Colored multi-neuron image processing for segmenting and tracing neural circuits

Proceedings - International Conference on Image Processing, ICIP

Volumn , Issue , 2012, Pages 2025-2028

  Shao, Hao Chiang ^a   Cheng, Wei Yun ^a   Chen, Yung Chang ^a   Hwang, Wen Liang ^b  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b INSTITUTE OF INFORMATION SCIENCE   (Taiwan)

Author keywords

Flybow image; image matting; neuron tracing; segmentation

Indexed keywords

BRAINBOW; FLYBOW IMAGE; IMAGE MATTING; IMAGE VOLUME; INTRICATE STRUCTURES; NEURAL CIRCUITS; NEURON TRACINGS; SINGLE-NEURON;

COLLECTOR EFFICIENCY; IMAGE SEGMENTATION;

NEURONS;

EID: 84875853613     PISSN: 15224880     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICIP.2012.6467287     Document Type: Conference Paper

References (10)

1. J. Livet, T. A. Weissman, H. Kang, R. W. Draft, J. Lu, R. A. Bennis, J. R. Sanes, and J. W. Lichtman, "Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system", Nature, vol.450, pp.56-62, 2007.
2. D. Hadjieconomou, S. Rotkopf, C. Alexandre, D. Bell, B. Dickson, and I. Salecker, "Flybow: genetic multicolor cell labeling for neural circuit analysis in drosophila melanogaster", Nature Methods, vol.8, pp.260-266, 2011.
3. P.C. Lee, H.M. Chang, C.Y. Lin, A.S. Chiang, and Y.T. Ching, "Constructing neuronal structure from 3D confocal microscopic images", Journal of Medical and Biological Engineering, vol.29, pp.1-6, 2009.
4. H. Peng, F. Long, and G. Myers, "Automatic 3D neuron tracing using all-path pruning", In Proceedings of Bioinformatics [ISMB/ECCB] 2011, pp.239-247.
5. A. Rodriguez, D. Ehlenberger, P. Hof, and S. Wearne, "Three- dimensional neuron tracing by voxel scooping", Journal of Neuroscience Methods, vol.184, pp.169-175, 2011.
6. E. Bas and D. Erdogmus, "Piecewise linear cylinder models for 3-dimensional axon segmentation in brainbow imagery", In Proceedings of ISBI 2010, pp.1297-1300.
7. T.Y. Wu, H.H. Juan, Henry H.S. Lu, and A.S. Chiang, "A crosstalk tolerated neural segmentation methodology for Brainbow images", Proceedings of 4th International Symposium On Applied Sciences In Biomedical And Communication Technologies (ISABAL), 2011.
8. H.C. Shao, W.Y. Cheng, Y.C. Chen, and W.L. Hwang, "Flybow image segmentation for tracing neuron circuits in Drosophila brain", to appear in BIOSIGNALS 2012, Feb. 1-4, 2012, Vilamoura, Protugal1.
9. A. Levin, D. Lischinski, and Y. Weiss, "A closed-form solution to natural image matting", IEEE Trans. Pattern Anal. Mach. Intell., vol. 30, pp.228-242, Feb., 2008
10. A. Levin, A. Rav-Acha, and D. Lischinski, "Spectral Matting", IEEE Trans. Pattern Anal. Mach. Intell., vol.30, pp.1699-1712, Oct., 2008.