Stokes vector based polarization resolved second harmonic microscopy of starch granules

Biomedical Optics Express

Volumn 4, Issue 4, 2013, Pages 538-547

  Mazumder, Nirmal ^a   Qiu, Jianjun ^a   Foreman, Matthew R ^b,c   Romero, Carlos Macías ^b   Török, Peter ^b   Kao, Fu Jen ^a  

^a NATIONAL YANG MING UNIVERSITY   (Taiwan)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

^c MAX PLANCK INSTITUTE FOR THE SCIENCE OF LIGHT   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; GRANULATION; HARMONIC GENERATION; PHOTONIC CRYSTALS; STARCH;

DEGREE OF CIRCULAR POLARIZATION; DEGREE OF LINEAR POLARIZATION; DEGREE OF POLARIZATION; MEASUREMENT AND ANALYSIS; NATURAL PHOTONIC CRYSTALS; POLARIZATION PARAMETERS; SECOND HARMONIC SIGNALS; SECOND-HARMONIC MICROSCOPY;

POLARIZATION;

AMYLOPECTIN; STARCH;

ALGORITHM; ANISOTROPY; ARTICLE; CALIBRATION; CHIRALITY; CRYSTAL STRUCTURE; ILLUMINATION; IMAGE PROCESSING; LASER; POLARIMETER; POLARIZATION MICROSCOPY; SIGNAL NOISE RATIO;

EID: 84875759464     PISSN: None     EISSN: 21567085     Source Type: Journal    
DOI: 10.1364/BOE.4.000538     Document Type: Article

References (34)

1. P. J. Campagnola and L. M. Loew, "Second-harmonic imaging microscopy for visualizing biomolecular arrays in cells, tissues and organisms," Nat. Biotechnol. 21(11), 1356-1360 (2003).
2. W. Denk, J. H. Strickler, and W. W. Webb, "Two-photon laser scanning fluorescence microscopy," Science 248(4951), 73-76 (1990).
3. F. Lu, W. Zheng, and Z. Huang, "Heterodyne polarization coherent anti-Stokes Raman scattering microscopy," Appl. Phys. Lett. 92(12), 123901 (2008).
4. S. V. Plotnikov, A. C. Millard, P. J. Campagnola, and W. A. Mohler, "Characterization of the myosin-based source for second-harmonic generation from muscle sarcomeres," Biophys. J. 90(2), 693-703 (2006).
5. P. J. Campagnola, "Second harmonic generation imaging microscopy: applications to diseases diagnostics," Anal. Chem. 83(9), 3224-3231 (2011).
6. X. Chen, O. Nadiarynkh, S. Plotnikov, and P. J. Campagnola, "Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure," Nat. Protoc. 7(4), 654-669 (2012).
7. R. W. Boyd, Nonlinear Optics (Academic Press, 1992).
8. S. Psilodimitrakopoulos, S. I. C. O. Santos, I. Amat-Roldan, A. K. N. Thayil, D. Artigas, and P. Loza-Alvarez, "In vivo, pixel-resolution mapping of thick filaments' orientation in nonfibrilar muscle using polarizationsensitive second harmonic generation microscopy," J. Biomed. Opt. 14(1), 014001 (2009).
9. G. Cox, N. Moreno, and J. Feijó, "Second-harmonic imaging of plant polysaccharides," J. Biomed. Opt. 10(2), 024013 (2005).
10. A. D. Slepkov, A. Ridsdale, A. F. Pegoraro, D. J. Moffatt, and A. Stolow, "Multimodal CARS microscopy of structured carbohydrate biopolymers," Biomed. Opt. Express 1(5), 1347-1357 (2010).
11. Z. Y. Zhuo, C. S. Liao, C. H. Huang, J. Y. Yu, Y. Y. Tzeng, W. Lo, C. Y. Dong, H. C. Chui, Y. C. Huang, H. M. Lai, and S. W. Chu, "Second harmonic generation imaging-a new method for unraveling molecular information of starch," J. Struct. Biol. 171(1), 88-94 (2010).
12. S. Psilodimitrakopoulos, I. Amat-Roldan, P. Loza-Alvarez, and D. Artigas, "Estimating the helical pitch angle of amylopectin in starch using polarization second harmonic generation microscopy," J. Opt. 12(8), 084007 (2010).
13. S. Psilodimitrakopoulos, I. Amat-Roldan, P. Loza-Alvarez, and D. Artigas, "Effect of molecular organization on the image histograms of polarization SHG microscopy," Biomed. Opt. Express 3(10), 2681-2693 (2012).
14. R. L. Whistler, J. N. Bemiller, and E. F. Parschall, Starch: Chemistry and Technology (Academic Press, 1984), pp. 183-247.
15. D. J. Gallant, B. Bouchet, A. Buléon, and S. Pérez, "Physical characteristics of starch granules and susceptibility to enzymatic degradation," Eur. J. Clin. Nutr. 46(Suppl 2), S3-S16 (1992).
16. D. J. Gallant, B. Bouchet, and P. M. Baldwin, "Microscopy of starch: evidence of a new level of granule organization," Carbohydr. Polym. 32(3-4), 177-191 (1997).
17. G. T. Oostergetel and E. F. J. van Bruggen, "On the origin of a low angle spacing in starch," Starch 41(9), 331-335 (1989).
18. G. Mizutani, Y. Sonoda, H. Sano, M. Sakamoto, T. Takahashi, and S. Ushioda, "Detection of starch granules in a living plant by optical second harmonic microscopy," J. Lumin. 87-89, 824-826 (2000).
19. R. Carriles, K. E. Sheetz, E. E. Hoover, J. A. Squier, and V. Barzda, "Simultaneous multifocal, multiphoton, photon counting microscopy," Opt. Express 16(14), 10364-10371 (2008).
20. K. N. Anisha Thayil, E. J. Gualda, S. Psilodimitrakopoulos, I. G. Cormack, I. Amat-Roldán, M. Mathew, D. Artigas, and P. Loza-Alvarez, "Starch-based backwards SHG for in situ MEFISTO pulse characterization in multiphoton microscopy," J. Microsc. 230(1), 70-75 (2008).
21. M. Wang, K. M. Reiser, and A. Knoesen, "Spectral moment invariant analysis of disorder in polarizationmodulated second-harmonic-generation images obtained from collagen assemblies," J. Opt. Soc. Am. A 24(11), 3573-3586 (2007).
22. M. R. Foreman, C. Macias Romero, and P. Török, "A priori information and optimisation in polarimetry," Opt. Express 16(19), 15212-15227 (2008).
23. R. M. A. Azzam, "Arrangement of four photodetectors for measuring the state of polarization of light," Opt. Lett. 10(7), 309-311 (1985).
24. P. A. Letnes, I. S. Nerbø, L. M. S. Aas, P. G. Ellingsen, and M. Kildemo, "Fast and optimal broad-band Stokes/Mueller polarimeter design by the use of a genetic algorithm," Opt. Express 18(22), 23095-23103 (2010).
25. C. W. Sun, C. C. Yang, and Y. W. Kiang, "Optical imaging based on time-resolved Stokes vectors in filamentous tissues," Appl. Opt. 42(4), 750-754 (2003).
26. V. Sankaran Jr., J. T. Walsh Jr., and D. J. Maitland, "Comparative study of polarized light propagation in biologic tissues," J. Biomed. Opt. 7(3), 300-306 (2002).
27. V. K. Valev, A. V. Silhanek, N. Smisdom, B. De Clercq, W. Gillijns, O. A. Aktsipetrov, M. Ameloot, V. V. Moshchalkov, and T. Verbiest, "Linearly polarized second harmonic generation microscopy reveals chirality," Opt. Express 18(8), 8286-8293 (2010).
28. T. Verbiest, M. Kauranen, J. J. Maki, M. N. Teerenstra, A. J. Schouten, R. J. M. Nolte, and A. Persoons, "Linearly polarized probes of surface chirality," J. Chem. Phys. 103(18), 8296-8298 (1995).
29. N. Mazumder, J. Qiu, M. R. Foreman, C. M. Romero, C.-W. Hu, H.-R. Tsai, P. Török, and F.-J. Kao, "Polarization-resolved second harmonic generation microscopy with a four-channel Stokes-polarimeter," Opt. Express 20(13), 14090-14099 (2012).
30. E. Collett, Polarized Light: Fundamentals and Applications (Marcel Dekker, 1993).
31. J. G. Webster, "Polarization measurement," in The Measurement, Instrumentation and Sensors Handbook (CRC Press, 1998), Chap. 60.
32. J. Qiu (Modern Optics Laboratory, National Yang-Ming University, 155 Li-Nong St., Taipei 112, Taiwan) and N. Mazumder are preparing a manuscript to be called "Stokes vector formalism based nonlinear optical microscopy."
33. A. Buléon, P. Colonna, V. Planchot, and S. Ball, "Starch granules: structure and biosynthesis," Int. J. Biol. Macromol. 23(2), 85-112 (1998).
34. T. A. Waigh, K. L. Kato, A. M. Donald, M. J. Gidley, C. J. Clarke, and C. Riekel, "Side-chain liquid-crystalline model for starch," Starch 52(12), 450-460 (2000).