Comparison of complete mitochondrial genomes of pine wilt nematode Bursaphelenchus xylophilus and Bursaphelenchus mucronatus (Nematoda: Aphelenchoidea) and development of a molecular tool for species identification

Gene

Volumn 520, Issue 1, 2013, Pages 39-46

  Sultana, Tahera ^a   Han, Hyerim ^b   Park, Joong Ki ^c  

^a Inha University   (South Korea)

^b Korea Forest Research Institute   (South Korea)

^c Chungbuk National University College of Medicine   (South Korea)

Author keywords

Bursaphelenchus mucronatus; Bursaphelenchus xylophilus; Complete mitochondrial genome; Molecular identification; Multiplex PCR

Indexed keywords

CIRCULAR DNA; LARGE SUBUNIT RIBOSOMAL RNA; MITOCHONDRIAL DNA; PRIMER DNA; SMALL SUBUNIT RIBOSOMAL RNA; TRANSFER RNA;

ARTICLE; BURSAPHELENCHUS MUCRONATUS; BURSAPHELENCHUS XYLOPHILUS; COMPARATIVE STUDY; CONTROLLED STUDY; CROSS REACTION; DNA BASE COMPOSITION; GENE ORDER; GENE SEQUENCE; GENETIC CODE; GENETIC ORGANIZATION; MITOCHONDRIAL GENOME; MOLECULAR DIAGNOSIS; MORPHOLOGY; MULTIPLEX POLYMERASE CHAIN REACTION; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PINE; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA GENE; SPECIES IDENTIFICATION; WILTING;

ANIMALS; BASE SEQUENCE; DNA BARCODING, TAXONOMIC; DNA, HELMINTH; GENOME, HELMINTH; GENOME, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; TYLENCHIDA;

APHELENCHOIDEA; BURSAPHELENCHUS; BURSAPHELENCHUS MUCRONATUS; BURSAPHELENCHUS XYLOPHILUS; NEMATODA;

EID: 84875812722     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.02.006     Document Type: Article

References (56)

1. Braasch H., et al. Records of Bursaphelenchus spp. (Nematoda: Pasatistaphelenchidae) in coniferous timber imported from the Asian part of Russia. For. Pathol. 2001, 31:129-140.
2. Braasch H., et al. Bursaphelenchus vallesianus sp. n. - a new species of the Bursaphelenchus sexdentati group (Nematoda: Parasitaphelenchidae). Nematol. Medit. 2004, 32:71-79.
3. Burgermeister W., et al. ITS-RFLP patterns for differentiation of 26 Bursaphelenchus species (Nematoda: Parasitaphelenchidae) and observations on their distribution. Russ. J. Nematol. 2005, 13:29-42.
4. Cheng H.R. The occurrence of a pine wilting disease caused by a nematode found in Nanjing. For. Pest Dis. 1983, 4:1-5.
5. Dwinell L.D. First record of pinewood nematode (Bursaphelenchus xylophilus) in Mexico. Plant Dis. 1993, 77:846.
6. Folmer O., et al. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
7. Fuchs A.G. Neue parasitische und halbparasitische Nematoden bei Borkenkäfern und einige andere Nematoden. I. Teil die Parasiten derWaldgartner Myelophilus piniperda L. und minor Hartig und die Genera Rhabditis Dujardin, 1845 und Aphelenchus Bastian, 1865. Zoologische Jahrbücher, Abteilung für Systematik Oekologie und Geographie der Tiere, Jena 1937, 70:291-380.
8. Geraert E. The use of the female reproductive systems in nematode systematics. Concepts in Nematode Systematics 1983, 73-84. Academic Press, London. A.R. Stone, H.M. Platt, L.F. Khalil (Eds.).
9. Giblin-Davis R.M., et al. Bursaphelenchus anatolius n. sp. (Nematoda: Parasitaphelenchidae), an associate of bees in the genus Halictus. J. Nematol. 2005, 37:336-342.
10. Gissi C., et al. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 2008, 101:301-320.
11. Han H., et al. A Simple PCR-RFLP for identification of Bursaphelenchus spp. collected from Korea. Plant Pathol. J. 2008, 24:159-163.
12. Hoyer U., et al. Identification of Bursaphelenchus species (Nematoda: Aphelenchoididae) on the basis of amplified ribosomal DNA (ITS-RFLP). Nachrichtenbl. Dtsch. Pflanzenschutzdienst. 1998, 50:273-277.
13. Hu M., et al. The mitochondrial genome of Strongyloides stercoralis (Nematoda)-idiosyncratic gene order and evolutionary implications. Int. J. Parasitol. 2003, 33:1393-1408.
14. Hunt D.J. A checklist of the Aphelenchoidea (Nematoda: Tylenchina). J. Nematode Morphol. Syst. 2008, 10:99-135.
15. Iwahori H., et al. PCR-RFLP and sequencing analysis of ribosomal DNA of Bursaphelenchus nematodes related to pine wilt disease. Fundam. Appl. Nematol. 1998, 21:655-666.
16. Iwahori H., et al. A simple, polymerase chain reaction-restriction fragment length polymorphism-aided diagnosis method for pine wilt disease. For. Pathol. 2000, 30:157-164.
17. Jeon H.K., et al. Differential diagnosis of Taenia asiatica using multiplex PCR. Exp. Parasitol. 2009, 121:151-156.
18. Jex A.R., et al. The mitochondrial genomes of Ancylostoma caninum and Bunostomum phlebotomum - two hookworms of animal health and zoonotic importance. BMC Genomics 2009, 10:79.
19. Kang J.S., et al. Development of an efficient PCR-based diagnosis protocol for the identification of the pinewood nematode, Bursaphelenchus xylophilus (Nematoda: Aphelenchoididae). Nematology 2004, 6:279-285.
20. Kang S.H., et al. The mitochondrial genome sequence of Enterobius vermicularis (Nematoda: Oxyurida) - an idiosyncratic gene order and phylogenetic information for chromadorean nematodes. Gene 2009, 429:87-97.
21. Kanzaki N., Futai K. Description and phylogeny of Bursaphelenchus luxuriosae n. sp. (Nematoda: Aphelenchoididae) isolated from Acalolepta luxuriosa (Coleoptera: Cerambycidae). Nematology 2003, 5:565-572.
22. Kim K.H., et al. The complete mitochondrial genome of Anisakis simplex (Ascaridida: Nematoda) and phylogenetic implications. Int. J. Parasitol. 2006, 36:319-328.
23. Kim K.H., et al. Characterization of the complete mitochondrial genome of Diphyllobothrium nihonkaiense (Diphyllobothriidae: Cestoda), and development of molecular markers for differentiating fish tapeworms. Mol. Cells 2007, 23:379-390.
24. Kiyohara T., Tokushige Y. Inoculation experiments of a nematode, Bursaphelenchus sp., onto pine trees. J. Jpn. For. Soc. 1971, 53:10-218.
25. Kocher T.D., et al. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. U. S. A. 1989, 86:6196-6200.
26. Kulinich O.A., et al. Occurrence and distribution of the nematode Bursaphelenchus mucronatus in the Russian Far East. Russ. J. Nematol. 1994, 2:113-119.
27. Kurabayashi A., Ueshima R. Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: systematic implication of the genome organization. Mol. Biol. Evol. 2000, 17:266-277.
28. Lavrov D.V., Brown W.M. Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAs and has a gene arrangement relatable to those of coelomate metazoans. Genetics 2001, 157:621-637.
29. Li M.W., et al. The complete mitochondrial genomes for three Toxocara species of human and animal health significance. BMC Genomics 2008, 9:224.
30. Lorenzen S. Entwurf eines phylogenetischen systems der freilebenden nematoden. Veröff. Inst. Meeresforsch Bremerh. 1981, (Suppl. 7). (472 pp.).
31. Lowe T.M., Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genome sequences. Nucleic Acids Res. 1997, 25:955-964.
32. Mamiya Y., Enda N. Bursaphelenchus mucronatus n. sp. (Nematoda: Aphelenchoididae) from pine wood and its biology and pathogenicity to pine tree. Nematologica 1979, 25:353-361.
33. Mamiya Y., Kiyohara T. Description of Bursaphelenchus lignicolus n. sp. (Nematoda: Aphelenchoididae) from pine wood and histopathology of nematode-infested trees. Nematologica 1972, 18:120-124.
34. Matsunaga K., Togashi K. A simple method for discriminating Bursaphelenchus xylophilus and B. mucronatus by species-specific polymerase chain reaction primer pairs. Nematology 2004, 6:273-277.
35. Mota M.M., et al. First report of Bursaphelenchus xylophilus in Portugal and in Europe. Nematology 1999, 1:727-734.
36. Okimoto R., et al. Repeated sequence sets in mitochondrial DNA molecules of root knot nematodes (Meloidogyne): nucleotide sequences, genome location and potential for host-race identification. Nucleic Acids Res. 1991, 19:1619-1626.
37. Okimoto R., et al. The mitochondrial genomes of two Nematodes, Caenorhabditis elegans and Ascaris suum. Genetics 1992, 130:471-498.
38. Palmisano A.M., et al. Bursaphelenchus sinensis sp. n. and B. thailandae Braasch et Braasch-Bidasak in packaging wood from China. Nematol. Medit. 2004, 32:57-65.
39. Park J.K., et al. Monophyly of clade III nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences. BMC Genomics 2011, 12:392.
40. Pesole G., et al. Nucleotide substitution rate of mammalian mitochondrial genomes. J. Mol. Evol. 1999, 48:427-434.
41. Robbins K. Distribution of the pinewood nematode in the United States. Proceedings of the National Pine Wilt Disease Workshop. III. Natural History Survey, Champaign, IL, USA 1982, 3-6. J.E. Appleby, R.B. Malek (Eds.).
42. Ryss A., et al. A synopsis of the genus Bursaphelenchus Fuchs, 1937 (Aphelenchida: Parasitaphelenchidae) with keys to species. Nematology 2005, 7:393-458.
43. Saccone C., et al. The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J. Mol. Evol. 1991, 33:83-91.
44. Scouras A., Smith M.J. A novel mitochondrial gene order in the crinoid echinoderm Florometra serratissima. Mol. Biol. Evol. 2001, 18:61-73.
45. Shin S.C. Pine wilt disease in Korea. Pine Wilt Disease 2008, 26-32. Springer, Japan. B.G. Zhao (Ed.).
46. Steiner G., Buhrer E.M. Aphelenchoides xylophilus n. sp., a nematode associated with blue-stain and other fungi in timber. J. Agri. Res. 1934, 48:949-951.
47. Sultana T., et al. Comparative analysis of complete mitochondrial genome sequences confirms independent origins of plant-parasitic nematodes. BMC Evol. Biol. 2013, 13:12.
48. Tomminen J., et al. Occurrence of the nematode Bursaphelenchus mucronatus Mamiya and Enda, 1979 (Nematoda: Aphelenchoididae) in Finland. Silva Fenn. 1989, 23:271-277.
49. Tzean S., Jan S. The occurrence of pinewood nematode, Bursaphelenchus xylophilus, in Taiwan. Proceedings of the 6th ROC Symposium of Electron Microscopy 1985, 38-39.
50. Vieira P., et al. First report of Bursaphelenchus mucronatus from Turkey, associated with Pinus nigra. XXVII ESN International Symposium, Rome 2004, 14-18.
51. Vincent B., et al. Occurrence of Bursaphelenchus mucronatus (Nematoda: Aphelenchoididae) in France and association with Monochamus galloprovincialis (Coleoptera: Cerambycidae). Ann. For. Sci. 2008, 65:111.
52. Wingfield M.J., et al. Comparison of the pine wood nematode, Bursaphelenchus xylophilus, from pine and balsam fir. Eur. J. For. Pathol. 1983, 13:360-373.
53. Yi C., et al. First finding of the pine wood nematode, Bursaphelenchus xylophilus (Steiner and Buhrer) Nickle and its insect vector in Korea. Res. Rep. For. Res. Inst. Seoul 1989, 38:141-149.
54. Zhao B.G. Pine wilt disease in China. Pine Wilt Disease 2008, 18-25. Springer, Japan. B.G. Zhao (Ed.).
55. Zheng J., et al. Molecular characterization of some Asian isolates of Bursaphelenchus xylophilus and B. mucronatus using PCR-RFLPs and sequences of ribosomal DNA. Russ. J. Nematol. 2003, 11:17-22.
56. Zhuo K., et al. A multiplex one-step PCR method for the simultaneous identification of Bursaphelenchus xylophilus, B. mucronatus and B. doui - three species within the xylophilus group. For. Pathol. 2011, 41:66-69.