-
1
-
-
79251539239
-
Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermal hot springs
-
Aguilera, A., Souza-Egipsy, V., Gonzalez-Toril, E., Rendueles, O., and Amils, R. (2010). Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermal hot springs. Int. Microbiol. 13, 21-32.
-
(2010)
Int. Microbiol.
, vol.13
, pp. 21-32
-
-
Aguilera, A.1
Souza-Egipsy, V.2
Gonzalez-Toril, E.3
Rendueles, O.4
Amils, R.5
-
2
-
-
34848920846
-
Distribution and seasonal variability in the benthic eukaryotic community of Rio Tinto (SW, Spain), an acidic, high metal extreme envi-ronment
-
Aguilera, A., Zettler, E., Gomez, F., Amaral-Zettler, L., Rodriguez, N., and Amils, R. (2007). Distribution and seasonal variability in the benthic eukaryotic community of Rio Tinto (SW, Spain), an acidic, high metal extreme envi-ronment. Syst.Appl.Microbiol.30, 531-546.
-
(2007)
Syst.Appl.Microbiol
, vol.30
, pp. 531-546
-
-
Aguilera, A.1
Zettler, E.2
Gomez, F.3
Amaral-Zettler, L.4
Rodriguez, N.5
Amils, R.6
-
3
-
-
15444343076
-
Insights on the diversity within a "species" of Thalassicolla (Spumellarida) based on 16S-like ribosomal RNA gene sequencing
-
Amaral Zettler, L. A., Anderson, O. R., and Caron, D. A. (1998). Insights on the diversity within a "species" of Thalassicolla (Spumellarida) based on 16S-like ribosomal RNA gene sequencing. J. Eukaryot. Microbiol. 45, 488-496.
-
(1998)
J. Eukaryot. Microbiol.
, vol.45
, pp. 488-496
-
-
Amaral Zettler, L.A.1
Anderson, O.R.2
Caron, D.A.3
-
4
-
-
0012544141
-
Microbiology: eukaryotic diversity in Spain's River of Fire
-
Amaral Zettler, L. A., Gomez, F., Zettler, E., Keenan, B. G., Amils, R., and Sogin, M. L. (2002). Microbiology: eukaryotic diversity in Spain's River of Fire. Nature 417, 137.
-
(2002)
Nature
, vol.417
, pp. 137
-
-
Amaral Zettler, L.A.1
Gomez, F.2
Zettler, E.3
Keenan, B.G.4
Amils, R.5
Sogin, M.L.6
-
5
-
-
68149178616
-
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
-
doi:10.1371/journal.pone.0006372
-
Amaral-Zettler, L. A., McCliment, E. A., Ducklow, H. W., and Huse, S. M. (2009). A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS ONE 4:e6372. doi: 10.1371/journal.pone.0006372
-
(2009)
PLoS ONE
, vol.4
-
-
Amaral-Zettler, L.A.1
McCliment, E.A.2
Ducklow, H.W.3
Huse, S.M.4
-
6
-
-
78650617907
-
Microbial community structure across the tree of life in the extreme Rio Tinto
-
Amaral-Zettler, L. A., Zettler, E. R.,Theroux,S.M.,Palacios,C., Aguilera, A., and Amils, R. (2011). Microbial community structure across the tree of life in the extreme Rio Tinto. ISME J. 5, 42-50.
-
(2011)
ISME J
, vol.5
, pp. 42-50
-
-
Amaral-Zettler, L.A.1
Zettler, E.R.2
Theroux, S.M.3
Palacios, C.4
Aguilera, A.5
Amils, R.6
-
7
-
-
0141592793
-
Extremely acidophilic pro-tists from acid mine drainage host Rickettsiales-lineage endosym-bionts that have intervening sequences in their 16S rRNA genes
-
Baker, B. J., Hugenholtz, P., Dawson, S. C., and Banfield, J. F. (2003). Extremely acidophilic pro-tists from acid mine drainage host Rickettsiales-lineage endosym-bionts that have intervening sequences in their 16S rRNA genes. Appl.Environ.Microbiol.69, 5512-5518.
-
(2003)
Appl.Environ.Microbiol
, vol.69
, pp. 5512-5518
-
-
Baker, B.J.1
Hugenholtz, P.2
Dawson, S.C.3
Banfield, J.F.4
-
8
-
-
64249116321
-
Tetramitus thermacidophilus n. sp., an amoeboflagellate from acidic hot springs
-
Baumgartner, M., Eberhardt, S., De Jonckheere, J. F., and Stetter, K. O. (2009). Tetramitus thermacidophilus n. sp., an amoeboflagellate from acidic hot springs. J. Eukaryot. Microbiol. 56, 201-206.
-
(2009)
J. Eukaryot. Microbiol.
, vol.56
, pp. 201-206
-
-
Baumgartner, M.1
Eberhardt, S.2
De Jonckheere, J.F.3
Stetter, K.O.4
-
9
-
-
84890680857
-
Alkaline envi-ronments
-
ed E. M. Bell (Cambridge, MA: CAB International)
-
Bell, E. M. (2012). "Alkaline envi-ronments," in Life at Extremes: Environments, Organisms and Strategies for Survival, ed E. M. Bell (Cambridge, MA: CAB International), 554.
-
(2012)
Life at Extremes: Environments, Organisms and Strategies for Surviva
, pp. 554
-
-
Bell, E.M.1
-
10
-
-
84855999385
-
Primordial soup or vinaigrette: did the RNA world evolveat acidic pH? Biol
-
doi:10.1186/1745-6150-7-4
-
Bernhardt, H. S., and Tate, W. P. (2012). Primordial soup or vinaigrette: did the RNA world evolve atacidic pH? Biol. Direct 7:4. doi: 10.1186/1745-6150-7-4
-
(2012)
Direct
, vol.7
, pp. 4
-
-
Bernhardt, H.S.1
Tate, W.P.2
-
11
-
-
0001456071
-
Rotifer occurrence in rela-tion to pH
-
Berzins, B., and Pejler, B. (1987). Rotifer occurrence in rela-tion to pH. Hydrobiologia 147, 107-116.
-
(1987)
Hydrobiologia
, vol.147
, pp. 107-116
-
-
Berzins, B.1
Pejler, B.2
-
12
-
-
77956710807
-
Eukaryote-dominated biofilms and their significance in acidic environments
-
Brake, S. S., and Hasiotis, S. T. (2010). Eukaryote-dominated biofilms and their significance in acidic environments. Geomicrobiol. J. 27, 534-558.
-
(2010)
Geomicrobiol. J.
, vol.27
, pp. 534-558
-
-
Brake, S.S.1
Hasiotis, S.T.2
-
13
-
-
76549087358
-
Archaea and bacteria with surpris-ing microdiversity show shifts in dominance over 1000-year time scales in hydrothermal chimneys
-
Brazelton, W. J., Ludwig, K. A., Sogin, M. L., Andreishcheva, E. N., Kelley, D. S., Shen, C. C., et al. (2010). Archaea and bacteria with surpris-ing microdiversity show shifts in dominance over 1, 000-year time scales in hydrothermal chimneys. Proc. Natl. Acad. Sci. U.S.A. 107, 1612-1617.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 1612-1617
-
-
Brazelton, W.J.1
Ludwig, K.A.2
Sogin, M.L.3
Andreishcheva, E.N.4
Kelley, D.S.5
Shen, C.C.6
-
15
-
-
33751357074
-
Protist genetic diversity in the acidic hydrothermal environments of Lassen Volcanic National Park
-
Brown, P. B., and Wolfe, G. V. (2006). Protist genetic diversity in the acidic hydrothermal environments of Lassen Volcanic National Park, USA. J. Eukaryot. Microbiol. 53, 420-431.
-
(2006)
USA. J. Eukaryot. Microbiol.
, vol.53
, pp. 420-431
-
-
Brown, P.B.1
Wolfe, G.V.2
-
16
-
-
37549046755
-
Pinnularia obscura Krasske (Bacillariophyceae Bacillariophyta) from acidic envi-ronments: characterization and comparison with other acid-tolerant Pinnularia species
-
Ciniglia, C., Cennamo, P., De Stefano, M., Pinto, G., Caputo, P., and Pollio, A. (2007). Pinnularia obscura Krasske (Bacillariophyceae, Bacillariophyta) from acidic envi-ronments: characterization and comparison with other acid-tolerant Pinnularia species. Fund. Appl. Limnol. 170, 29-47.
-
(2007)
Fund. Appl. Limnol.
, vol.170
, pp. 29-47
-
-
Ciniglia, C.1
Cennamo, P.2
De Stefano, M.3
Pinto, G.4
Caputo, P.5
Pollio, A.6
-
18
-
-
34250881505
-
How eukaryotic algae can adapt to the Spain's Rio Tinto: a neo-Darwinian proposal for rapid adaptation to an extremely hostile ecosystem
-
Costas, E., Flores-Moya, A., Perdigones, N., Maneiro, E., Blanco, J. L., Garcia, M. E., et al. (2007). How eukaryotic algae can adapt to the Spain's Rio Tinto: a neo-Darwinian proposal for rapid adaptation to an extremely hostile ecosystem. New Phytol. 175, 334-339.
-
(2007)
New Phytol
, vol.175
, pp. 334-339
-
-
Costas, E.1
Flores-Moya, A.2
Perdigones, N.3
Maneiro, E.4
Blanco, J.L.5
Garcia, M.E.6
-
19
-
-
0033794512
-
Review of rotifers and crustaceans in highly acidic environments
-
Deneke, R. (2000). Review of rotifers and crustaceans in highly acidic environments. Hydrobiologia 433, 167-172.
-
(2000)
Hydrobiologia
, vol.433
, pp. 167-172
-
-
Deneke, R.1
-
20
-
-
0033785424
-
A review of diatoms found in highly acidic environments
-
Denicola, D. M. (2000). A review of diatoms found in highly acidic environments. Hydrobiologia 433, 111-122.
-
(2000)
Hydrobiologia
, vol.433
, pp. 111-122
-
-
Denicola, D.M.1
-
21
-
-
0031284508
-
Species assemblages and indicator species: the need for a flexible asymmetrical approach
-
Dufrêne, M., and Legendre, P. (1997). Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67, 345-366.
-
(1997)
Ecol. Monogr.
, vol.67
, pp. 345-366
-
-
Dufrêne, M.1
Legendre, P.2
-
22
-
-
13244255415
-
MUSCLE: a mul-tiple sequence alignment method withreducedtimeandspacecom-plexity
-
doi:10.1186/1471-2105-5-113
-
Edgar, R. C. (2004). MUSCLE: a mul-tiple sequence alignment method withreducedtimeandspacecom-plexity. BMC Bioinformatics 5:113. doi: 10.1186/1471-2105-5-113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
23
-
-
0001977726
-
Ecological studies of the sessile Rotatoria. Part I. Factors affecting distribu-tion
-
Edmondson, W. T. (1944). Ecological studies of the sessile Rotatoria. Part, I. Factors affecting distribu-tion. Ecol. Monogr. 14, 31-66.
-
(1944)
Ecol. Monogr.
, vol.14
, pp. 31-66
-
-
Edmondson, W.T.1
-
24
-
-
80055041479
-
Exploring the diversity of Gardnerella vagi-nalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation
-
doi:10.1371/ journal.pone.0026732
-
Eren,A.M.,Zozaya,M.,Taylor,C. M., Dowd, S. E., Martin, D. H., and Ferris, M. J. (2011). Exploring the diversity of Gardnerella vagi-nalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation. PLoS ONE 6:e26732. doi: 10.1371/ journal.pone.0026732
-
(2011)
PLoS ONE
, vol.6
-
-
Eren, A.M.1
Zozaya, M.2
Taylor, C.M.3
Dowd, S.E.4
Martin, D.H.5
Ferris, M.J.6
-
25
-
-
32044474184
-
Algal species and light microenvironment in a low-pH, geothermal microbial mat commu-nity
-
Ferris,M.J.,Sheehan,K.B.,Kuhl, M., Cooksey, K., Wigglesworth-Cooksey, B., Harvey, R., et al. (2005). Algal species and light microenvironment in a low-pH, geothermal microbial mat commu-nity. Appl.Environ.Microbiol.71, 7164-7171.
-
(2005)
Appl.Environ.Microbiol
, vol.71
, pp. 7164-7171
-
-
Ferris, M.J.1
Sheehan, K.B.2
Kuhl, M.3
Cooksey, K.4
Wigglesworth-Cooksey, B.5
Harvey, R.6
-
26
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
Fierer, N., and Jackson, R. B. (2006). The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U.S.A. 103, 626-631.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
28
-
-
0000600013
-
Diversity and structure in aquatic ecosystems
-
Frontier, S. (1985). Diversity and structure in aquatic ecosystems. Oceanogr. Mar. Biol. 23, 253-312.
-
(1985)
Oceanogr. Mar. Biol.
, vol.23
, pp. 253-312
-
-
Frontier, S.1
-
29
-
-
33845437565
-
Yeast diversity in the extreme acidic environments of the Iberian Pyrite Belt
-
Gadanho, M., Libkind, D., and Sampaio, J. P. (2006). Yeast diversity in the extreme acidic environments of the Iberian Pyrite Belt. Microb. Ecol. 52, 552-563.
-
(2006)
Microb. Ecol.
, vol.52
, pp. 552-563
-
-
Gadanho, M.1
Libkind, D.2
Sampaio, J.P.3
-
30
-
-
0033790125
-
Acidophilic and acid-tolerant fungi and yeasts
-
Gross, S., and Robbins, E. I. (2000). Acidophilic and acid-tolerant fungi and yeasts. Hydrobiologia 433, 91-109.
-
(2000)
Hydrobiologia
, vol.433
, pp. 91-109
-
-
Gross, S.1
Robbins, E.I.2
-
31
-
-
84857065854
-
Shedding light on vampires: the phylogeny of vampyrellid amoe-bae revisited
-
doi:10.1371/journal.pone.0031165
-
Hess, S., Sausen, N., and Melkonian, M. (2012). Shedding light on vampires: the phylogeny of vampyrellid amoe-bae revisited. PLoS ONE 7:e31165. doi: 10.1371/journal.pone.0031165
-
(2012)
PLoS ONE
, vol.7
-
-
Hess, S.1
Sausen, N.2
Melkonian, M.3
-
32
-
-
0035894937
-
Stratification of microbial assemblages in Mono Lake, California, and response to a mixing event
-
Hollibaugh, J. T., Wong, P. S., Bano, N.,Pak,S.K.,Prager,E.M.,and Orrego, C. (2001). Stratification of microbial assemblages in Mono Lake, California, and response to a mixing event. Hydrobiologia 466, 45-60.
-
(2001)
Hydrobiologia
, vol.466
, pp. 45-60
-
-
Hollibaugh, J.T.1
Wong, P.S.2
Bano, N.3
Pak, S.K.4
Prager, E.M.5
Orrego, C.6
-
34
-
-
55949113492
-
Influence of mine acid on planktonic rotifers
-
Horvath, F. J., and Hummon, W. D. (1980). Influence of mine acid on planktonic rotifers. Ohio J. Sci. 80, 104-107.
-
(1980)
Ohio J. Sci.
, vol.80
, pp. 104-107
-
-
Horvath, F.J.1
Hummon, W.D.2
-
35
-
-
65349091290
-
Effect of PCR amplicon size on assessments of clone library micro-bial diversity and community structure
-
Huber, J. A., Morrison, H. G., Huse, S.M.,Neal,P.R.,Sogin,M.L., and Mark Welch, D. B. (2009). Effect of PCR amplicon size on assessments of clone library micro-bial diversity and community structure. Environ. Microbiol. 11, 1292-1302.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1292-1302
-
-
Huber, J.A.1
Morrison, H.G.2
Huse, S.M.3
Neal, P.R.4
Sogin, M.L.5
Mark Welch, D.B.6
-
36
-
-
0001913551
-
Purification of amoeba mtDNA using the UNSET procedure
-
eds J. J. Lee and A. T. Soldo (Lawrence: Allen Press Inc.), D-7
-
Hugo, E. R., Stewart, V. J., Gast, R. J., and Byers, T. J. (1992). "Purification of amoeba mtDNA using the UNSET procedure," in Protocols in Protozoology, eds J. J. Lee and A. T. Soldo (Lawrence: Allen Press Inc.), D-7.1.
-
(1992)
Protocols in Protozoolog
, pp. 1
-
-
Hugo, E.R.1
Stewart, V.J.2
Gast, R.J.3
Byers, T.J.4
-
37
-
-
0037315929
-
Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California
-
Humayoun,S.B.,Bano,N.,and Hollibaugh, J. T. (2003). Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California. Appl. Environ. Microbiol. 69, 1030-1042.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1030-1042
-
-
Humayoun, S.B.1
Bano, N.2
Hollibaugh, J.T.3
-
38
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
doi:10.1371/journal.pgen.1000255
-
Huse, S. M., Dethlefsen, L., Huber, J. A., Mark Welch, D., Relman, D. A., and Sogin, M. L. (2008). Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4:e1000255. doi: 10.1371/journal.pgen.1000255
-
(2008)
PLoS Genet
, vol.4
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Mark Welch, D.4
Relman, D.A.5
Sogin, M.L.6
-
39
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrose-quencing
-
doi:10.1186/gb-2007-8-7-r143
-
Huse, S. M., Huber, J. A., Morrison, H. G., Sogin, M. L., and Mark Welch, D. (2007). Accuracy and quality of massively parallel DNA pyrose-quencing. Genome Biol. 8:R143. doi: 10.1186/gb-2007-8-7-r143
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Mark Welch, D.5
-
40
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse, S. M., Welch, D. M., Morrison, H. G., and Sogin, M. L. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ. Microbiol. 12, 1889-1898.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
41
-
-
0037457969
-
Autochthonous eukaryotic diver-sity in hydrothermal sediment and experimental microcoloniz-ers at the Mid-Atlantic Ridge
-
Lopez-Garcia, P., Philippe, H., Gail, F., and Moreira, D. (2003). Autochthonous eukaryotic diver-sity in hydrothermal sediment and experimental microcoloniz-ers at the Mid-Atlantic Ridge. Proc. Natl. Acad. Sci. U.S.A. 100, 697-702.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 697-702
-
-
Lopez-Garcia, P.1
Philippe, H.2
Gail, F.3
Moreira, D.4
-
42
-
-
33846064724
-
Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrother-mal field
-
López-García, P., Vereshchaka, A., and Moreira, D. (2007). Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrother-mal field. Environ. Microbiol. 9, 1462-2920.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1462-2920
-
-
López-García, P.1
Vereshchaka, A.2
Moreira, D.3
-
43
-
-
44149092807
-
Adaptation of the chlorophycean Dictyosphaerium chlorelloides to stressful acidic, mine metal-rich waters as result of pre-selective mutations
-
Lopez-Rodas, V., Marva, F., Rouco, M., Costas, E., and Flores-Moya, A. (2008). Adaptation of the chlorophycean Dictyosphaerium chlorelloides to stressful acidic, mine metal-rich waters as result of pre-selective mutations. Chemosphere 72, 703-707.
-
(2008)
Chemosphere
, vol.72
, pp. 703-707
-
-
Lopez-Rodas, V.1
Marva, F.2
Rouco, M.3
Costas, E.4
Flores-Moya, A.5
-
44
-
-
80053563113
-
Genetic adap-tation and acclimation of phyto-plankton along a stress gradient in the extreme waters of the Agrio River-Caviahue Lake (Argentina)
-
Lopez-Rodas, V., Rouco, M., Sanchez-Fortun,S.,Flores-Moya,A.,and Costas, E. (2011). Genetic adap-tation and acclimation of phyto-plankton along a stress gradient in the extreme waters of the Agrio River-Caviahue Lake (Argentina). J. Phycol. 47, 1036-1043.
-
(2011)
J. Phycol.
, vol.47
, pp. 1036-1043
-
-
Lopez-Rodas, V.1
Rouco, M.2
Sanchez-Fortun, S.3
Flores-Moya, A.4
Costas, E.5
-
46
-
-
84856754081
-
Pinnularia aljustrelica sp. nov. (Bacillariophyceae), a new diatom species found in the acidic waters in the Aljustrel mining area (Portugal) and further observations on the taxonomy and ecology of P. acidophila Hoffmann et Krammer and P
-
Luis, A. T., Novais, M. H., Van De Vijver, B., Almeida, S. F. P., Ferreira Da Silva, E. A., Hoffman, L., et al. (2012). Pinnularia aljustrelica sp. nov. (Bacillariophyceae), a new diatom species found in the acidic waters in the Aljustrel mining area (Portugal) and further observations on the taxonomy and ecology of P. acidophila Hoffmann et Krammer and P. acoricola Hustedt. Fottea 12, 27-40.
-
(2012)
acoricola Hustedt Fottea
, vol.12
, pp. 27-40
-
-
Luis, A.T.1
Novais, M.H.2
Van De Vijver, B.3
Almeida, S.F.P.4
Ferreira Da Silva, E.A.5
Hoffman, L.6
-
50
-
-
33644831513
-
-
Reston,VA:U.S. Geological Survey
-
Nordstrom, D. K., Ball, J. W., and McCleskey, R. B. (2005). Ground Water to Surface Water: Chemistry of Thermal Outflows in Yellowstone National Park.Reston,VA:U.S. Geological Survey.
-
(2005)
Ground Water to Surface Water: Chemistry of Thermal Outflows in Yellowstone National Park
-
-
Nordstrom, D.K.1
Ball, J.W.2
McCleskey, R.B.3
-
51
-
-
84870260174
-
CBOL pro-tist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal king-doms
-
doi:10.1371/journal.pbio.1001419
-
Pawlowski, J., Audic, S., Adl, S., Bass, D., Belbahri, L., Berney, C., et al. (2012). CBOL pro-tist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal king-doms. PLoS Biol. 10:e1001419. doi: 10.1371/journal.pbio.1001419
-
(2012)
PLoS Biol
, vol.10
-
-
Pawlowski, J.1
Audic, S.2
Adl, S.3
Bass, D.4
Belbahri, L.5
Berney, C.6
-
52
-
-
79953695045
-
Eukaryotic richness in the abyss: insights from pyrotag sequenc-ing
-
doi:10.1371/journal.pone.0018169
-
Pawlowski, J., Christen, R., Lecroq, B., Bachar, D., Shahbazkia, H. R., Amaral-Zettler, L., et al. (2011). Eukaryotic richness in the abyss: insights from pyrotag sequenc-ing. PLoS ONE 6:e18169. doi: 10.1371/journal.pone.0018169
-
(2011)
PLoS ONE
, vol.6
-
-
Pawlowski, J.1
Christen, R.2
Lecroq, B.3
Bachar, D.4
Shahbazkia, H.R.5
Amaral-Zettler, L.6
-
54
-
-
38849138652
-
Abiogenic hydro-carbon production at lost city hydrothermal field
-
Proskurowski, G., Lilley, M. D., Seewald, J. S., Fruh-Green, G. L., Olson, E. J., Lupton, J. E., et al. (2008). Abiogenic hydro-carbon production at lost city hydrothermal field. Science 319, 604-607.
-
(2008)
Science
, vol.319
, pp. 604-607
-
-
Proskurowski, G.1
Lilley, M.D.2
Seewald, J.S.3
Fruh-Green, G.L.4
Olson, E.J.5
Lupton, J.E.6
-
55
-
-
37549027613
-
SILVA: a compre-hensive online resource for qual-ity checked and aligned riboso-mal RNA sequence data compati-ble with ARB
-
Pruesse,E.,Quast,C.,Knittel,K., Fuchs, B. M., Ludwig, W., Peplies, J., et al. (2007). SILVA: a compre-hensive online resource for qual-ity checked and aligned riboso-mal RNA sequence data compati-ble with ARB. Nucleic Acids Res. 35, 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
-
56
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
doi:10.1186/1471-2105-12-38
-
Quince,C.,Lanzen,A.,Davenport, R. J., and Turnbaugh, P. J. (2011). Removing noise from pyrosequenced amplicons. BMC Bioinformatics 12:38. doi: 10.1186/1471-2105-12-38
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
57
-
-
0035077534
-
Diatom-environmental relationships in 64 alkaline south-eastern Ontario (Canada) lakes: a diatom-based model for water qual-ity reconstructions
-
Reavie, E. D., and Smol, J. P. (2001). Diatom-environmental relationships in 64 alkaline south-eastern Ontario (Canada) lakes: a diatom-based model for water qual-ity reconstructions. J. Paleolimnol. 25, 25-42.
-
(2001)
J. Paleolimnol.
, vol.25
, pp. 25-42
-
-
Reavie, E.D.1
Smol, J.P.2
-
58
-
-
0036219866
-
Distribution, pro-duction, and ecophysiology of Picocystis strain ML in Mono Lake
-
Roesler, C. S., Culbertson, C. W., Etheridge, S. M., Goericke, R.,Kiene,R.P.,Miller,L.G., et al. (2002). Distribution, pro-duction, and ecophysiology of Picocystis strain ML in Mono Lake, California. Limnol. Oceanogr. 47, 440-452.
-
(2002)
California. Limnol. Oceanogr.
, vol.47
, pp. 440-452
-
-
Roesler, C.S.1
Culbertson, C.W.2
Etheridge, S.M.3
Goericke, R.4
Kiene, R.P.5
Miller, L.G.6
-
59
-
-
0035931866
-
Life in extreme environ-ments
-
Rothschild, L. J., and Mancinelli, R. L. (2001). Life in extreme environ-ments. Nature 409, 1092-1101.
-
(2001)
Nature
, vol.409
, pp. 1092-1101
-
-
Rothschild, L.J.1
Mancinelli, R.L.2
-
60
-
-
84863393183
-
Toward interoperable bioscience data
-
Sansone, S.-A., Rocca-Serra, P., Field,D.,Maguire,E.,Taylor,C., Hofmann, O., et al. (2012). Toward interoperable bioscience data. Nat. Genet. 44, 121-126.
-
(2012)
Nat. Genet.
, vol.44
, pp. 121-126
-
-
Sansone, S.-A.1
Rocca-Serra, P.2
Field, D.3
Maguire, E.4
Taylor, C.5
Hofmann, O.6
-
61
-
-
0142040902
-
PCR detection and analysis of the free-living amoeba Naegleria in hot springs in Yellowstone and Grand Teton National Parks
-
Sheehan,K.B.,Fagg,J.A.,Ferris, M. J., and Henson, J. M. (2003). PCR detection and analysis of the free-living amoeba Naegleria in hot springs in Yellowstone and Grand Teton National Parks. Appl. Environ. Microbiol. 69, 5914-5918.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5914-5918
-
-
Sheehan, K.B.1
Fagg, J.A.2
Ferris, M.J.3
Henson, J.M.4
-
62
-
-
0024365421
-
Planktonic rotifer community structure in Adirondack,NewYork,U.S.A. lakes in relation to acidity, trophic status and related water quality characteristics
-
Siegfried,C.A.,Bloomfield,J.A.,and Sutherland, J. W. (1989). Planktonic rotifer community structure in Adirondack,NewYork,U.S.A. lakes in relation to acidity, trophic status and related water quality characteristics. Hydrobiologia 175, 33-48.
-
(1989)
Hydrobiologia
, vol.175
, pp. 33-48
-
-
Siegfried, C.A.1
Bloomfield, J.A.2
Sutherland, J.W.3
-
64
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "Rare Biosphere"
-
Sogin, M. L., Morrison, H. G., Huber, J.A.,Welch,D.M.,Huse,S.M., Neal, P. R., et al. (2006). Microbial diversity in the deep sea and the underexplored "Rare Biosphere". Proc. Natl. Acad. Sci. U.S.A. 103, 12115-12120.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
-
65
-
-
63149108582
-
Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Rio Tinto (Huelva Spain)
-
Souza-Egipsy, V., Gonzalez-Toril, E., Zettler, E., Amaral-Zettler, L., Aguilera, A., and Amils, R. (2008). Prokaryotic community structure in algal photosynthetic biofilms from extreme acidic streams in Rio Tinto (Huelva, Spain). Int. Microbiol. 11, 251-260.
-
(2008)
Int. Microbiol.
, vol.11
, pp. 251-260
-
-
Souza-Egipsy, V.1
Gonzalez-Toril, E.2
Zettler, E.3
Amaral-Zettler, L.4
Aguilera, A.5
Amils, R.6
-
66
-
-
77951908579
-
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
-
Stoeck, T., Bass, D., Nebel, M., Christen, R.,Jones,M.D.,Breiner,H.W.,et al. (2010). Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol. Ecol. 19(Suppl. 1), 21-31.
-
(2010)
Mol. Ecol.
, vol.19
, Issue.SUPPL. 1
, pp. 21-31
-
-
Stoeck, T.1
Bass, D.2
Nebel, M.3
Christen, R.4
Jones, M.D.5
Breiner, H.W.6
-
67
-
-
33846931830
-
Statistical determination of diag-nostic species for site groups of unequal size
-
Tichý, L., and Chytrý, M. (2006). Statistical determination of diag-nostic species for site groups of unequal size. J. Veg. Sci. 17, 809-818
-
(2006)
J. Veg. Sci.
, vol.17
, pp. 809-818
-
-
Tichý, L.1
Chytrý, M.2
-
68
-
-
38649099375
-
The diversity and distribution of diatoms: from cosmopolitan to narrow endemism
-
Vanormelingen, P., Verleyen, E., and Vyverman, W. (2008). The diversity and distribution of diatoms: from cosmopolitan to narrow endemism. Biodivers. Conserv. 17, 393-405.
-
(2008)
Biodivers. Conserv.
, vol.17
, pp. 393-405
-
-
Vanormelingen, P.1
Verleyen, E.2
Vyverman, W.3
-
69
-
-
0000994310
-
Toxicity of heavy metals to freshwater algae: a review
-
Whitton, B. A. (1970). Toxicity of heavy metals to freshwater algae: a review. Phykos 9, 116-125.
-
(1970)
Phykos
, vol.9
, pp. 116-125
-
-
Whitton, B.A.1
-
70
-
-
0036315444
-
Ciliated protozoa in Lake Nakuru, a shallow alkaline-saline lake in Kenya: seasonal variation, potential production and role in the food web Arch
-
Yasindi, A., Lynn, D., and Taylor, W. (2002). Ciliated protozoa in Lake Nakuru, a shallow alkaline-saline lake in Kenya: seasonal variation, potential production and role in the food web Arch. Hydrobiol. 154, 311-325.
-
(2002)
Hydrobiol
, vol.154
, pp. 311-325
-
-
Yasindi, A.1
Lynn, D.2
Taylor, W.3
-
71
-
-
79955749319
-
The "minimum information about a MARKer gene sequence" (MIMARKS) specification
-
Yilmaz,P.,Kottmann,R.,Field,D., Knight,R.,Cole,J.A.,Amaral-Zettler, L. A., et al. (2011). The "minimum information about a MARKer gene sequence" (MIMARKS) specification. Nat. Biotechnol. 29, 415-420.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 415-420
-
-
Yilmaz, P.1
Kottmann, R.2
Field, D.3
Knight, R.4
Cole, J.A.5
Amaral-Zettler, L.A.6
|