Efficient and fine mapping of RMES1 conferring resistance to sorghum aphid Melanaphis sacchari

Molecular Breeding

Volumn 31, Issue 4, 2013, Pages 777-784

  Wang, Faming ^a   Zhao, Songmin ^b   Han, Yonghua ^a   Shao, Yutao ^a,c   Dong, Zhenying ^a   Gao, Yang ^a   Zhang, Kunpu ^a   Liu, Xin ^a   Li, Dawei ^b   Chang, Jinhua ^d   Wang, Daowen ^a  

^a INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^d AGRICULTURAL UNIVERSITY OF HEBEI   (China)

Author keywords

Aphid; Fine mapping; Melanaphis sacchari; Molecular marker; RMES1; Sorghum

Indexed keywords

GENES;

APHID; DOMINANT GENES; FINE MAPPING; GENETIC POPULATION; GRAIN SORGHUM; MELANAPHI SACCHARI; MOLECULAR MARKER; RMES1; SORGHUM; SORGHUM BICOLOR (L.) MOENCH;

MAPPING;

APHIDIDAE; MELANAPHIS SACCHARI; SORGHUM BICOLOR; SORGHUM BICOLOR BICOLOR;

EID: 84875734842     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-012-9832-6     Document Type: Article

References (33)

1. Apotikar DB, Venkateswarlu D, Ghorade RB, Wadaskar RM, Patil JV, Kulwal PL (2011) Mapping of shoot fly tolerance loci in sorghum using SSR markers. J Genet 90: 59-66.
2. Blackman RL, Eastop VF (2000) Aphids on the world crop pests: an identification and information guide. Wiley, London, pp 1-8.
3. Bouchet S, Pot D, Deu M, Rami JF, Billot C, Perrier X, Rivallan R, Gardes L, Xia L, Wenzl P, Kilian A, Glaszmann JC (2012) Genetic structure, linkage disequilibrium and signature of selection in sorghum: lessons from physically anchored DArT markers. PLoS ONE 3: 1-15.
4. Carpita NC, McCann MC (2008) Maize and sorghum: genetic resources for bioenergy grasses. Trends Plant Sci 13: 415-520.
5. Chang JH, Xia XY, Zhang L, Li RG, Liu GQ, Luo YW (2006) Analysis of the resistance gene to the sorghum aphid, Melanaphis sacchari, with SSR marker in Sorghum bicolor. Acta Pratacult Sin 115: 113-118 (in Chinese).
6. Chang JH, Cui JH, Xue W, Zhang QW (2012) Identification of molecular markers for an aphid resistance gene in sorghum and selective efficiency using these markers. J Integr Agric 11: 1086-1092.
7. 2 tests for goodness-of-fit. Ann Math Stat 25: 579-586.
8. Dugas DV, Monaco MK, Olsen A, Klein RR, Kumari S, Ware D, Klein PE (2011) Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid. BMC Genomics 12: 514.
9. Eddleman BR, Chang CC, McCarl BA (1999) Economic benefits from grain sorghum variety improvement in the United States. In: Wiseman BR, Webster JA (eds) Economic, environmental, and social benefits of resistance in field crops. Thomas Say Publications, Maryland, pp 35-37.
10. Jackson DR, Arthur MF, Davis M, Kresovich S, Lawhon WT, Lipinsky ES, Price M, Rudolph A (2008) Research report on development of sweet sorghum as an energy crop. Battelle Press, Columbus, pp 277-290.
11. Kawahigashi H, Kasuga S, Ando T, Kanamori H, Wu J, Yonemaru J, Sazuka T, Matsumoto T (2011) Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorghum. Theor Appl Genet 123: 131-142.
12. Kindler SD, Elliott NC, Royer TA, Giles KL, Tao F, Fuentes R (2002) Effect of greenbugs on winter wheat yield. J Econ Entomol 95: 89-95.
13. Li ML, Yuyama N, Luo L, Hirata M, Cai HW (2009) In silico mapping of 1758 new SSR markers developed from public genomic sequences for sorghum. Mol Breed 24: 41-47.
14. Lin ZW, Li XR, Shannon LM, Yeh CT, Wang ML, Bai GH, Peng Z, Li JR, Tric HN, Clemente TE, Doebley J, Schnable PS, Tuinstra MR, Tesso TT, White F, Yu JM (2012) Parallel domestication of the Shattering1 genes in cereals. Nat Genet 44: 720-724.
15. Lincoln SE, Daly MJ, Lander ES (1993) Constructing linkage maps with MapMaker/Exp version 3. 0. A tutorial reference manual, 3rd edn. Whitehead Institute for Medical Research, Cambridge.
16. Lu QS, Dahlberg JA (2001) Chinese sorghum genetic resources. Econ Bot 55: 401-425.
17. Mace ES, Rami JF, Bouchet S, Klein PE, Klein RR, Kilian A, Wenzl P, Xia L, Halloran K, Jordan DR (2009) A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers. BMC Plant Biol 9: 13.
18. Magalhaes JV, Liu J, Guimaraes CT, Lana UGP, Alves VM, Wang YH, Schaffert RE, Hoekenga OA, Pineros MA, Shaff JE, Klein PE, Carneiro NP, Coelho CM, Trick HN, Kochian LV (2007) A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nat Genet 39: 1156-1161.
19. Palmer GH (1992) Sorghum-food, beverage and brewing potentials. Process Biochem 27: 145-153.
20. Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman WD, Westhoff P, Mayer KFX, Messing J, Rokhsar DS (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
21. Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant JP, Sourdille P, Balfourier F, Le Paslier MC, Chauveau A, Cakir M, Gandon B, Feuillet C (2010) Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnol J 8: 196-210.
22. Punnuri S, Huang Y, Steets J, Wu Y (2012) Developing new markers and QTL mapping for greenbug resistance in sorghum [Sorghum bicolor (L.) Moench]. Euphytica. doi: 10. 1007/s10681-012-0755-4.
23. Saghai-Maroof MA, Soliman KM, Jorgesen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley Mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
24. Sharma HC (1993) Host-plant resistance to insects in sorghum and its role in integrated pest management. Crop Prot 12: 11-34.
25. Singh BU, Padmaja PG, Seetharama N (2004) Biology and management of the sugarcane aphid, Melanaphis sacchari (Zehntner) (Homoptera: Aphididae), in sorghum: a review. Crop Prot 23: 739-755.
26. Teetes GL (1980) Breeding sorghums resistant to insects. In: Maxwell FG, Jennings PR (eds) Breeding plants resistant to insects. Wiley, New York, pp 457-485.
27. van den Berg J (2002) Status of resistance of sorghum hybrids to the aphid, Melanaphis sacchari (Zehntner) (Homoptera: Aphididae). J Plant Soil (South Africa) 19: 151-155.
28. Vermerris W (2011) Survey of genomics approaches to improve bioenergy traits in maize, sorghum and sugarcane. J Integr Plant Biol 53: 105-119.
29. Voorrips RE (2002) MapChart, software for the graphical presentation of linkage maps and QTLs. J Hered 93: 77-78.
30. You FM, Wanjugi H, Huo NX, Lazo GR, Luo MC, Anderson OD, Dvorak J, Gu YQ (2010) RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development. Nucleic Acids Res 38: 313-320.
31. Young WR, Teetes GL (1977) Sorghum entomology. Annu Rev Entomol 22: 193-218.
32. Zheng LY, Guo XS, He B, Sun LJ, Peng Y, Dong SS, Liu TF, Jiang S, Ramachandran S, Liu CM, Jing HC (2011) Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor). Genome Biol 12: R114.
33. Zou G, Zhai G, Feng Q, Yan S, Wang A, Zhao Q, Shao J, Zhang Z, Zou J, Han B, Tao YZ (2012) Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods. J Exp Bot. doi: 10. 1093/jxb/ers205.