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Volumn 9, Issue 3, 2013, Pages

Productive Homologous and Non-homologous Recombination of Hepatitis C Virus in Cell Culture

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 84875984443     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003228     Document Type: Article
Times cited : (44)

References (52)
  • 2
    • 0035936781 scopus 로고    scopus 로고
    • HIV-1 sequence variation: drift, shift, and attenuation
    • Malim MH, Emerman M, (2001) HIV-1 sequence variation: drift, shift, and attenuation. Cell 104: 469-472.
    • (2001) Cell , vol.104 , pp. 469-472
    • Malim, M.H.1    Emerman, M.2
  • 3
    • 34447249033 scopus 로고    scopus 로고
    • Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment
    • Nora T, Charpentier C, Tenaillon O, Hoede C, Clavel F, et al. (2007) Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment. Journal of virology 81: 7620-7628.
    • (2007) Journal of Virology , vol.81 , pp. 7620-7628
    • Nora, T.1    Charpentier, C.2    Tenaillon, O.3    Hoede, C.4    Clavel, F.5
  • 4
    • 0024347652 scopus 로고
    • Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus
    • Khatchikian D, Orlich M, Rott R, (1989) Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus. Nature 340: 156-157.
    • (1989) Nature , vol.340 , pp. 156-157
    • Khatchikian, D.1    Orlich, M.2    Rott, R.3
  • 6
    • 0037066479 scopus 로고    scopus 로고
    • Outbreak of poliomyelitis in Hispaniola associated with circulating type 1 vaccine-derived poliovirus
    • Kew O, Morris-Glasgow V, Landaverde M, Burns C, Shaw J, et al. (2002) Outbreak of poliomyelitis in Hispaniola associated with circulating type 1 vaccine-derived poliovirus. Science 296: 356-359.
    • (2002) Science , vol.296 , pp. 356-359
    • Kew, O.1    Morris-Glasgow, V.2    Landaverde, M.3    Burns, C.4    Shaw, J.5
  • 7
    • 0034979132 scopus 로고    scopus 로고
    • RNA recombination between persisting pestivirus and a vaccine strain: generation of cytopathogenic virus and induction of lethal disease
    • Becher P, Orlich M, Thiel HJ, (2001) RNA recombination between persisting pestivirus and a vaccine strain: generation of cytopathogenic virus and induction of lethal disease. Journal of virology 75: 6256-6264.
    • (2001) Journal of Virology , vol.75 , pp. 6256-6264
    • Becher, P.1    Orlich, M.2    Thiel, H.J.3
  • 8
    • 33750742813 scopus 로고    scopus 로고
    • Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses
    • Simmonds P, (2006) Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses. Journal of virology 80: 11124-11140.
    • (2006) Journal of Virology , vol.80 , pp. 11124-11140
    • Simmonds, P.1
  • 9
    • 45749124737 scopus 로고    scopus 로고
    • Cutting the gordian knot-development and biological relevance of hepatitis C virus cell culture systems
    • Gottwein JM, Bukh J, (2008) Cutting the gordian knot-development and biological relevance of hepatitis C virus cell culture systems. Advances in virus research 71: 51-133.
    • (2008) Advances in Virus Research , vol.71 , pp. 51-133
    • Gottwein, J.M.1    Bukh, J.2
  • 12
    • 25844523297 scopus 로고    scopus 로고
    • Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes
    • Simmonds P, Bukh J, Combet C, Deleage G, Enomoto N, et al. (2005) Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes. Hepatology 42: 962-973.
    • (2005) Hepatology , vol.42 , pp. 962-973
    • Simmonds, P.1    Bukh, J.2    Combet, C.3    Deleage, G.4    Enomoto, N.5
  • 13
    • 0036196640 scopus 로고    scopus 로고
    • A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg
    • Kalinina O, Norder H, Mukomolov S, Magnius LO, (2002) A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg. Journal of virology 76: 4034-4043.
    • (2002) Journal of Virology , vol.76 , pp. 4034-4043
    • Kalinina, O.1    Norder, H.2    Mukomolov, S.3    Magnius, L.O.4
  • 14
    • 69449090752 scopus 로고    scopus 로고
    • Naturally occurring hepatitis C virus subgenomic deletion mutants replicate efficiently in Huh-7 cells and are trans-packaged in vitro to generate infectious defective particles
    • Pacini L, Graziani R, Bartholomew L, De Francesco R, Paonessa G, (2009) Naturally occurring hepatitis C virus subgenomic deletion mutants replicate efficiently in Huh-7 cells and are trans-packaged in vitro to generate infectious defective particles. Journal of virology 83: 9079-9093.
    • (2009) Journal of Virology , vol.83 , pp. 9079-9093
    • Pacini, L.1    Graziani, R.2    Bartholomew, L.3    De Francesco, R.4    Paonessa, G.5
  • 15
    • 25844477058 scopus 로고    scopus 로고
    • Identification of novel HCV subgenome replicating persistently in chronic active hepatitis C patients
    • Yagi S, Mori K, Tanaka E, Matsumoto A, Sunaga F, et al. (2005) Identification of novel HCV subgenome replicating persistently in chronic active hepatitis C patients. Journal of medical virology 77: 399-413.
    • (2005) Journal of Medical Virology , vol.77 , pp. 399-413
    • Yagi, S.1    Mori, K.2    Tanaka, E.3    Matsumoto, A.4    Sunaga, F.5
  • 16
    • 84869214171 scopus 로고    scopus 로고
    • Insertion and recombination events at hypervariable region 1 over 9.6 years of hepatitis C virus chronic infection
    • Palmer BA, Moreau I, Levis J, Harty C, Crosbie O, et al. (2012) Insertion and recombination events at hypervariable region 1 over 9.6 years of hepatitis C virus chronic infection. The Journal of general virology 93: 2614-2624.
    • (2012) The Journal of General Virology , vol.93 , pp. 2614-2624
    • Palmer, B.A.1    Moreau, I.2    Levis, J.3    Harty, C.4    Crosbie, O.5
  • 17
    • 33747797031 scopus 로고    scopus 로고
    • Treating viral hepatitis C: efficacy, side effects, and complications
    • Manns MP, Wedemeyer H, Cornberg M, (2006) Treating viral hepatitis C: efficacy, side effects, and complications. Gut 55: 1350-1359.
    • (2006) Gut , vol.55 , pp. 1350-1359
    • Manns, M.P.1    Wedemeyer, H.2    Cornberg, M.3
  • 19
    • 0026602984 scopus 로고
    • RNA recombination in animal and plant viruses
    • Lai MM, (1992) RNA recombination in animal and plant viruses. Microbiological reviews 56: 61-79.
    • (1992) Microbiological Reviews , vol.56 , pp. 61-79
    • Lai, M.M.1
  • 20
    • 0032853634 scopus 로고    scopus 로고
    • Evolutionary aspects of recombination in RNA viruses
    • Worobey M, Holmes EC, (1999) Evolutionary aspects of recombination in RNA viruses. The Journal of general virology 80(Pt 10): 2535-2543.
    • (1999) The Journal of General Virology , vol.80 , Issue.Pt 10 , pp. 2535-2543
    • Worobey, M.1    Holmes, E.C.2
  • 21
    • 0023017765 scopus 로고
    • The mechanism of RNA recombination in poliovirus
    • Kirkegaard K, Baltimore D, (1986) The mechanism of RNA recombination in poliovirus. Cell 47: 433-443.
    • (1986) Cell , vol.47 , pp. 433-443
    • Kirkegaard, K.1    Baltimore, D.2
  • 23
    • 2642518680 scopus 로고    scopus 로고
    • RNA recombination in vivo in the absence of viral replication
    • Gallei A, Pankraz A, Thiel HJ, Becher P, (2004) RNA recombination in vivo in the absence of viral replication. Journal of virology 78: 6271-6281.
    • (2004) Journal of Virology , vol.78 , pp. 6271-6281
    • Gallei, A.1    Pankraz, A.2    Thiel, H.J.3    Becher, P.4
  • 26
    • 77951437990 scopus 로고    scopus 로고
    • Novel infectious cDNA clones of hepatitis C virus genotype 3a (strain S52) and 4a (strain ED43): genetic analyses and in vivo pathogenesis studies
    • Gottwein JM, Scheel TK, Callendret B, Li YP, Eccleston HB, et al. (2010) Novel infectious cDNA clones of hepatitis C virus genotype 3a (strain S52) and 4a (strain ED43): genetic analyses and in vivo pathogenesis studies. Journal of virology 84: 5277-5293.
    • (2010) Journal of Virology , vol.84 , pp. 5277-5293
    • Gottwein, J.M.1    Scheel, T.K.2    Callendret, B.3    Li, Y.P.4    Eccleston, H.B.5
  • 29
    • 22544470874 scopus 로고    scopus 로고
    • Production of infectious hepatitis C virus in tissue culture from a cloned viral genome
    • Wakita T, Pietschmann T, Kato T, Date T, Miyamoto M, et al. (2005) Production of infectious hepatitis C virus in tissue culture from a cloned viral genome. Nature medicine 11: 791-796.
    • (2005) Nature Medicine , vol.11 , pp. 791-796
    • Wakita, T.1    Pietschmann, T.2    Kato, T.3    Date, T.4    Miyamoto, M.5
  • 30
    • 80052283930 scopus 로고    scopus 로고
    • Development and Application of Hepatitis C Reporter Viruses with Genotype 1 to 7 Core-Nonstructural Protein 2 (NS2) Expressing Fluorescent Proteins or Luciferase in Modified JFH1 NS5A
    • Gottwein JM, Jensen TB, Mathiesen CK, Meuleman P, Serre SB, et al. (2011) Development and Application of Hepatitis C Reporter Viruses with Genotype 1 to 7 Core-Nonstructural Protein 2 (NS2) Expressing Fluorescent Proteins or Luciferase in Modified JFH1 NS5A. Journal of virology 85: 8913-8928.
    • (2011) Journal of Virology , vol.85 , pp. 8913-8928
    • Gottwein, J.M.1    Jensen, T.B.2    Mathiesen, C.K.3    Meuleman, P.4    Serre, S.B.5
  • 31
    • 77954053980 scopus 로고    scopus 로고
    • RNA polymerase activity and specific RNA structure are required for efficient HCV replication in cultured cells
    • Murayama A, Weng L, Date T, Akazawa D, Tian X, et al. (2010) RNA polymerase activity and specific RNA structure are required for efficient HCV replication in cultured cells. PLoS pathogens 6: e1000885.
    • (2010) PLoS Pathogens , vol.6
    • Murayama, A.1    Weng, L.2    Date, T.3    Akazawa, D.4    Tian, X.5
  • 32
    • 61949320778 scopus 로고    scopus 로고
    • Development and characterization of hepatitis C virus genotype 1-7 cell culture systems: role of CD81 and scavenger receptor class B type I and effect of antiviral drugs
    • Gottwein JM, Scheel TK, Jensen TB, Lademann JB, Prentoe JC, et al. (2009) Development and characterization of hepatitis C virus genotype 1-7 cell culture systems: role of CD81 and scavenger receptor class B type I and effect of antiviral drugs. Hepatology 49: 364-377.
    • (2009) Hepatology , vol.49 , pp. 364-377
    • Gottwein, J.M.1    Scheel, T.K.2    Jensen, T.B.3    Lademann, J.B.4    Prentoe, J.C.5
  • 34
    • 79952416361 scopus 로고    scopus 로고
    • Efficient culture adaptation of hepatitis C virus recombinants with genotype-specific core-NS2 by using previously identified mutations
    • Scheel TK, Gottwein JM, Carlsen TH, Li YP, Jensen TB, et al. (2011) Efficient culture adaptation of hepatitis C virus recombinants with genotype-specific core-NS2 by using previously identified mutations. Journal of virology 85: 2891-2906.
    • (2011) Journal of Virology , vol.85 , pp. 2891-2906
    • Scheel, T.K.1    Gottwein, J.M.2    Carlsen, T.H.3    Li, Y.P.4    Jensen, T.B.5
  • 36
    • 0032876683 scopus 로고    scopus 로고
    • Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site
    • Lesburg CA, Cable MB, Ferrari E, Hong Z, Mannarino AF, et al. (1999) Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site. Nature structural biology 6: 937-943.
    • (1999) Nature Structural Biology , vol.6 , pp. 937-943
    • Lesburg, C.A.1    Cable, M.B.2    Ferrari, E.3    Hong, Z.4    Mannarino, A.F.5
  • 37
    • 84864139654 scopus 로고    scopus 로고
    • RNA Structural Elements Determine Frequency and Sites of Nonhomologous Recombination in an Animal Plus-Strand RNA Virus
    • Austermann-Busch S, Becher P, (2012) RNA Structural Elements Determine Frequency and Sites of Nonhomologous Recombination in an Animal Plus-Strand RNA Virus. Journal of virology 86: 7393-402.
    • (2012) Journal of Virology , vol.86 , pp. 7393-7402
    • Austermann-Busch, S.1    Becher, P.2
  • 38
    • 3342985091 scopus 로고    scopus 로고
    • Full-length open reading frame of a recombinant hepatitis C virus strain from St Petersburg: proposed mechanism for its formation
    • Kalinina O, Norder H, Magnius LO, (2004) Full-length open reading frame of a recombinant hepatitis C virus strain from St Petersburg: proposed mechanism for its formation. The Journal of general virology 85: 1853-1857.
    • (2004) The Journal of General Virology , vol.85 , pp. 1853-1857
    • Kalinina, O.1    Norder, H.2    Magnius, L.O.3
  • 39
    • 27644511863 scopus 로고    scopus 로고
    • Noncytopathogenic pestivirus strains generated by nonhomologous RNA recombination: alterations in the NS4A/NS4B coding region
    • Gallei A, Orlich M, Thiel HJ, Becher P, (2005) Noncytopathogenic pestivirus strains generated by nonhomologous RNA recombination: alterations in the NS4A/NS4B coding region. Journal of virology 79: 14261-14270.
    • (2005) Journal of Virology , vol.79 , pp. 14261-14270
    • Gallei, A.1    Orlich, M.2    Thiel, H.J.3    Becher, P.4
  • 41
    • 0020546472 scopus 로고
    • RNAs from two independently isolated defective interfering particles of Sindbis virus contain a cellular tRNA sequence at their 5′ ends
    • Monroe SS, Schlesinger S, (1983) RNAs from two independently isolated defective interfering particles of Sindbis virus contain a cellular tRNA sequence at their 5′ ends. Proceedings of the National Academy of Sciences of the United States of America 80: 3279-3283.
    • (1983) Proceedings of the National Academy of Sciences of the United States of America , vol.80 , pp. 3279-3283
    • Monroe, S.S.1    Schlesinger, S.2
  • 42
    • 0023924074 scopus 로고
    • An in vivo recombinant RNA capable of autocatalytic synthesis by Q beta replicase
    • Munishkin AV, Voronin LA, Chetverin AB, (1988) An in vivo recombinant RNA capable of autocatalytic synthesis by Q beta replicase. Nature 333: 473-475.
    • (1988) Nature , vol.333 , pp. 473-475
    • Munishkin, A.V.1    Voronin, L.A.2    Chetverin, A.B.3
  • 43
    • 79954465599 scopus 로고    scopus 로고
    • RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease
    • Becher P, Tautz N, (2011) RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease. RNA biology 8: 216-224.
    • (2011) RNA Biology , vol.8 , pp. 216-224
    • Becher, P.1    Tautz, N.2
  • 44
    • 58449125226 scopus 로고    scopus 로고
    • Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration
    • Geuking MB, Weber J, Dewannieux M, Gorelik E, Heidmann T, et al. (2009) Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration. Science 323: 393-396.
    • (2009) Science , vol.323 , pp. 393-396
    • Geuking, M.B.1    Weber, J.2    Dewannieux, M.3    Gorelik, E.4    Heidmann, T.5
  • 45
    • 34247631514 scopus 로고    scopus 로고
    • Analysis of hepatitis C virus superinfection exclusion by using novel fluorochrome gene-tagged viral genomes
    • Schaller T, Appel N, Koutsoudakis G, Kallis S, Lohmann V, et al. (2007) Analysis of hepatitis C virus superinfection exclusion by using novel fluorochrome gene-tagged viral genomes. Journal of virology 81: 4591-4603.
    • (2007) Journal of Virology , vol.81 , pp. 4591-4603
    • Schaller, T.1    Appel, N.2    Koutsoudakis, G.3    Kallis, S.4    Lohmann, V.5
  • 47
    • 0033568548 scopus 로고    scopus 로고
    • Hepatitis C virus: an infectious molecular clone of a second major genotype (2a) and lack of viability of intertypic 1a and 2a chimeras
    • Yanagi M, Purcell RH, Emerson SU, Bukh J, (1999) Hepatitis C virus: an infectious molecular clone of a second major genotype (2a) and lack of viability of intertypic 1a and 2a chimeras. Virology 262: 250-263.
    • (1999) Virology , vol.262 , pp. 250-263
    • Yanagi, M.1    Purcell, R.H.2    Emerson, S.U.3    Bukh, J.4
  • 49
    • 34250865507 scopus 로고    scopus 로고
    • In vivo study of the HC-TN strain of hepatitis C virus recovered from a patient with fulminant hepatitis: RNA transcripts of a molecular clone (pHC-TN) are infectious in chimpanzees but not in Huh7.5 cells
    • Sakai A, Takikawa S, Thimme R, Meunier JC, Spangenberg HC, et al. (2007) In vivo study of the HC-TN strain of hepatitis C virus recovered from a patient with fulminant hepatitis: RNA transcripts of a molecular clone (pHC-TN) are infectious in chimpanzees but not in Huh7.5 cells. Journal of virology 81: 7208-7219.
    • (2007) Journal of Virology , vol.81 , pp. 7208-7219
    • Sakai, A.1    Takikawa, S.2    Thimme, R.3    Meunier, J.C.4    Spangenberg, H.C.5
  • 50
    • 17544390782 scopus 로고    scopus 로고
    • Transcripts of a chimeric cDNA clone of hepatitis C virus genotype 1b are infectious in vivo
    • Yanagi M, St. Claire M, Shapiro M, Emerson SU, Purcell RH, et al. (1998) Transcripts of a chimeric cDNA clone of hepatitis C virus genotype 1b are infectious in vivo. Virology 244: 161-172.
    • (1998) Virology , vol.244 , pp. 161-172
    • Yanagi, M.1    St. Claire, M.2    Shapiro, M.3    Emerson, S.U.4    Purcell, R.H.5
  • 51
    • 35648963197 scopus 로고    scopus 로고
    • Robust hepatitis C genotype 3a cell culture releasing adapted intergenotypic 3a/2a (S52/JFH1) viruses
    • Gottwein JM, Scheel TK, Hoegh AM, Lademann JB, Eugen-Olsen J, et al. (2007) Robust hepatitis C genotype 3a cell culture releasing adapted intergenotypic 3a/2a (S52/JFH1) viruses. Gastroenterology 133: 1614-1626.
    • (2007) Gastroenterology , vol.133 , pp. 1614-1626
    • Gottwein, J.M.1    Scheel, T.K.2    Hoegh, A.M.3    Lademann, J.B.4    Eugen-Olsen, J.5
  • 52
    • 79952296871 scopus 로고    scopus 로고
    • Recombinant HCV variants with NS5A from genotypes 1-7 have different sensitivities to an NS5A inhibitor but not interferon-alpha
    • Scheel TK, Gottwein JM, Mikkelsen LS, Jensen TB, Bukh J, (2011) Recombinant HCV variants with NS5A from genotypes 1-7 have different sensitivities to an NS5A inhibitor but not interferon-alpha. Gastroenterology 140: 1032-1042.
    • (2011) Gastroenterology , vol.140 , pp. 1032-1042
    • Scheel, T.K.1    Gottwein, J.M.2    Mikkelsen, L.S.3    Jensen, T.B.4    Bukh, J.5


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