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Volumn 24, Issue 3, 2013, Pages 431-443

Probing the complementarity of FAIMS and strong cation exchange chromatography in shotgun proteomics

Author keywords

Collision induced dissociation; Differential ion mobility; Electron transfer dissociation; FAIMS; High field asymmetric waveform ion mobility spectrometry; Liquid chromatography; Proteomics; Strong cation exchange

Indexed keywords

COLLISION INDUCED DISSOCIATION; ELECTRON TRANSFER DISSOCIATION; FAIMS; HIGH-FIELD ASYMMETRIC WAVEFORM ION MOBILITY SPECTROMETRIES; ION MOBILITY; PROTEOMICS; STRONG CATION EXCHANGES;

EID: 84875894907     PISSN: 10440305     EISSN: 18791123     Source Type: Journal    
DOI: 10.1007/s13361-012-0544-2     Document Type: Article
Times cited : (28)

References (26)
  • 1
    • 79953719716 scopus 로고    scopus 로고
    • More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
    • 10.1021/pr101060v 1:CAS:528:DC%2BC3MXisVyksLw%3D
    • Michalski, A.; Cox, J.; Mann, M.: More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J. Proteome Res. 10, 1785-1793 (2011)
    • (2011) J. Proteome Res. , vol.10 , pp. 1785-1793
    • Michalski, A.1    Cox, J.2    Mann, M.3
  • 2
    • 79961212595 scopus 로고    scopus 로고
    • Improvements in proteomic metrics of low abundance proteins through proteome equalization using proteominer prior to MudPIT
    • 10.1021/pr200304u 1:CAS:528:DC%2BC3MXnvFahtLk%3D
    • Fonslow, B.R.; Carvalho, P.C.; Academia, K.; Freeby, S.; Xu, T.; Nakorchevsky, A.; Paulus, A.; Yates, J.R.: Improvements in proteomic metrics of low abundance proteins through proteome equalization using proteominer prior to MudPIT. J. Proteome Res. 10, 3690-3700 (2011)
    • (2011) J. Proteome Res. , vol.10 , pp. 3690-3700
    • Fonslow, B.R.1    Carvalho, P.C.2    Academia, K.3    Freeby, S.4    Xu, T.5    Nakorchevsky, A.6    Paulus, A.7    Yates, J.R.8
  • 3
    • 33845902530 scopus 로고    scopus 로고
    • Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics
    • 10.1586/14789450.3.6.611
    • Han, D.K.; Wu, L.F.: Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics. Expert Rev. Proteom. 3, 611-619 (2006)
    • (2006) Expert Rev. Proteom. , vol.3 , pp. 611-619
    • Han, D.K.1    Wu, L.F.2
  • 4
    • 55249096894 scopus 로고    scopus 로고
    • Comprehensive mass spectrometry-based proteome quantification of haploid versus diploid yeast
    • 10.1038/nature07341
    • de Godoy, L.M.; Olse, J.V.; Cox, J.; Nielsen, M.L.; Hubner, N.C.; Frohlich, F.; Walther, T.C.; Mann, M.: Comprehensive mass spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 455, 1251-1254 (2008)
    • (2008) Nature , vol.455 , pp. 1251-1254
    • De Godoy, L.M.1    Olse, J.V.2    Cox, J.3    Nielsen, M.L.4    Hubner, N.C.5    Frohlich, F.6    Walther, T.C.7    Mann, M.8
  • 6
    • 67449091573 scopus 로고    scopus 로고
    • Large-scale localization of protein phopshorylation by electron capture dissociation mass spectrometry
    • 10.1074/mcp.M800451-MCP200 1:CAS:528:DC%2BD1MXmtlGqtL8%3D
    • Sweet, S.M.M.; Bailey, C.M.; Cunningham, D.L.; Heath, J.K.; Cooper, H.J.: Large-scale localization of protein phopshorylation by electron capture dissociation mass spectrometry. Mol. Cell. Proteom. 8, 904-912 (2009)
    • (2009) Mol. Cell. Proteom. , vol.8 , pp. 904-912
    • Sweet, S.M.M.1    Bailey, C.M.2    Cunningham, D.L.3    Heath, J.K.4    Cooper, H.J.5
  • 7
    • 8444223860 scopus 로고    scopus 로고
    • High-field asymmetric waveform ion mobility spectrometry: A new tool for mass spectrometry
    • 1:CAS:528:DC%2BD2cXpslGiu78%3D
    • Guevremont, R.: High-field asymmetric waveform ion mobility spectrometry: a new tool for mass spectrometry. J. Chromatogr. A 1058, 3-19 (2004)
    • (2004) J. Chromatogr. A , vol.1058 , pp. 3-19
    • Guevremont, R.1
  • 8
    • 0032324858 scopus 로고    scopus 로고
    • Mass spectrometric chracterization of a high-field asymmetric waveform ion mobility spectrometer
    • Purves, R.W.; Guevremont,R.; Day, S.; Pipich, C.W.; Matyjaszczyk, M.: Mass spectrometric chracterization of a high-field asymmetric waveform ion mobility spectrometer. Rev. Sci. Instrum. 69, 4094-4105 (1998)
    • (1998) Rev. Sci. Instrum. , vol.69 , pp. 4094-4105
    • Purves, R.W.1    Guevremont, R.2    Day, S.3    Pipich, C.W.4    Matyjaszczyk, M.5
  • 9
    • 0036831034 scopus 로고    scopus 로고
    • Application of ESI-FAIMS-MS to the analysis of tryptic peptides
    • 10.1016/S1044-0305(02)00527-5 1:CAS:528:DC%2BD38XosVKgtr8%3D
    • Barnett, D.A.; Ells, B.; Guevremont, R.; Purves, R.W.: Application of ESI-FAIMS-MS to the analysis of tryptic peptides. J. Am. Soc. Mass Spectrom. 13, 1282-1291 (2002)
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , pp. 1282-1291
    • Barnett, D.A.1    Ells, B.2    Guevremont, R.3    Purves, R.W.4
  • 10
    • 0034307599 scopus 로고    scopus 로고
    • Analysis of a tryptic digest of pig hemaglobin using ESI-FAIMS-MS
    • 10.1021/ac0000271 1:CAS:528:DC%2BD3cXmtVaju7Y%3D
    • Guevremont, R.; Barnett, D.A.; Purves, R.W.; Vandermey, J.: Analysis of a tryptic digest of pig hemaglobin using ESI-FAIMS-MS. Anal. Chem. 72, 4577-4584 (2000)
    • (2000) Anal. Chem. , vol.72 , pp. 4577-4584
    • Guevremont, R.1    Barnett, D.A.2    Purves, R.W.3    Vandermey, J.4
  • 11
    • 16244366808 scopus 로고    scopus 로고
    • Improvement in peptide detection for proteomics analyses using nanoLC-MS and high-field asymmetry waveform ion mobility mass spectrometry
    • 10.1021/ac048410j 1:CAS:528:DC%2BD2MXitVShsr8%3D
    • Venne, K.; Bonneil, E.; Eng, K.; Thibault, P.: Improvement in peptide detection for proteomics analyses using nanoLC-MS and high-field asymmetry waveform ion mobility mass spectrometry. Anal. Chem. 77, 2176-2186 (2005)
    • (2005) Anal. Chem. , vol.77 , pp. 2176-2186
    • Venne, K.1    Bonneil, E.2    Eng, K.3    Thibault, P.4
  • 12
    • 51949104348 scopus 로고    scopus 로고
    • LC-FAIMS-MS/MS for quantification of a peptide in plasma and evaluation of FAIMS global selectivity from plasma components
    • 10.1021/ac8010846 1:CAS:528:DC%2BD1cXovFSrsrg%3D
    • Xia, Y.-Q.; Wu, S.T.; Jemal, M.: LC-FAIMS-MS/MS for quantification of a peptide in plasma and evaluation of FAIMS global selectivity from plasma components. Anal. Chem. 80, 7137-7143 (2008)
    • (2008) Anal. Chem. , vol.80 , pp. 7137-7143
    • Xia, Y.-Q.1    Wu, S.T.2    Jemal, M.3
  • 13
    • 67650360325 scopus 로고    scopus 로고
    • Separation of isobaric phosphopeptides by high field asymmetric waveform ion mobility spectrometry confirmed by high resolution electron transfer dissociation mass spectrometry
    • 10.1002/rcm.4101 1:CAS:528:DC%2BD1MXntFaqt7k%3D
    • Xuan, Y.; Creese, A.J.; Horner, J.A.; Cooper, H.J.: Separation of isobaric phosphopeptides by high field asymmetric waveform ion mobility spectrometry confirmed by high resolution electron transfer dissociation mass spectrometry. Rapid Commun. Mass Spectrom. 23, 1963-1969 (2009)
    • (2009) Rapid Commun. Mass Spectrom. , vol.23 , pp. 1963-1969
    • Xuan, Y.1    Creese, A.J.2    Horner, J.A.3    Cooper, H.J.4
  • 14
    • 77957292542 scopus 로고    scopus 로고
    • Complete separation of peptide isomers with variant modified sites by high-resolution differential ion mobility spectrometry
    • 10.1021/ac101878a 1:CAS:528:DC%2BC3cXhtFGru7vK
    • Shvartsburg, A.A.; Creese, A.J.; Smith, R.D.; Cooper, H.J.: Complete separation of peptide isomers with variant modified sites by high-resolution differential ion mobility spectrometry. Anal. Chem. 82, 8327-8334 (2010)
    • (2010) Anal. Chem. , vol.82 , pp. 8327-8334
    • Shvartsburg, A.A.1    Creese, A.J.2    Smith, R.D.3    Cooper, H.J.4
  • 15
    • 80052785489 scopus 로고    scopus 로고
    • Separation of a set of peptide sequence isomers using differential ion mobility spectrometry
    • 10.1021/ac201640d 1:CAS:528:DC%2BC3MXhtVylsrfN
    • Shvartsburg, A.A.; Creese, A.J.; Smith, R.D.; Cooper, H.J.: Separation of a set of peptide sequence isomers using differential ion mobility spectrometry. Anal. Chem. 83, 6918-6923 (2011)
    • (2011) Anal. Chem. , vol.83 , pp. 6918-6923
    • Shvartsburg, A.A.1    Creese, A.J.2    Smith, R.D.3    Cooper, H.J.4
  • 16
    • 84857872572 scopus 로고    scopus 로고
    • The separation and identification of isomeric glycopeptides by high field symmetric waveform ion mobility spectrometry
    • 10.1021/ac203321y 1:CAS:528:DC%2BC38XhsVWju7c%3D
    • Creese, A.J.; Cooper, H.J.: The separation and identification of isomeric glycopeptides by high field symmetric waveform ion mobility spectrometry. Anal. Chem. 84, 2597-2601 (2012)
    • (2012) Anal. Chem. , vol.84 , pp. 2597-2601
    • Creese, A.J.1    Cooper, H.J.2
  • 17
    • 67650364357 scopus 로고    scopus 로고
    • Enhanced sensitivity in proteomics experiments using FAIMS coupled with a hybrid linear ion trap/orbitrap mass spectrometer
    • 10.1021/pr801106a 1:CAS:528:DC%2BD1MXmvFOiu7g%3D
    • Saba, J.; Bonneil, E.; Pomies, C.; Eng, K.; Thibault, P.: Enhanced sensitivity in proteomics experiments using FAIMS coupled with a hybrid linear ion trap/orbitrap mass spectrometer. J. Proteome Res. 8, 3355-3366 (2009)
    • (2009) J. Proteome Res. , vol.8 , pp. 3355-3366
    • Saba, J.1    Bonneil, E.2    Pomies, C.3    Eng, K.4    Thibault, P.5
  • 18
    • 84856675258 scopus 로고    scopus 로고
    • Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. Application to the Insulin Signaling Pathway in Drosophila melanogaster S2 cells
    • 10.1021/pr200722s 1:CAS:528:DC%2BC3MXhsVaisLjM
    • Bridon, G.; Bonneil, E.; Muratore-Schroeder, T.; Caron-Lizotte, O.; Thibault, P.: Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. Application to the Insulin Signaling Pathway in Drosophila melanogaster S2 cells. J. Proteome Res. 11, 927-940 (2012)
    • (2012) J. Proteome Res , vol.11 , pp. 927-940
    • Bridon, G.1    Bonneil, E.2    Muratore-Schroeder, T.3    Caron-Lizotte, O.4    Thibault, P.5
  • 19
    • 84859840487 scopus 로고    scopus 로고
    • Nanospray FAIMS fractionation provides significant increases in proteome coverage of unfractionated complex protein digests
    • Swearingen, K.E.; Hoopmann, M.R.; Johnson, R.S.; Saleem, R.A.; Aitchison, J.D.; Moritz, R.L.: Nanospray FAIMS fractionation provides significant increases in proteome coverage of unfractionated complex protein digests. Mol. Cell. Proteom. 11, M111.014985 (2012)
    • (2012) Mol. Cell. Proteom. , vol.11
    • Swearingen, K.E.1    Hoopmann, M.R.2    Johnson, R.S.3    Saleem, R.A.4    Aitchison, J.D.5    Moritz, R.L.6
  • 20
    • 78650147228 scopus 로고    scopus 로고
    • The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: Applications to database search
    • 10.1074/mcp.M110.003731 1:CAS:528:DC%2BC3MXhs12qug%3D%3D
    • Kim, S.; Mischerikow, N.; Bandeira, N.; Navarro, J.D.; Wich, L.; Mohammed, S.; Heck, A.J.R.; Pevzner, P.A.: The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search. Mol. Cell. Proteom. 9, 2840-2852 (2010)
    • (2010) Mol. Cell. Proteom. , vol.9 , pp. 2840-2852
    • Kim, S.1    Mischerikow, N.2    Bandeira, N.3    Navarro, J.D.4    Wich, L.5    Mohammed, S.6    Heck, A.J.R.7    Pevzner, P.A.8
  • 21
    • 71549129513 scopus 로고    scopus 로고
    • Database Search strategies for proteomic data sets generated by electron capture dissociation mass spectrometry
    • 10.1021/pr9008282 1:CAS:528:DC%2BD1MXhtlWlsr%2FL
    • Sweet, S.M.M.; Jones, A.W.; Cunningham, D.L.; Heath, J.K.; Creese, A.J.; Cooper, H.J.: Database Search strategies for proteomic data sets generated by electron capture dissociation mass spectrometry. J. Proteome Res. 8, 5475-5484 (2009)
    • (2009) J. Proteome Res. , vol.8 , pp. 5475-5484
    • Sweet, S.M.M.1    Jones, A.W.2    Cunningham, D.L.3    Heath, J.K.4    Creese, A.J.5    Cooper, H.J.6
  • 22
    • 46849098407 scopus 로고    scopus 로고
    • Comprehensive comparison of collision induced dissociation and electron transfer dissociation
    • 10.1021/ac8007785 1:CAS:528:DC%2BD1cXmvFCiu74%3D
    • Molina, H.; Matthiesen, R.; Kandasamy, K.; Pandey, A.: Comprehensive comparison of collision induced dissociation and electron transfer dissociation. Anal. Chem. 80, 4825-4835 (2008)
    • (2008) Anal. Chem. , vol.80 , pp. 4825-4835
    • Molina, H.1    Matthiesen, R.2    Kandasamy, K.3    Pandey, A.4
  • 23
    • 36749068401 scopus 로고    scopus 로고
    • Performance characteristics of electron transfer dissociation mass spectrometry
    • 10.1074/mcp.M700073-MCP200 1:CAS:528:DC%2BD2sXhsVeisbvP
    • Good, D.M.; Wirtala, M.; McAlister, G.C.; Coon, J.J.: Performance characteristics of electron transfer dissociation mass spectrometry. Mol. Cell. Proteom. 6, 1942-1951 (2007)
    • (2007) Mol. Cell. Proteom. , vol.6 , pp. 1942-1951
    • Good, D.M.1    Wirtala, M.2    McAlister, G.C.3    Coon, J.J.4
  • 24
    • 80052485658 scopus 로고    scopus 로고
    • Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic- peptidomic analysis: Comparison of peptide identification methods
    • 10.1021/pr200052c 1:CAS:528:DC%2BC3MXhtVWhtbnO
    • Shen, Y.F.; Tolic, N.; Xie, F.; Zhao, R.; Purvine, S.O.; Schepmoes, A.A.; Ronald, J.M.; Anderson, G.A.; Smith, R.D.: Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods. J. Proteome Res. 10, 3929-3943 (2011)
    • (2011) J. Proteome Res. , vol.10 , pp. 3929-3943
    • Shen, Y.F.1    Tolic, N.2    Xie, F.3    Zhao, R.4    Purvine, S.O.5    Schepmoes, A.A.6    Ronald, J.M.7    Anderson, G.A.8    Smith, R.D.9
  • 25
    • 33846269339 scopus 로고    scopus 로고
    • Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
    • Swaney, D.L.; McAlister, G.C.; Wirtala, M.; Schwartz, J.C.; Syka, J.E.P.; Coon, J.J.: Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Anal. Chem. 79, 477-485 (2007)
    • (2007) Anal. Chem. , vol.79 , pp. 477-485
    • Swaney, D.L.1    McAlister, G.C.2    Wirtala, M.3    Schwartz, J.C.4    Syka, E.J.P.5    Coon, J.J.6


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