Estimating animal population density using passive acoustics

Biological Reviews

Volumn 88, Issue 2, 2013, Pages 287-309

  Marques, Tiago A ^a,b   Thomas, Len ^a   Martin, Stephen W ^c   Mellinger, David K ^d   Ward, Jessica A ^e   Moretti, David J ^e   Harris, Danielle ^a   Tyack, Peter L ^a  

^a UNIVERSITY OF ST ANDREWS   (United Kingdom)

^b Center of Statistics Applications of Lisbon University CEAUL   (Portugal)

^c Space and Naval Warfare Systems Center Pacific   (United States)

^d NOAA PACIFIC MARINE ENVIRONMENTAL LABORATORY   (United States)

^e NAVAL UNDERSEA WARFARE CENTER   (United States)

Author keywords

Acoustic surveys; Bioacoustics; Density estimation; Distance sampling; Fixed sensors; Hydrophones; Passive acoustic monitoring; Spatially explicit capture recapture

Indexed keywords

AMPHIBIA; ANIMALIA; AVES; HEXAPODA; MAMMALIA;

ACOUSTICS; ANIMAL; BIOLOGICAL MODEL; ECOSYSTEM; ENVIRONMENTAL PROTECTION; INFORMATION PROCESSING; POPULATION DENSITY;

ACOUSTICS; ANIMALS; CONSERVATION OF NATURAL RESOURCES; DATA COLLECTION; ECOSYSTEM; MODELS, BIOLOGICAL; POPULATION DENSITY;

EID: 84875803825     PISSN: 14647931     EISSN: 1469185X     Source Type: Journal    
DOI: 10.1111/brv.12001     Document Type: Article

References (174)

1. Abbot, T. A., Premus, V. E. & Abbot, P. A. (2010). A real-time method for autonomous passive acoustic detection-classification of humpback whales. The Journal of the Acoustical Society of America 127, 2894-2903.
2. Acevedo, M. A., Corrada-Bravo, C. J., Corrada-Bravo, H., Villanueva-Rivera, L. J. & Aide, T. M. (2009). Automated classification of bird and amphibian calls using machine learning: a comparison of methods. Ecological Informatics 4, 206-214.
3. Acevedo, M. A. & Villanueva-Rivera, L. J. (2006). Using automated digital recording systems as effective tools for the monitoring of birds and amphibians. Wildlife Society Bulletin 34, 211-214.
4. Adi, K., Johnson, M. T. & Osiejuk, T. S. (2010). Acoustic censusing using automatic vocalization classification and identity recognition. The Journal of the Acoustical Society of America 127, 874-883.
5. Akamatsu, T., Matsuda, A., Suzuki, S., Wang, D., Wang, K., Suzuki, M., Muramoto, H., Sugiyama, N. & Oota, K. (2005). New stereo acoustic data logger for free-ranging dolphins and porpoises. Marine Technology Society Journal 39, 3-9.
6. Akamatsu, T., Wang, D., Wang, K., Li, S., Dong, S., Zhao, X., Barlow, J., Stewart, B. S. & Richlen, M. (2008). Estimation of the detection probability for Yangtze finless porpoises (Neophocaena phocaenoides asiaeorientalis) with a passive acoustic method. The Journal of the Acoustical Society of America 123, 4403-4411.
7. Alldredge, M. W., Simons, T. R. & Pollock, K. H. (2007). A field evaluation of distance measurement error in auditory avian point count surveys. Journal of Wildlife Management 71, 2759-2766.
8. Amorim, M., Simões, J., Almada, V. & Fonseca, P. (2011). Stereotypy and variation of the mating call in the Lusitanian toadfish, Halobatrachus didactylus. Behavioral Ecology and Sociobiology 65, 707-716.
9. Amorim, M. & Vasconcelos, R. O. (2008). Variability in the mating calls of the Lusitanian toadfish Halobatrachus didactylus: potential cues for individual recognition. Journal of Fish Biology 72, 1355-1368.
10. Amorim, M. C. P., Vasconcelos, R. O., Marques, J. F. & Almada, F. (2006). Seasonal variation of sound production in the Lusitanian toadfish, Halobatrachus didactylus. Journal of Fish Biology 69, 1892-1899.
11. Anderson, D. R., Burnham, K. P., Lubow, B. C., Thomas, L., Corn, P. S., Medica, P. A. & Marlow, R. W. (2001). Field trials of line transect methods applied to estimation of desert tortoise abundance. Journal of Wildlife Management 65, 583-597.
12. Anderson, K. A., Rountree, R. A. & Juanes, F. (2008). Soniferous fishes in the Hudson river. Transactions of the American Fisheries Society 137, 616-626.
13. André, M., van der Schaar, M., Zaugg, S., Houégnigan, L., Sánchez, A. & Castell, J. (2011). Listening to the deep: live monitoring of ocean noise and cetacean acoustic signals. Marine Pollution Bulletin 63, 18-26.
14. Aubauer, R., Lammers, M. O. & Au, W. W. L. (2000). One-hydrophone method of estimating distance and depth of phonating dolphins in shallow water. The Journal of the Acoustical Society of America 107, 2744-2749.
15. Baird, R. W., Webster, D. L., Schorr, G. S., Mcsweeney, D. J. & Barlow, J. (2008). Diel variation in beaked whale diving behaviour. Marine Mammal Science 24, 630-642.
16. Baggenstoss, P. M. (2011). An algorithm for the localization of multiple interfering sperm whales using multi-sensor time difference of arrival. The Journal of the Acoustical Society of America 130, 102-112.
17. Bardeli, R., Wolff, D., Kurth, F., Koch, M., Tauchert, K.-H. & Frommolt, K.-H. (2010). Detecting bird sounds in a complex acoustic environment and application to bioacoustic monitoring. Pattern Recognition Letters 31, 1524-1534.
18. Barlow, J. & Taylor, B. (2005). Estimates of sperm whale abundance in the northeastern temperate Pacific from a combined acoustic and visual survey. Marine Mammal Science 21, 429-445.
19. Barnes, C., Best, M., Johnson, F., Phibbs, P. & Pirenne, B. (2008). Transforming the ocean sciences through cabled observatories. Marine Technology Reporter 51, 30-36.
20. Baumgartner, M. F. & Fratantoni, D. M. (2008). Diel periodicity in both sei whale vocalization rates and the vertical migration of their copepod prey observed from ocean gliders. Limnology and Oceanography 53, 2197-2209.
21. Baumgartner, M. F., Van Parijs, S. M., Wenzel, F. W., Tremblay, C. J., Esch, H. C. & Warde, A. M. (2008). Low frequency vocalizations attributed to sei whales (Balaenoptera borealis). The Journal of the Acoustical Society of America 124, 1339-1349.
22. Bee, M., Kozich, C., Blackwell, K. & Gerhardt, H. C. (2001). Individual variation in advertisement calls of territorial male green frogs, Rana clamitans: implications for individual discrimination. Ethology 107, 65-84.
23. von Benda-Beckmann, A., Lam, F., Moretti, D., Fulkerson, K., Ainslie, M., van IJsselmuide, S., Theriault, J. & Beerens, S. (2010). Detection of Blainville's beaked whales with towed arrays. Applied Acoustics 71, 1027-1035.
24. Bingham, G. (2011). Status and Applications of Acoustic Mitigation and Monitoring Systems for Marine Mammals. U.S. Department of the Interior, Bureau of Ocean Energy Management, Regulation and Enforcement, Gulf of Mexico OCS Region, Boston.
25. Blumstein, D. T., Mennill, D. J., Clemins, P., Girod, L., Yao, K., Patricelli, G., Deppe, J. L., Krakauer, A. H., Clark, C., Cortopassi, K. A., Hanser, S. F., McCowan, B., Ali, A. M. & Kirschel, A. N. G. (2011). Acoustic monitoring in terrestrial environments using microphone arrays: applications, technological considerations and prospectus. Journal of Applied Ecology 48, 758-767.
26. Borchers, D. L. (2012). A non-technical overview of spatially explicit capture-recapture models. Journal of Ornithology 152, 435-444.
27. Borchers, D. L., Buckland, S. T. & Zucchini, W. (2002). Estimating Animal Abundance. Springer, New York.
28. Borchers, D. L. & Burnham, K. P. (2004). General formulation for distance sampling. In Advanced Distance Sampling (eds S. T. Buckland, D. R. Anderson, K. P. Burnham, J. L. Laake, D. L. Borchers and L. Thomas ), pp. 307-392. Oxford University Press, Oxford.
29. Borchers, D. L. & Efford, M. (2008). Spatially explicit maximum likelihood methods for capture-recapture studies. Biometrics 64, 377-385.
30. Borchers, D. L., Marques, T. A., Gunnlaugsson, T. & Jupp, P. E. (2010). Estimating distance sampling detection functions when distances are measured with errors. Journal of Agricultural, Biological, and Environmental Statistics 15, 346-361.
31. Bower, J. L. & Clark, C. W. (2005). A field test of the accuracy of a passive acoustic location system. Bioacoustics 15, 1-14.
32. Brandes, T. S., Naskrecki, P. & Figueroa, H. K. (2006). Using image processing to detect and classify narrow-band cricket and frog calls. The Journal of the Acoustical Society of America 120, 2950-2957.
33. Bridges, A. S. & Dorcas, M. E. (2000). Temporal variation in anuran calling behavior: implications for surveys and monitoring programs. Copeia 2000, 587-592.
34. Bucci, M., Petryszyn, Y. & Krausman, P. R. (2010). Occurrence and activity of bats at three national monuments in central Arizona. The Southwestern Naturalist 55, 207-216.
35. Buckland, S. T. (2006). Point transect surveys for songbirds: robust methodologies. The Auk 123, 345-357.
36. Buckland, S. T., Anderson, D. R., Burnham, K. P., Laake, J. L., Borchers, D. L. & Thomas, L. (2001). Introduction to Distance Sampling - Estimating Abundance of Biological Populations. Oxford University Press, Oxford.
37. Buckland, S. T., Anderson, D. R., Burnham, K. P., Laake, J. L., Borchers, D. & Thomas, L. (eds) (2004). Advanced Distance Sampling. Oxford University Press, Oxford.
38. Burgess, W. C. (2009). The Acousonde: a miniature autonomous wideband recorder. The Journal of the Acoustical Society of America 125, 2588.
39. Burgess, W. C., Tyack, P. L., LeBoeuf, B. J. & Costa, D. P. (1998). A programmable acoustic recording tag and first results from free-ranging northern elephant seals. Deep Sea Research II 45, 1327-1351.
40. Cato, D. H. (1998). Simple methods of estimating source levels and locations of marine animal sounds. The Journal of the Acoustical Society of America 104, 1667-1678.
41. Cato, D., McCauley, R., Rogers, T. & Noad, M. (2006). Passive acoustics for monitoring marine mammals - progress and challenges. In Proceedings of ACOUSTICS 2006 (ed. T. McMinn ), pp. 453-460. Australian and New Zealand Acoustical Societies, Auckland.
42. Celis-Murillo, A., Deppe, J. L. & Allen, M. F. (2009). Using soundscape recordings to estimate bird species abundance, richness, and composition. Journal of Field Ornithology 80, 64-78.
43. Cheng, J., Sun, Y. & Ji, L. (2010). A call-independent and automatic acoustic system for the individual recognition of animals: a novel model using four passerines. Pattern Recognition 43, 3846-3852.
44. Clark, C. W. (1995). Application of U.S. Navy underwater hydrophone arrays for scientific research on whales. Report of the International Whaling Commission 44, 210-212.
45. Clark, C. W., Borsani, F. & Notarbartolo-di-Sciara, G. (2002). Vocal activity of fin whales, Balaenoptera physalus, in the Ligurian Sea. Marine Mammal Science 18, 286-295.
46. Clark, C. W., Brown, M. W. & Corkeron, P. (2010). Visual and acoustic surveys for North Atlantic right whales, Eubalaena glacialis, in Cape Cod Bay, Massachusetts, 2001-2005: management implications. Marine Mammal Science 26, 837-854.
47. Conn, P., Arthur, A., Bailey, L. & Singleton, G. (2006). Estimating the abundance of mouse populations of known size: promises and pitfalls of new methods. Ecological Applications 16, 829-837.
48. Cox, M. J., Borchers, D. L., Demer, D. A., Cutter, G. R. & Brierley, A. S. (2011). Estimating the density of Antarctic krill (Euphausia superba) from multi-beam echo-sounder observations using distance sampling methods. Applied Statistics 60, 301-316.
49. Dawson, D. K. & Efford, M. G. (2009). Bird population density estimated from acoustic signals. Journal of Applied Ecology 46, 1201-1209.
50. Defler, T. & Pintor, D. (1985). Censusing primates by transect in a forest of known primate density. International Journal of Primatology 6, 243-259.
51. Driscoll, D. A. (1998). Counts of calling males as estimates of population size in the endangered frogs Geocrinia alba and G. Vitellina. Journal of Herpetology 32, 475-481.
52. Dudzinski, K. M., Brown, S. J., Lammers, M., Lucke, K., Mann, D. A., Simard, P., Wall, C. C., Rasmussen, M. H., Magnúsdóttir, E. E., Tougaard, J. & Eriksen, N. (2011). Trouble-shooting deployment and recovery options for various stationary passive acoustic monitoring devices in both shallow- and deep-water applications. The Journal of the Acoustical Society of America 129, 436-448.
53. Dunn, R. A. & Hernandez, O. (2009). Tracking blue whales in the eastern tropical Pacific with an ocean-bottom seismometer and hydrophone array. The Journal of the Acoustical Society of America 126, 1084-1094.
54. Efford, M. G. (2004). Density estimation in live-trapping studies. Oikos 106, 598-610.
55. Efford, M. G., Dawson, D. K. & Borchers, D. L. (2009). Population density estimated from locations of individuals on a passive detector array. Ecology 90, 2676-2682.
56. Falcone, E., Schorr, G., Douglas, A., Calambokidis, J., Henderson, E., McKenna, M., Hildebrand, J. & Moretti, D. (2009). Sighting characteristics and photo-identification of Cuvier's beaked whales (Ziphius cavirostris) near San Clemente Island, California: a key area for beaked whales and the military? Marine Biology 156, 2631-2640.
57. Figueroa, H. (2011). XBAT extensible bioacoustic tool. Available at http://xbat.org/documentation.html Accessed 27.2.2011.
58. Fischer, F. P., Schulz, U., Schubert, H., Knapp, P. & Schmoger, M. (1997). Quantitative assessment of grassland quality: acoustic determination of population sizes of orthopteran indicator species. Ecological Applications 7, 909-920.
59. Forrest, T. G. (1988). Using insect sounds to estimate and monitor their populations. The Florida Entomologist 71, 416-426.
60. Fox, E. (2008). A new perspective on acoustic individual recognition in animals with limited call sharing or changing repertoires. Animal Behaviour 75, 1187-1194.
61. Fox, C. G., Matsumoto, H. & Lau, T. K. A. (2001). Monitoring Pacific Ocean seismicity from an autonomous hydrophone array. Journal of Geophysical Research 106, 4183-4206.
62. Fristrup, K. M. & Clark, C. (1997). Combining visual and acoustic survey data to enhance density estimation. Report of the International Whaling Commission 47, 933-936.
63. Gannon, D. P. (2008). Passive acoustic techniques in fisheries science: a review and prospectus. Transactions of the American Fisheries Society 137, 638-656.
64. Gardiner, T., Hill, J. & Chesmore, D. (2005). Review of the methods frequently used to estimate the abundance of orthoptera in grassland ecosystems. Journal of Insect Conservation 9, 151-173.
65. Gedamke, J. & Robinson, S. M. (2010). Acoustic survey for marine mammal occurrence and distribution off East Antarctica (30-80°E) in January-February 2006. Deep Sea Research Part II: Topical Studies in Oceanography 57, 968-981.
66. George, J., Zeh, J., Suydam, R. & Clark, C. (2004). Abundance and population trend (1978-2001) of western Arctic bowhead whales surveyed near Barrow. Marine Mammal Science 20, 755-773.
67. Gerrodette, T., Taylor, B. L., Swift, R., Rankin, S., Jaramillo-Legorreta, A. M. & Rojas-Bracho, L. A. (2011). Combined visual and acoustic estimate of 2008 abundance, and change in abundance since 1997, for the vaquita, Phocoena sinus. Marine Mammal Science 27, E79-E100.
68. Gillespie, D., Gordon, J., McHugh, R., McLaren, D., Mellinger, D. K., Redmond, P., Thode, A., Trinder, P. & Deng, X. Y. (2008). PAMGUARD: semiautomated, open source software for real-time acoustic detection and localisation of cetaceans. Proceedings of the Institute of Acoustics 30, 9.
69. Gordon, J. C. D. (1991). Evaluation of a method for determining the length of sperm whales (Physeter catodon) from their vocalizations. Journal of Zoology 224, 301-314.
70. Grafe, T. U. & Meuche, I. (2005). Chorus tenure and estimates of population size of male European tree frogs Hyla arborea: implications for conservation. Amphibia-Reptilia 26, 437-444.
71. Hagstrum, D. W., Webb, J. C. & Vick, K. W. (1988). Acoustical detection and estimation of Rhyzopertha dominica (F.) larval populations in stored wheat. The Florida Entomologist 71, 441-447.
72. Harris, D. (2012). Estimating whale abundance using sparse hydrophone arrays. PhD Thesis: University of St. Andrews.
73. Hastie, G. D., Swift, R. J., Gordon, J. C., Slesser, G. & Turrell, W. R. (2003). Sperm whale distribution and seasonal density in the Faroe Shetland Channel. Journal of Cetacean Research and Management 5, 247-252.
74. Hayes, S. A., Mellinger, D. K., Croll, D. A., Costa, D. P. & Borsani, J. F. (2000). An inexpensive passive acoustic system for recording and localizing wild animal sounds. The Journal of the Acoustical Society of America 107, 3552-3555.
75. Hiby, A. R. & Ward, A. J. (1986). Analysis of cue-counting and blow rate estimation experiments carried out during the 1984/85 IDCR minke whale assessment cruise. Report of the International Whaling Commission 36, 473-476.
76. Hobson, K. A., Rempel, R. S., Greenwood, H., Turnbull, B. & Van Wilgenburg, S. L. (2002). Acoustic surveys of birds using electronic recordings: new potential from an omnidirectional microphone system. Wildlife Bulletin 30, 709-720.
77. Holt, S. A. (2008). Distribution of red drum spawning sites identified by a towed hydrophone array. Transactions of the American Fisheries Society 137, 551-561.
78. Horrocks, J., Hamilton, D. C. & Whitehead, H. (2011). A likelihood approach to estimating animal density from binary acoustic transects. Biometrics 67, 681-690.
79. Horvitz, D. G. & Thompson, D. J. (1952). A generalization of sampling without replacement from a finite universe. Journal of the American Statistical Association 47, 663-685.
80. Hugel, S. (2012). Impact of native forest restoration on endemic crickets and katydids density in Rodrigues island. Journal of Insect Conservation 16, 473-477.
81. Ichikawa, K., Tsutsumi, C., Arai, N., Akamatsu, T., Shinke, T., Hara, T. & Adulyanukosol, K. (2006). Dugong (Dugong dugon) vocalization patterns recorded by automatic underwater sound monitoring systems. The Journal of the Acoustical Society of America 119, 3726-3733.
82. IUCN (2003). Guidelines for Application of IUCN Red List Criteria at Regional Levels: Version 3.0. IUCN Species Survival Commission, IUCN, Gland and Cambridge.
83. Johnson, J. B., Saenz, D., Burt, D. B. & Conner, R. N. (2009). An automated technique for monitoring nocturnal avian vocalizations. Bulletin of the Texas Ornithological Society 35, 25-29.
84. Johnson, M. P. & Tyack, P. L. (2003). A digital acoustic recording tag for measuring the response of wild marine mammals to sound. IEEE Journal of Oceanic Engineering 28, 3-12.
85. Juanes, F. (2002). Listening to fish: an international workshop on the application of passive acoustics in fisheries. Reviews in Fish Biology and Fisheries 12, 105-106.
86. Kimura, S., Akamatsu, T., Li, S., Dong, S., Dong, L., Wang, K., Wang, D. & Arai, N. (2010). Density estimation of Yangtze finless porpoises using passive acoustic sensors and automated click train detection. The Journal of the Acoustical Society of America 128, 1435-1445.
87. Kimura, S., Akamatsu, T., Wang, K., Wang, D., Li, S., Dong, S. & Arai, N. (2009). Comparison of stationary acoustic monitoring and visual observation of finless porpoises. The Journal of the Acoustical Society of America 125, 547-553.
88. Küsel, E. T., Mellinger, D. K., Thomas, L., Marques, T. A., Moretti, D. & Ward, J. (2011). Cetacean population density estimation from single fixed sensors using passive acoustics. The Journal of the Acoustical Society of America 129, 3610-3622.
89. Kyhn, L. A., Tougaard, J., Thomas, L., Duve, L. R., Steinback, J., Amundin, M., Desportes, G. & Teilmann, J. (2012). From echolocation clicks to animal density - Acoustic sampling of harbour porpoises with static dataloggers. The Journal of the Acoustical Society of America 131, 550-560.
90. Laake, J. L. & Borchers, D. L. (2004). Methods for incomplete detection at distance zero. In Advanced Distance Sampling (eds S. T. Buckland, D. R. Anderson, K. P. Burnham, J. L. Laake, D. L. Borchers and L. Thomas ), pp. 108-180. Oxford University Press, Oxford.
91. Leaper, R., Gillespie, D. & Papastavrou, V. (2000). Results of passive acoustic surveys for odontocetes in the Southern Ocean. Journal of Cetacean Research and Management 2, 187-196.
92. Lewis, T., Gillespie, D., Lacey, C., Matthews, J., Danbolt, M., Leaper, R., McLanaghan, R. & Moscrop, A. (2007). Sperm whale abundance estimates from acoustic surveys of the Ionian Sea and Straits of Sicily in 2003. Journal of the Marine Biological Association of the United Kingdom 87, 353-357.
93. Li, S., Akamatsu, T., Wang, D. & Wang, K. (2009). Localization and tracking of phonating finless porpoises using towed stereo acoustic data-loggers. The Journal of the Acoustical Society of America 126, 468-475.
94. Link, W. A. (2003). Nonidentifiability of population size from capture-recapture data with heterogeneous detection probabilities. Biometrics 59, 1123-1130.
95. Lowe, S. & Skelton, P. (2008). First record of sound production by a South African minnow, Pseudobarbus burchelli (Teleostei: Cyprinidae), the Breede River redfin. African Journal of Aquatic Science 33, 287-289.
96. Luczkovich, J. J., Mann, D. A. & Rountree, R. A. (2008). Passive acoustics as a tool in fisheries science. Transactions of the American Fisheries Society 137, 533-541.
97. Manly, B. F. J. (2007). Randomization, Bootstrap and Monte Carlo Methods in Biology. Chapman & Hall/CRC, Boca Raton.
98. Mann, D. A., Hawkins, A. D. & Jech, J. M. (2010). Active and passive acoustics to locate and study fish. In Fish Bioacoustics (eds J. F. Webb, R. R. Fay and A. N. Popper ), pp. 279-309. Springer, New York.
99. Marques, F. F. C. & Buckland, S. T. (2003). Incorporating covariates into standard line transect analyses. Biometrics 59, 924-935.
100. Marques, T. A. (2004). Predicting and correcting bias caused by measurement error in line transect sampling using multiplicative error models. Biometrics 60, 757-763.
101. Marques, T. A., Buckland, S. T., Borchers, D. L., Tosh, D. & McDonald, R. A. (2010). Point transect sampling along linear features. Biometrics 66, 1247-1255.
102. Marques, T. A., Munger, L., Thomas, L., Wiggins, S. & Hildebrand, J. A. (2011). Estimating North Pacific right whale (Eubalaena japonica) density using passive acoustic cue counting. Endangered Species Research 13, 163-172.
103. Marques, T. A., Thomas, L., Fancy, S. G. & Buckland, S. T. (2007). Improving estimates of bird density using multiple covariate distance sampling. The Auk 124, 1229-1243.
104. Marques, T. A., Thomas, L., Martin, S. W., Mellinger, D. K., Jarvis, S., Morrissey, R. P., Ciminello, C.-A. & DiMarzio, N. (2012). Spatially explicit capture recapture methods to estimate minke whale abundance from data collected at bottom mounted hydrophones. Journal of Ornithology 152, 445-455.
105. Marques, T. A., Thomas, L., Ward, J., DiMarzio, N. & Tyack, P. L. (2009). Estimating cetacean population density using fixed passive acoustic sensors: an example with Blainville's beaked whales. The Journal of the Acoustical Society of America 125, 1982-1994.
106. Martin, S. W., Marques, T. A., Thomas, L., Morrissey, R. P., Jarvis, S., DiMarzio, N., Moretti, D. & Mellinger, D. K. (in press). Estimating minke whale (Balaenoptera acutorostrata) boing sound density using passive acoustic sensors. Marine Mammal Science (doi: 10.1111/j.1748-7692.2011.00561.x).
107. McCauley, R. D. & Jenner, C. K. (2010). Migratory patterns and estimated population size of pygmy blue whales (Balaenoptera musculus brevicauda) traversing the Western Australian coast based on passive acoustics. IWC SC/62/SH26.
108. McClintock, B. T., Bailey, L. L., Pollock, K. H. & Simons, T. R. (2010). Experimental investigation of observation error in anuran call surveys. Journal of Wildlife Management 74, 1882-1893.
109. McDonald, M. A. (2004). DIFAR hydrophones applied to whale research. Canadian Acoustics 32, 155-160.
110. McDonald, M. A. & Fox, C. G. (1999). Passive acoustic methods applied to fin whale population density estimation. The Journal of the Acoustical Society of America 105, 2643-2651.
111. McDonald, M. A., Hildebrand, J. A., Wiggins, S. M., Johnston, D. W. & Polovina, J. J. (2009). An acoustic survey of beaked whales at Cross Seamount near Hawaii. The Journal of the Acoustical Society of America 125, 624-627.
112. Mellinger, D. K. (2001). Ishmael 1.0 user's guide. Technical Report OAR-PMEL-120. NOAA/PMEL, Seattle, 30 pp.
113. Mellinger, D. K. & Barlow, J. P. (2003). Future directions for acoustic marine mammal surveys: stock assessment and habitat use. Report of a Workshop held in La Jolla, CA, 20- 22 November 2002. NOAA OAR Special Report NOAA/PMEL Contribution No. 2557. NOAA/PMEL, Seattle.
114. Mellinger, D. K. & Clark, C. W. (2000). Recognizing transient low-frequency whale sounds by spectrogram correlation. The Journal of the Acoustical Society of America 107, 3518-3529.
115. Mellinger, D. K., Küsel, E., Thomas, L. & Marques, T. A. (2009). Taming the Jez monster: Estimating fin whale spatial density using acoustic propagation modeling. The Journal of the Acoustical Society of America 126, 2229(A).
116. Mellinger, D. K., Stafford, K. M., Moore, S. E., Dziak, R. P. & Matsumoto, H. (2007). An overview of fixed passive acoustic observation methods for cetaceans. Oceanography 20, 36-45.
117. Mennill, D. J., Burt, J. M., Fristrup, K. M. & Vehrencamp, S. L. (2006). Accuracy of an acoustic location system for monitoring the position of duetting songbirds in tropical forest. The Journal of the Acoustical Society of America 119, 2832-2839.
118. Moore, S. E., Howe, B. M., Stafford, K. M. & Boyd, M. L. (2007). Including whale call detection in standard ocean measurements: application of acoustic seagliders. Marine Technology Society Journal 41, 53-57.
119. Moretti, D., Marques, T. A., Thomas, L., DiMarzio, N., Dilley, A., Morrissey, R., McCarthy, E., Ward, J. & Jarvis, S. (2010). A dive counting density estimation method for Blainville's beaked whale (Mesoplodon densirostris) using a bottom-mounted hydrophone field as applied to a Mid-Frequency Active (MFA) sonar operation. Applied Acoustics 71, 1036-1042.
120. Multi-Électronique (2011). AURAL M-2. Available at http://www.multi-electronique.com/pages/auralm2en.htm Accessed 27.2.2011.
121. Munger, L. M., Wiggins, S. M. & Hildebrand, J. A. (2011). Right whale "up-call" source levels and propagation distance on the southeastern Bering Sea shelf. The Journal of the Acoustical Society of America 129, 4047-4054.
122. Nowacek, D. P., Thorne, L. H., Johnston, D. W. & Tyack, P. L. (2007). Responses of cetaceans to anthropogenic noise. Mammal Review 37, 81-115.
123. O'Farrell, M. J. & Gannon, W. L. (1999). A comparison of acoustic versus capture techniques for the inventory of bats. Journal of Mammalogy 80, 24-30.
124. Oleson, E. M., Calambokidis, J., Barlow, J. & Hildebrand, J. A. (2007). Blue whale visual and acoustic encounter rates in the Southern California Bight. Marine Mammal Science 23, 574-597.
125. Parsons, S. & Jones, G. (2000). Acoustic identification of twelve species of echolocating bat by discriminant function analysis and artificial neural networks. Journal of Experimental Biology 203, 2641-2656.
126. Parsons, M. J., McCauley, R. D., Mackie, M. C., Siwabessy, P. & Duncan, A. J. (2009). Localization of individual mulloway (Argyrosomus japonicus) within a spawning aggregation and their behaviour throughout a diel spawning period. ICES Journal of Marine Science 66, 1007-1014.
127. Pavan, G., Adam, O. & Thomas, L. (2010). Proceedings of the 4th international workshop on detection, classification and localization of marine mammals using passive acoustics and 1st international workshop on density estimation of marine mammals using passive acoustics, University of Pavia, Collegio Cairoli, Italy, September 2009, 10-13. Applied Acoustics 71, 991-993.
128. Payne, K. B., Thompson, M. & Kramer, L. (2003). Elephant calling patterns as indicators of group size and composition: the basis for an acoustic monitoring system. African Journal of Ecology 41, 99-107.
129. Penteriani, V., Gallardo, M. & Cazassus, H. (2002). Conspecific density biases passive auditory surveys. Journal of Field Ornithology 73, 387-391.
130. Powell, L. A. (2007). Approximating variance of demographic parameters using the delta method: a reference for avian biologists. The Condor 109, 949-954.
131. Rankin, S. & Barlow, J. (2005). Source of the North Pacific "boing" sound attributed to minke whales. The Journal of the Acoustical Society of America 118, 3346-3351.
132. Rebull, O. G., Cusí, J. D., Fernández, M. R. & Muset, J. G. (2006). Tracking fin whale calls offshore the Galicia Margin, North East Atlantic Ocean. The Journal of the Acoustical Society of America 120, 2077-2085.
133. Risch, D., Corkeron, P. J., Ellison, W. T. & Van Parijs, S. M. (2012). Changes in humpback whale song occurrence in response to an acoustic source 200 km away. PLoS ONE 7, e29741.
134. Royle, J. A. (2004). N-Mixture models for estimating population size from spatially replicated counts. Biometrics 60, 108-115.
135. Royle, J. A. & Link, W. A. (2005). A general class of multinomial mixture models for anuran calling survey data. Ecology 86, 2505-2512.
136. Royle, J. A. & Nichols, J. D. (2003). Estimating abundance from repeated presence-absence data or point counts. Ecology 84, 777-790.
137. Royle, J. A. & Young, K. V. (2008). A hierarchical model for spatial capture-recapture data. Ecology 89, 2281-2289.
138. Russo, D. & Jones, G. (2003). Use of foraging habitats by bats in a Mediterranean area determined by acoustic surveys: conservation implications. Ecography 26, 197-209.
139. SCANS-II (2008). Small Cetaceans in the European Atlantic and North Sea. Final report to the European Commission on project LIFE04NAT/GB/000245. Available at http://biology.st-andrews.ac.uk/scans2. Accessed 12.11.2012.
140. Schwarz, C. J. & Seber, G. A. F. (1999). Estimating animal abundance: review III. Statistical Science 14, 427-456.
141. Seber, G. A. F. (1982). The Estimation of Animal Abundance. Second Edition. Griffin, London.
142. Seber, G. A. F. (1986). A review of estimating animal abundance. Biometrics 42, 267-292.
143. Seber, G. A. F. (1992). A review of estimating animal abundance II. International Statistical Review 60, 129-166.
144. Shirose, L. J., Bishop, C. A., Green, D. M., MacDonald, C. J., Brooks, R. J. & Helferty, N. J. (1997). Validation tests of an amphibian call count survey technique in Ontario, Canada. Herpetologica 53, 312-320.
145. Širović, A., Cutter, G. R., Butler, J. L. & Demer, D. A. (2009). Rockfish sounds and their potential use for population monitoring in the Southern California Bight. ICES Journal of Marine Science 66, 981-990.
146. Širović, A., Hildebrand, J. & Wiggins, S. (2007). Blue and fin whale call source levels and propagation range in the Southern Ocean. The Journal of the Acoustical Society of America 122, 1208-1215.
147. Sousa-Lima, R., Paglia, A. & Fonseca, G. (2002). Signature information and individual recognition in the isolation calls of Amazonian manatees, Trichechus inunguis (Mammalia: Sirenia). Animal Behaviour 63, 301-310.
148. Southall, B. L. & Nowacek, D. P. (2009). Acoustics in marine ecology: innovation in technology expands the use of sound in ocean science. Marine Ecology Progress Series 395, 1-3.
149. Stafford, K. M., Citta, J. J., Moore, S. E., Daher, M. A. & George, J. E. (2009). Environmental correlates of blue and fin whale call detections in the North Pacific Ocean from 1997 to 2002. Marine Ecology Progress Series 395, 37-53.
150. Stafford, K., Mellinger, D., Moore, S. & Fox, C. (2007). Seasonal variability and detection range modeling of baleen whale calls in the Gulf of Alaska, 1999-2002. The Journal of the Acoustical Society of America 12, 3378-3390.
151. Thompson, M. E., Schwager, S. J. & Payne, K. B. (2010). Heard but not seen: an acoustic survey of the African forest elephant population at Kakum Conservation Area, Ghana. African Journal of Ecology 48, 224-231.
152. Thompson, M. E., Schwager, S. J., Payne, K. B. & Turkalo, A. K. (2009). Acoustic estimation of wildlife abundance: methodology for vocal mammals in forested habitats. African Journal of Ecology 48, 654-661.
153. Tyack, P. L., Johnson, M., Soto, N. A., Sturlese, A. & Madsen, P. T. (2006). Extreme diving of beaked whales. Journal of Experimental Biology 209, 4238-4253.
154. Van Opzeeland, I., Van Parijs, S., Bornemann, H., Frickenhaus, S., Kindermann, L., Klinck, H., Plötz, J. & Boebel, O. (2010). Acoustic ecology of Antarctic pinnipeds. Marine Ecology Progress Series 414, 267-291.
155. Van Parijs, S. M. & Clark, C. W. (2006). Long-term mating tactics in an aquatic-mating pinniped, the bearded seal, Erignathus barbatus. Animal Behaviour 72, 1269-1277.
156. Van Parijs, S. M., Clark, C. W., Sousa-Lima, R. S., Parks, S. E., Rankin, S., Risch, D. & Van Opzeeland, I. C. (2009). Management and research applications of real-time and archival passive acoustic sensors over varying temporal and spatial scales. Marine Ecology Progress Series 395, 21-36.
157. Van Parijs, S. M., Hastie, G. D. & Thompson, P. M. (1999). Geographical variation in temporal and spatial vocalization patterns of male harbour seals in the mating season. Animal Behaviour 58, 1231-1239.
158. Van Parijs, S. M., Smith, J. & Corkeron, P. J. (2002). Using calls to estimate the abundance of inshore dolphins: a case study with Pacific humpback dolphins Sousa chinensis. Journal of Applied Ecology 39, 853-864.
159. Veirs, V. & Veirs, S. (2005). One year of background underwater sound levels in Haro Strait, Puget Sound. The Journal of the Acoustical Society of America 117, 2577-2578.
160. Ward, J., Jarvis, S., Moretti, D., Morrissey, R., DiMarzio, N., Thomas, L. & Marques, T. A. (2011). Beaked whale (Mesoplodon densirostris) passive acoustic detection with increasing ambient noise. The Journal of the Acoustical Society of America 129, 662-669.
161. Ward, J., Morrissey, R., Moretti, D., DiMarzio, N., Jarvis, S., Johnson, M., Tyack, P. & White, C. (2008). Passive acoustic detection and localization of Mesoplodon densirostris (Blainville's beaked whale) vocalizations using distributed bottom-mounted hydrophones in conjunction with a digital tag (DTAG) recording. Canadian Acoustics 36, 60-66.
162. Ward, J. A., Thomas, L., Jarvis, S., Baggenstoss, P., DiMarzio, N., Moretti, D., Morrissey, R., Marques, T. A., Dunn, C., Claridge, D., Hartvig, E. & Tyack, P. (2012). Passive acoustic density estimation of sperm whales in the Tongue of the Ocean, Bahamas. Marine Mammal Science 28, E444-E455.
163. Wentz, G. M. (1964). Curious noises and the sonic environment in the ocean. In Marine Bio-Acoustics (ed. W. N. Tavolga ), pp. 101-119. Pergamon, New York.
164. Whitehead, H. (2009). Estimating abundance from one-dimensional passive acoustic surveys. Journal of Wildlife Management 73, 1000-1009.
165. Wiggins, S. (2003). Autonomous Acoustic Recording Packages (ARPs) for long-term monitoring of whale sounds. Marine Technology Society Journal 37(2), 13-22.
166. Wiggins, S. M., McDonald, M. A. & Hildebrand, J. A. (2012). Beaked whale and dolphin tracking using a multichannel autonomous acoustic recorder. The Journal of the Acoustical Society of America 131, 156-163.
167. Wildlife Acoustics, Inc (2012). "Acoustic monitoring" and "Marine monitoring". Available at http://www.wildlifeacoustics.com/products/acoustic-monitoring and .../marine-monitoring Accessed 10.01.2012.
168. Willcox, S., Manley, J. & Wiggins, S. (2009). The Wave Glider, an energy harvesting autonomous surface vessel. Sea Technology 49, 29-31.
169. Williams, B. K., Nichols, J. D. & Conroy, M. J. (2002). Analysis and Management of Animal Populations. Academic Press, San Diego.
170. Wood, J. D. (2010). Marine mammal species conservation: a review of developments in the uses of acoustics. Journal of International Wildlife Law and Policy 13, 311-325.
171. Zhang, M., Crocker, R. L., Mankin, R. W., Flanders, K. L. & Hubbard, J. L. B. (2003). Acoustic estimation of infestations and population densities of white grubs (Coleoptera: Scarabaeidae) in turfgrass. Journal of Economic Entomology 96, 1770-1779.
172. Zimmer, W. M. X. (2011). Passive Acoustic Monitoring of Cetaceans. Cambridge University Press, Cambridge.
173. Zimmer, W. M., Harwood, J., Tyack, P. L., Johnson, M. P. & Madsen, P. T. (2008). Passive acoustic detection of deep diving beaked whales. The Journal of the Acoustical Society of America 124, 2823-2832.
174. Zwolinski, J., Fernandes, P. G., Marques, V. & Stratoudakis, Y. (2009). Estimating fish abundance from acoustic surveys: calculating variance due to acoustic backscatter and length distribution error. Canadian Journal of Fisheries and Aquatic Sciences 66, 2081-2095.