Lamin-like analogues in plants: The characterization of NMCP1 in Allium cepa

Journal of Experimental Botany

Volumn 64, Issue 6, 2013, Pages 1553-1564

  Ciska, Malgorzata ^a   Masuda, Kiyoshi ^b   Moreno Díaz De La Espina, Susana ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

^b HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Allium cepa; bioinformatics analysis; immunoelectron microscopy; immunofluorescence microscopy; LINC proteins; NMCP1 proteins; nucleoskeleton; phylogenetic analysis; plamina; plant lamina; protein analysis.

Indexed keywords

NUCLEAR PROTEIN; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; BIOLOGY; CELL NUCLEUS; CELL PROLIFERATION; CLASSIFICATION; GENETICS; MERISTEM; METABOLISM; METHODOLOGY; MOLECULAR CLONING; MOLECULAR EVOLUTION; NUCLEAR LAMINA; ONION; PHOSPHORYLATION; PHYLOGENY; PLANT CELL; PLANT ROOT; SOLUBILITY; STRUCTURE ACTIVITY RELATION;

AMINO ACID SEQUENCE; BINDING SITES; CELL NUCLEUS; CELL PROLIFERATION; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; MERISTEM; NUCLEAR LAMINA; NUCLEAR PROTEINS; ONIONS; PHOSPHORYLATION; PHYLOGENY; PLANT CELLS; PLANT PROTEINS; PLANT ROOTS; SOLUBILITY; STRUCTURE-ACTIVITY RELATIONSHIP;

ALLIUM CEPA;

EID: 84876060083     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/ert020     Document Type: Article

References (37)

1. Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Research 37, W202-W208.
2. Berkelman T. 2008. Quantitation of protein in samples prepared for 2-D electrophoresis. Methods in Molecular Biology 424, 43-49.
3. Blumenthal SS, Clark GB, Roux SJ. 2004. Biochemical and immunological characterization of pea nuclear intermediate filament proteins. Planta 218, 965-975.
4. Broers JL, Machiels BM, Kuijpers HJ, Smedts F, van den Kieboom R, Raymond Y, Ramaekers FC. 1997. A- and B-type lamins are differentially expressed in normal human tissues. Histochemistry and Cell Biology 107, 505-517.
5. Dechat T, Adam SA, Taimen P, Shimi T, Goldman RD. 2010a. Nuclear lamins. Cold Spring Harbor Perspectives in Biology 2, a000547.
6. Dechat T, Gesson K, Foisner R. 2010b. Lamina-independent lamins in the nuclear interior serve important functions. Cold Spring Harbor Symposia on Quantitative Biology 75, 533-543.
7. Delorenzi M, Speed T. 2002. An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Bioinformatics 18, 617-625.
8. Dittmer TA, Misteli T. 2011. The lamin protein family. Genome Biology 12, 222.
9. Dittmer TA, Stacey NJ, Sugimoto-Shirasu K, Richards EJ. 2007. LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana. The Plant Cell 19, 2793-2803.
10. Dubois KN, Alsford S, Holden JM, et al.. 2012. NUP-1 is a large coiled-coil nucleoskeletal protein in trypanosomes with lamin-like functions. PLoS Biology 10, e1001287.
11. Erber A, Riemer D, Hofemeister H, Bovenschulte M, Stick R, Panopoulou G, Lehrach H, Weber K. 1999. Characterization of the Hydra lamin and its gene: a molecular phylogeny of metazoan lamins. Journal of Molecular Evolution 49, 260-271.
12. Fiserova J, Kiseleva E, Goldberg MW. 2009. Nuclear envelope and nuclear pore complex structure and organization in tobacco BY-2 cells. The Plant Journal 59, 243-255.
13. Goldberg MW, Fiserova J, Huttenlauch I, Stick R. 2008. A new model for nuclear lamina organization. Biochemical Society Transactions 36, 1339-1343.
14. Goodstein DM, Shu S, Howson R et al.. 2012. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Research 40, D1178-D1186.
15. Graumann K, Runions J, Evans DE. 2010. Characterization of SUN-domain proteins at the higher plant nuclear envelope. The Plant Journal 61, 134-144.
16. Gruber M, Soding J, Lupas AN. 2006. Comparative analysis of coiled-coil prediction methods. Journal of Structural Biology 155, 140-145.
17. Kapinos LE, Schumacher J, Mucke N, Machaidze G, Burkhard P, Aebi U, Strelkov SV, Herrmann H. 2010. Characterization of the head-to-tail overlap complexes formed by human lamin A, B1 and B2 half-minilamin dimers. Journal of Molecular Biology 396, 719-731.
18. Kimura Y, Kuroda C, Masuda K. 2010. Differential nuclear envelope assembly at the end of mitosis in suspension-cultured Apium graveolens cells. Chromosoma 119, 195-204.
19. Kleffmann T, Hirsch-Hoffmann M, Gruissem W, Baginsky S. 2006. plprot: a comprehensive proteome database for different plastid types. Plant and Cell Physiology 47, 432-436.
20. Kruger A, Batsios P, Baumann O, Luckert E, Schwarz H, Stick R, Meyer I, Graf R. 2012. Characterization of NE81, the first lamin-like nucleoskeleton protein in a unicellular organism. Molecular Biology of the Cell 23, 360-370.
21. Lehner CF, Stick R, Eppenberger HM, Nigg EA. 1987. Differential expression of nuclear lamin proteins during chicken development. Journal of Cell Biology 105, 577-587.
22. Masuda K, Haruyama S, Fujino K. 1999. Assembly and disassembly of the peripheral architecture of the plant cell nucleus during mitosis. Planta 210, 165-167.
23. Masuda K, Takahashi S, Nomura K, Arimoto M, Inoue M. 1993. Residual structure and constituent proteins of the peripheral framework of the cell nucleus in somatic embryos from Daucus carota L. Planta 191, 532-540.
24. Masuda K, Xu ZJ, Takahashi S, Ito A, Ono M, Nomura K, Inoue M. 1997. Peripheral framework of carrot cell nucleus contains a novel protein predicted to exhibit a long alpha-helical domain. Experimental Cell Research 232, 173-181.
25. Mejat A, Misteli T. 2010. LINC complexes in health and disease. Nucleus 1, 40-52.
26. Moreno Díaz de la Espina S. 2009. The plant nucleoskeleton. In: I Meier, ed, Functional organization of the plant nucleus . Berlin, Heidelberg: Springer, pp 79-100.
27. Moreno Díaz de la Espina S, Barthellemy I, Cerezuela MA. 1991. Isolation and ultrastructural characterization of the residual nuclear matrix in a plant cell system. Chromosoma 100, 110-117.
28. Moriguchi K, Suzuki T, Ito Y, Yamazaki Y, Niwa Y, Kurata N. 2005. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. The Plant Cell 17, 389-403.
29. Murphy SP, Simmons CR, Bass HW. 2010. Structure and expression of the maize (Zea mays L.) SUN-domain protein gene family: evidence for the existence of two divergent classes of SUN proteins in plants. BMC Plant Biology 10, 269.
30. Oda Y, Fukuda H. 2011. Dynamics of Arabidopsis SUN proteins during mitosis and their involvement in nuclear shaping. The Plant Journal 66, 629-641.
31. Perez-Munive C, Moreno Díaz de la Espina S. 2011. Nuclear spectrin-like proteins are structural actin-binding proteins in plants. Biology of the Cell 103, 145-157.
32. Peter A, Stick R. 2012. Evolution of the lamin protein family: what introns can tell. Nucleus 3, 44-59.
33. Samaniego R, Jeong SY, de la Torre C, Meier I, Moreno Díaz de la Espina S. 2006. CK2 phosphorylation weakens 90 kDa MFP1 association to the nuclear matrix in Allium cepa. Journal of Experimental Botany 57, 113-124.
34. Shimi T, Butin-Israeli V, Adam SA, Hamanaka RB, Goldman AE, Lucas CA, Shumaker DK, Kosak ST, Chandel NS, Goldman RD. 2011. The role of nuclear lamin B1 in cell proliferation and senescence. Genes and Development 25, 2579-2593.
35. Simon DN, Zastrow MS, Wilson KL. 2010. Direct actin binding to A- and B-type lamin tails and actin filament bundling by the lamin A tail. Nucleus 1, 264-272.
36. Tamura K, Hara-Nishimura I. 2011. Involvement of the nuclear pore complex in morphology of the plant nucleus. Nucleus 2, 168-172.
37. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731-2739.