RA, Quail MA, Kankwatira AM, Feasey NA, Parkhill J, Dougan G, Gordon MA: High-resolution single nucleotide polymorphism analysis distinguishes recrudescence and reinfection in recurrent invasive nontyphoidal Salmonella Typhimurium disease. Clin Infect Dis 2012; 54: 955-963.
-
(2012)
Clin Infect Dis
, vol.54
, pp. 955-963
-
-
Okoro, C.K.1
Kingsley, R.A.2
Quail, M.A.3
Kankwatira, A.M.4
Feasey, N.A.5
Parkhill, J.6
Dougan, G.7
Gordon, M.A.8
-
17
-
-
84859326308
-
Wholegenome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
-
Harris SR, Clarke IN, Seth-Smith HM, Solomon AW, Cutcliffe LT, Marsh P, Skilton RJ, Holland MJ, Mabey D, Peeling RW, Lewis DA, Spratt BG, Unemo M, Persson K, Bjartling C, Brunham R, de Vries HJ, Morré SA, Speksnijder A, Bébéar CM, Clerc M, de Barbeyrac B, Parkhill J, Thomson NR: Wholegenome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nat Genet 2012; 44: 413-419.
-
(2012)
Nat Genet
, vol.44
, pp. 413-419
-
-
Harris, S.R.1
Clarke, I.N.2
Seth-Smith, H.M.3
Solomon, A.W.4
Cutcliffe, L.T.5
Marsh, P.6
Skilton, R.J.7
Holland, M.J.8
Mabey, D.9
Peeling, R.W.10
Lewis, D.A.11
Spratt, B.G.12
Unemo, M.13
Persson, K.14
Bjartling, C.15
Brunham, R.16
De Vries, H.J.17
Morré, S.A.18
Speksnijder, A.19
Bébéar, C.M.20
Clerc, M.21
De Barbeyrac, B.22
Parkhill, J.23
Thomson, N.R.24
more..
-
18
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris SR, Feil EJ, Holden MT, Quail MA, Nickerson EK, Chantratita N, Gardete S, Tavares A, Day N, Lindsay JA, Edgeworth JD, de Lencastre H, Parkhill J, Peacock SJ, Bentley SD: Evolution of MRSA during hospital transmission and intercontinental spread. Science 2010; 327: 469-474.
-
(2010)
Science
, vol.327
, pp. 469-474
-
-
Harris, S.R.1
Feil, E.J.2
Holden, M.T.3
Quail, M.A.4
Nickerson, E.K.5
Chantratita, N.6
Gardete, S.7
Tavares, A.8
Day, N.9
Lindsay, J.A.10
Edgeworth, J.D.11
De Lencastre, H.12
Parkhill, J.13
Peacock, S.J.14
Bentley, S.D.15
-
19
-
-
79951493627
-
On the future of genomic data
-
Kahn SD: On the future of genomic data. Science 2011; 331: 728-729.
-
(2011)
Science
, vol.331
, pp. 728-729
-
-
Kahn, S.D.1
-
20
-
-
80054776462
-
Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing
-
Angiuoli SV, White JR, Matalka M, White O, Fricke WF: Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing. PLoS One 2011; 6:e26624.
-
(2011)
PLoS One
, vol.6
, pp. e26624
-
-
Angiuoli, S.V.1
White, J.R.2
Matalka, M.3
White, O.4
Fricke, W.F.5
-
21
-
-
84863393645
-
Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of Campylobacter jejuni
-
Taboada EN, Ross SL, Mutschall SK, Mackinnon JM, Roberts MJ, Buchanan CJ, Kruczkiewicz P, Jokinen CC, Thomas JE, Nash JH, Gannon VP, Marshall B, Pollari F, Clark CG: Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of Campylobacter jejuni . J Clin Microbiol 2012; 50: 788-797.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 788-797
-
-
Taboada, E.N.1
Ross, S.L.2
Mutschall, S.K.3
Mackinnon, J.M.4
Roberts, M.J.5
Buchanan, C.J.6
Kruczkiewicz, P.7
Jokinen, C.C.8
Thomas, J.E.9
Nash, J.H.10
Gannon, V.P.11
Marshall, B.12
Pollari, F.13
Clark, C.G.14
-
22
-
-
84859643160
-
Oxford nanopore announcement sets sequencing sector abuzz
-
Eisenstein M: Oxford nanopore announcement sets sequencing sector abuzz. Nat Biotechnol 2012; 30: 295-296.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 295-296
-
-
Eisenstein, M.1
|