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Volumn 11, Issue 3, 2013, Pages 206-215

Mapping a disordered portion of the Brz2001-binding site on a plant monooxygenase, DWARF4, using a quartz-crystal microbalance biosensor-based T7 phage display

Author keywords

[No Author keywords available]

Indexed keywords

BRASSINOSTEROID; SELF ASSEMBLED MONOLAYER; UNSPECIFIC MONOOXYGENASE;

EID: 84876008991     PISSN: 1540658X     EISSN: 15578127     Source Type: Journal    
DOI: 10.1089/adt.2012.478     Document Type: Article
Times cited : (9)

References (41)
  • 1
    • 77953699074 scopus 로고    scopus 로고
    • Targeting the undruggable proteome: The small molecules of my dreams
    • Crews CM: Targeting the undruggable proteome: the small molecules of my dreams. Chem Biol 2010;17:551-555.
    • (2010) Chem Biol , vol.17 , pp. 551-555
    • Crews, C.M.1
  • 2
    • 77950283408 scopus 로고    scopus 로고
    • Use of phage display technology for the determination of the targets for small-molecule therapeutics
    • Takakusagi Y, Takakusagi K, Sugawara F, Sakaguchi K: Use of phage display technology for the determination of the targets for small-molecule therapeutics. Expert Opin Drug Discov 2010;5:361-389.
    • (2010) Expert Opin Drug Discov , vol.5 , pp. 361-389
    • Takakusagi, Y.1    Takakusagi, K.2    Sugawara, F.3    Sakaguchi, K.4
  • 3
    • 69849099521 scopus 로고    scopus 로고
    • Validation of small-moleculeprotein interactions by the t7 phage display strategy using a quartz-crystal microbalance device
    • Takakusagi Y, Takakusagi K, Sugawara F, Sakaguchi K: [Validation of small-molecule/protein interactions by the T7 phage display strategy using a quartz-crystal microbalance device]. Tanpakushitsu Kakusan Koso 2009;54:1203-1209.
    • (2009) Tanpakushitsu Kakusan Koso , vol.54 , pp. 1203-1209
    • Takakusagi, Y.1    Takakusagi, K.2    Sugawara, F.3    Sakaguchi, K.4
  • 4
    • 84954358539 scopus 로고    scopus 로고
    • Efficient one-cycle affinity selection of binding proteins or peptides specific for a small-molecule using a T7 phage display pool
    • Takakusagi Y, Kuramochi K, Takagi M, et al.: Efficient one-cycle affinity selection of binding proteins or peptides specific for a small-molecule using a T7 phage display pool. Bioorg Med Chem 2008;16:9837-9846.
    • (2008) Bioorg Med Chem , vol.16 , pp. 9837-9846
    • Takakusagi, Y.1    Kuramochi, K.2    Takagi, M.3
  • 5
    • 48449087324 scopus 로고    scopus 로고
    • Identification of a methotrexate-binding peptide from a T7 phage display screen using a QCM device
    • Takakusagi Y, Kuroiwa Y, Sugawara F, Sakaguchi K: Identification of a methotrexate-binding peptide from a T7 phage display screen using a QCM device. Bioorg Med Chem 2008;16:7410-7414.
    • (2008) Bioorg Med Chem , vol.16 , pp. 7410-7414
    • Takakusagi, Y.1    Kuroiwa, Y.2    Sugawara, F.3    Sakaguchi, K.4
  • 6
    • 35348812682 scopus 로고    scopus 로고
    • Identification of C10 biotinylated camptothecin (CPT-10-B) binding peptides using T7 phage display screen on a QCM device
    • Takakusagi Y, Takakusagi K, Kuramochi K, Kobayashi S, Sugawara F, Sakaguchi K: Identification of C10 biotinylated camptothecin (CPT-10-B) binding peptides using T7 phage display screen on a QCM device. Bioorg Med Chem 2007;15:7590-7598.
    • (2007) Bioorg Med Chem , vol.15 , pp. 7590-7598
    • Takakusagi, Y.1    Takakusagi, K.2    Kuramochi, K.3    Kobayashi, S.4    Sugawara, F.5    Sakaguchi, K.6
  • 7
    • 84951279351 scopus 로고
    • The use of quartz oscillators for weighing thin layers and for microweighing
    • Sauerbrey G: The use of quartz oscillators for weighing thin layers and for microweighing. Z Phys 1959;155:206-222.
    • (1959) Z Phys , vol.155 , pp. 206-222
    • Sauerbrey, G.1
  • 8
    • 84865239235 scopus 로고    scopus 로고
    • A survey of the 2010 quartz crystal microbalance literature
    • Speight RE, Cooper MA: A survey of the 2010 quartz crystal microbalance literature. J Mol Recognit 2012;25:451-473.
    • (2012) J Mol Recognit , vol.25 , pp. 451-473
    • Speight, R.E.1    Cooper, M.A.2
  • 9
    • 79959989875 scopus 로고    scopus 로고
    • A survey of the 2006-2009 quartz crystal microbalance biosensor literature
    • Becker B, Cooper MA: A survey of the 2006-2009 quartz crystal microbalance biosensor literature. J Mol Recognit 2011;24:754-787.
    • (2011) J Mol Recognit , vol.24 , pp. 754-787
    • Becker, B.1    Cooper, M.A.2
  • 10
    • 34447498398 scopus 로고    scopus 로고
    • A survey of the 2001 to 2005 quartz crystal microbalance biosensor literature: Applications of acoustic physics to the analysis of biomolecular interactions
    • Cooper MA, Singleton VT: A survey of the 2001 to 2005 quartz crystal microbalance biosensor literature: applications of acoustic physics to the analysis of biomolecular interactions. J Mol Recognit 2007;20:154-184.
    • (2007) J Mol Recognit , vol.20 , pp. 154-184
    • Cooper, M.A.1    Singleton, V.T.2
  • 11
    • 84875980321 scopus 로고    scopus 로고
    • Quantitative analysis of peptide libraries
    • Petrenko VA, Smith GP, (eds.) RSC Publishing, Cambridge, United Kingdom
    • Makowski L. Quantitative analysis of peptide libraries. In: Phage Nanobiotechnology. Petrenko VA, Smith GP, (eds.), pp. 33-54. RSC Publishing, Cambridge, United Kingdom, 2011.
    • (2011) Phage Nanobiotechnology , pp. 33-54
    • Makowski, L.1
  • 12
    • 33644787225 scopus 로고    scopus 로고
    • Phage display reveals multiple contact sites between FhuA, an outer membrane receptor of Escherichia coli, and TonB
    • Carter DM, Gagnon JN, Damlaj M, et al.: Phage display reveals multiple contact sites between FhuA, an outer membrane receptor of Escherichia coli, and TonB. J Mol Biol 2006;357:236-251.
    • (2006) J Mol Biol , vol.357 , pp. 236-251
    • Carter, D.M.1    Gagnon, J.N.2    Damlaj, M.3
  • 13
    • 2442507626 scopus 로고    scopus 로고
    • RELIC-a bioinformatics server for combinatorial peptide analysis and identification of protein-ligand interaction sites
    • Mandava S, Makowski L, Devarapalli S, Uzubell J, Rodi DJ: RELIC-a bioinformatics server for combinatorial peptide analysis and identification of protein-ligand interaction sites. Proteomics 2004;4:1439-1460.
    • (2004) Proteomics , vol.4 , pp. 1439-1460
    • Mandava, S.1    Makowski, L.2    Devarapalli, S.3    Uzubell, J.4    Rodi, D.J.5
  • 15
    • 0032618946 scopus 로고    scopus 로고
    • Similarity between the sequences of taxol-selected peptides and the disordered loop of the anti-apoptotic protein, Bcl-2
    • Rodi DJ, Makowski L: Similarity between the sequences of taxol-selected peptides and the disordered loop of the anti-apoptotic protein, Bcl-2. Pac Symp Biocomput 1999:532-541.
    • (1999) Pac Symp Biocomput , vol.532 , Issue.5 , pp. 41
    • Rodi, D.J.1    Makowski, L.2
  • 16
    • 0033534641 scopus 로고    scopus 로고
    • Screening of a library of phage-displayed peptides identifies human bcl-2 as a taxol-binding protein
    • Rodi DJ, Janes RW, Sanganee HJ, Holton RA, Wallace BA, Makowski L: Screening of a library of phage-displayed peptides identifies human bcl-2 as a taxol-binding protein. J Mol Biol 1999;285:197-203.
    • (1999) J Mol Biol , vol.285 , pp. 197-203
    • Rodi, D.J.1    Janes, R.W.2    Sanganee, H.J.3    Holton, R.A.4    Wallace, B.A.5    Makowski, L.6
  • 17
    • 84860259978 scopus 로고    scopus 로고
    • Intrinsically disordered proteins: From sequence and conformational properties toward drug discovery
    • Rezaei-Ghaleh N, Blackledge M, Zweckstetter M: Intrinsically disordered proteins: from sequence and conformational properties toward drug discovery. ChemBioChem 2012;13:930-950.
    • (2012) ChemBioChem , vol.13 , pp. 930-950
    • Rezaei-Ghaleh, N.1    Blackledge, M.2    Zweckstetter, M.3
  • 18
    • 77955327536 scopus 로고    scopus 로고
    • Intrinsically disordered proteins are potential drug targets
    • Metallo SJ: Intrinsically disordered proteins are potential drug targets. Curr Opin Chem Biol 2010;14:481-488.
    • (2010) Curr Opin Chem Biol , vol.14 , pp. 481-488
    • Metallo, S.J.1
  • 19
  • 20
    • 0033592982 scopus 로고    scopus 로고
    • Analysis of three structurally related antiviral compounds in complex with human rhinovirus 16
    • Hadfield AT, Diana GD, Rossmann MG: Analysis of three structurally related antiviral compounds in complex with human rhinovirus 16. Proc Natl Acad Sci USA 1999;96:14730-14735.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 14730-14735
    • Hadfield, A.T.1    Diana, G.D.2    Rossmann, M.G.3
  • 21
    • 0031683467 scopus 로고    scopus 로고
    • Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites
    • Curry S, Mandelkow H, Brick P, Franks N: Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites. Nat Struct Biol 1998;5:827-835.
    • (1998) Nat Struct Biol , vol.5 , pp. 827-835
    • Curry, S.1    Mandelkow, H.2    Brick, P.3    Franks, N.4
  • 23
    • 0037342214 scopus 로고    scopus 로고
    • Estimating the diversity of peptide populations from limited sequence data
    • Makowski L, Soares A: Estimating the diversity of peptide populations from limited sequence data. Bioinformatics 2003;19:483-489.
    • (2003) Bioinformatics , vol.19 , pp. 483-489
    • Makowski, L.1    Soares, A.2
  • 24
    • 0036409329 scopus 로고    scopus 로고
    • Quantitative assessment of peptide sequence diversity in M13 combinatorial peptide phage display libraries
    • Rodi DJ, Soares AS, Makowski L: Quantitative assessment of peptide sequence diversity in M13 combinatorial peptide phage display libraries. J Mol Biol 2002;322:1039-1052.
    • (2002) J Mol Biol , vol.322 , pp. 1039-1052
    • Rodi, D.J.1    Soares, A.S.2    Makowski, L.3
  • 25
    • 0034798240 scopus 로고    scopus 로고
    • A specific brassinosteroid biosynthesis inhibitor, Brz2001: Evaluation of its effects on Arabidopsis, cress, tobacco, and rice
    • Sekimata K, Kimura T, Kaneko I, et al.: A specific brassinosteroid biosynthesis inhibitor, Brz2001: evaluation of its effects on Arabidopsis, cress, tobacco, and rice. Planta 2001;213:716-721.
    • (2001) Planta , vol.213 , pp. 716-721
    • Sekimata, K.1    Kimura, T.2    Kaneko, I.3
  • 27
    • 0035854669 scopus 로고    scopus 로고
    • Selective interaction of triazole derivatives with DWF4, a cytochrome P450 monooxygenase of the brassinosteroid biosynthetic pathway, correlates with brassinosteroid deficiency in planta
    • Asami T, Mizutani M, Fujioka S, et al.: Selective interaction of triazole derivatives with DWF4, a cytochrome P450 monooxygenase of the brassinosteroid biosynthetic pathway, correlates with brassinosteroid deficiency in planta. J Biol Chem 2001;276:25687-25691.
    • (2001) J Biol Chem , vol.276 , pp. 25687-25691
    • Asami, T.1    Mizutani, M.2    Fujioka, S.3
  • 28
    • 84863147179 scopus 로고    scopus 로고
    • Biomolecular interactions and tools for their recognition: Focus on the quartz crystal microbalance and its diverse surface chemistries and applications
    • Cheng CI, Chang YP, Chu YH: Biomolecular interactions and tools for their recognition: focus on the quartz crystal microbalance and its diverse surface chemistries and applications. Chem Soc Rev 2012;41:1947-1971.
    • (2012) Chem Soc Rev , vol.41 , pp. 1947-1971
    • Cheng, C.I.1    Chang, Y.P.2    Chu, Y.H.3
  • 29
    • 18044398972 scopus 로고    scopus 로고
    • Self-assembled monolayers of thiolates on metals as a form of nanotechnology
    • Love JC, Estroff LA, Kriebel JK, Nuzzo RG, Whitesides GM: Self-assembled monolayers of thiolates on metals as a form of nanotechnology. Chem Rev 2005;105:1103-1169.
    • (2005) Chem Rev , vol.105 , pp. 1103-1169
    • Love, J.C.1    Estroff, L.A.2    Kriebel, J.K.3    Nuzzo, R.G.4    Whitesides, G.M.5
  • 31
    • 82455167099 scopus 로고    scopus 로고
    • Binding region and interaction properties of sulfoquinovosylacylglycerol (sqag) with human vascular endothelial growth factor 165 revealed by biosensor-based assays
    • Takakusagi Y, Takakusagi K, Ida N, et al.: Binding region and interaction properties of sulfoquinovosylacylglycerol (SQAG) with human vascular endothelial growth factor 165 revealed by biosensor-based assays. MedChemComm 2011;2:1188-1193.
    • (2011) MedChemComm , vol.2 , pp. 1188-1193
    • Takakusagi, Y.1    Takakusagi, K.2    Ida, N.3
  • 32
    • 29144446032 scopus 로고    scopus 로고
    • A nanoparticle amplification based quartz crystal microbalance DNA sensor for detection of Escherichia coli O157:H7
    • Mao X, Yang L, Su XL, Li Y: A nanoparticle amplification based quartz crystal microbalance DNA sensor for detection of Escherichia coli O157:H7. Biosens Bioelectron 2006;21:1178-1185.
    • (2006) Biosens Bioelectron , vol.21 , pp. 1178-1185
    • Mao, X.1    Yang, L.2    Su, X.L.3    Li, Y.4
  • 33
    • 33746260407 scopus 로고    scopus 로고
    • Detection of folate binding protein with enhanced sensitivity using a functionalized quartz crystal microbalance sensor
    • Henne WA, Doorneweerd DD, Lee J, Low PS, Savran C: Detection of folate binding protein with enhanced sensitivity using a functionalized quartz crystal microbalance sensor. Anal Chem 2006;78:4880-4884.
    • (2006) Anal Chem , vol.78 , pp. 4880-4884
    • Henne, W.A.1    Doorneweerd, D.D.2    Lee, J.3    Low, P.S.4    Savran, C.5
  • 34
    • 4143143372 scopus 로고    scopus 로고
    • The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-A resolution
    • Wester MR, Yano JK, Schoch GA, et al.: The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-A resolution. J Biol Chem 2004;279:35630-35637.
    • (2004) J Biol Chem , vol.279 , pp. 35630-35637
    • Wester, M.R.1    Yano, J.K.2    Schoch, G.A.3
  • 36
    • 23144458351 scopus 로고    scopus 로고
    • Suppression of Wolffia arrhiza growth by brassinazole, an inhibitor of brassinosteroid biosynthesis and its restoration by endogenous 24-epibrassinolide
    • Bajguz A, Asami T: Suppression of Wolffia arrhiza growth by brassinazole, an inhibitor of brassinosteroid biosynthesis and its restoration by endogenous 24-epibrassinolide. Phytochemistry 2005;66:1787-1796.
    • (2005) Phytochemistry , vol.66 , pp. 1787-1796
    • Bajguz, A.1    Asami, T.2
  • 37
    • 1542353853 scopus 로고    scopus 로고
    • Effects of brassinazole an inhibitor of brassinosteroid biosynthesis, on light-and dark-grown chlorella vulgaris
    • Bajguz A, Asami T: Effects of brassinazole, an inhibitor of brassinosteroid biosynthesis, on light-and dark-grown Chlorella vulgaris. Planta 2004;218: 869-877.
    • (2004) Planta , vol.218 , pp. 869-877
    • Bajguz, A.1    Asami, T.2
  • 38
    • 80052341212 scopus 로고    scopus 로고
    • Transcription of DWARF4 plays a crucial role in auxin-regulated root elongation in addition to brassinosteroid homeostasis in Arabidopsis thaliana
    • Yoshimitsu Y, Tanaka K, Fukuda W, et al.: Transcription of DWARF4 plays a crucial role in auxin-regulated root elongation in addition to brassinosteroid homeostasis in Arabidopsis thaliana. PLoS One 2011;6:e23851.
    • (2011) PLoS One , vol.6
    • Yoshimitsu, Y.1    Tanaka, K.2    Fukuda, W.3
  • 39
    • 38549105443 scopus 로고    scopus 로고
    • Brz220 interacts with dwf4 a cytochrome p450 monooxygenase in brassinosteroid biosynthesis, and exerts biological activity
    • Sekimata K, Ohnishi T, Mizutani M, et al.: Brz220 interacts with DWF4, a cytochrome P450 monooxygenase in brassinosteroid biosynthesis, and exerts biological activity. Biosci Biotechnol Biochem 2008;72:7-12.
    • (2008) Biosci Biotechnol Biochem , vol.72 , pp. 7-12
    • Sekimata, K.1    Ohnishi, T.2    Mizutani, M.3
  • 40
    • 0034788890 scopus 로고    scopus 로고
    • Brassinazole an inhibitor of brassinosteroid biosynthesis, inhibits development of secondary xylem in cress plants (lepidium sativum)
    • Nagata N, Asami T, Yoshida S: Brassinazole, an inhibitor of brassinosteroid biosynthesis, inhibits development of secondary xylem in cress plants (Lepidium sativum). Plant Cell Physiol 2001;42:1006-1011.
    • (2001) Plant Cell Physiol , vol.42 , pp. 1006-1011
    • Nagata, N.1    Asami, T.2    Yoshida, S.3
  • 41
    • 0033677769 scopus 로고    scopus 로고
    • Treatment of dark-grown Arabidopsis thaliana with a brassinosteroid- biosynthesis inhibitor, brassinazole, induces some characteristics of light-grown plants
    • Nagata N, Min YK, Nakano T, Asami T, Yoshida S: Treatment of dark-grown Arabidopsis thaliana with a brassinosteroid-biosynthesis inhibitor, brassinazole, induces some characteristics of light-grown plants. Planta 2000;211:781-790.
    • (2000) Planta , vol.211 , pp. 781-790
    • Nagata, N.1    Min, Y.K.2    Nakano, T.3    Asami, T.4    Yoshida, S.5


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