-
1
-
-
0035142211
-
Survey of transposable elements from rice genomic sequences
-
Turcotte,K., Srinivasan,S. and Bureau,T. (2001) Survey of transposable elements from rice genomic sequences. Plant J., 25, 169-179.
-
(2001)
Plant J
, vol.25
, pp. 169-179
-
-
Turcotte, K.1
Srinivasan, S.2
Bureau, T.3
-
2
-
-
77949918995
-
Triticeae genome structure and evolution
-
Feuillet,C. and Muehlbauer,G.J. (eds) Springer, New York, USA
-
Dvorak,J. (2009) Triticeae genome structure and evolution. In Feuillet,C. and Muehlbauer,G.J. (eds), Genetics and Genomics of the Triticeae. Springer, New York, USA, pp. 685-711.
-
(2009)
Genetics and Genomics of the Triticeae
, pp. 685-711
-
-
Dvorak, J.1
-
3
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker,T., Sabot,F., Hua-Van,A., Bennetzen,J.L., Capy,P., Chalhoub,B., Flavell,A., Leroy,P., Morgante,M., Panaud,O. et al. (2007) A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet., 8, 973-982.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
-
4
-
-
33750030513
-
Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B
-
Paux,E., Roger,D., Badaeva,E., Gay,G., Bernard,M., Sourdille,P. and Feuillet,C. (2006) Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J., 48, 463-474.
-
(2006)
Plant J
, vol.48
, pp. 463-474
-
-
Paux, E.1
Roger, D.2
Badaeva, E.3
Gay, G.4
Bernard, M.5
Sourdille, P.6
Feuillet, C.7
-
5
-
-
67650338287
-
Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat
-
Wanjugi,H., Coleman-Derr,D., Huo,N., Kianian,S.F., Luo,M.C., Wu,J., Anderson,O. and Gu,Y.Q. (2009) Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat. Genome, 52, 576-587.
-
(2009)
Genome
, vol.52
, pp. 576-587
-
-
Wanjugi, H.1
Coleman-Derr, D.2
Huo, N.3
Kianian, S.F.4
Luo, M.C.5
Wu, J.6
Anderson, O.7
Gu, Y.Q.8
-
6
-
-
73949088815
-
Insertion site-based polymorphism markers open new perspectives for genome saturation and markerassisted selection in wheat
-
Paux,E., Faure,S., Choulet,F., Roger,D., Gauthier,V., Martinant,J.P., Sourdille,P., Balfourier,F., Le Paslier,M.C., Chauveau,A. et al. (2010) Insertion site-based polymorphism markers open new perspectives for genome saturation and markerassisted selection in wheat. Plant Biotechnol. J., 8, 196-210.
-
(2010)
Plant Biotechnol. J.
, vol.8
, pp. 196-210
-
-
Paux, E.1
Faure, S.2
Choulet, F.3
Roger, D.4
Gauthier, V.5
Martinant, J.P.6
Sourdille, P.7
Balfourier, F.8
Le Paslier, M.C.9
Chauveau, A.10
-
7
-
-
0030991387
-
Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
-
Waugh,R., McLean,K., Flavell,A.J., Pearce,S.R., Kumar,A., Thomas,B.B. and Powell,W. (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol. Gen. Genet., 253, 687-694.
-
(1997)
Mol. Gen. Genet.
, vol.253
, pp. 687-694
-
-
Waugh, R.1
McLean, K.2
Flavell, A.J.3
Pearce, S.R.4
Kumar, A.5
Thomas, B.B.6
Powell, W.7
-
8
-
-
34548163098
-
IRAP and REMAP for retrotransposon-based genotyping and fingerprinting
-
Kalendar,R. and Schulman,A.H. (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat. Protoc., 1, 2478-2484.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2478-2484
-
-
Kalendar, R.1
Schulman, A.H.2
-
9
-
-
0032409406
-
Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis
-
Flavell,A.J., Knox,M.R., Pearce,S.R. and Ellis,T.H. (1998) Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J., 16, 643-650.
-
(1998)
Plant J
, vol.16
, pp. 643-650
-
-
Flavell, A.J.1
Knox, M.R.2
Pearce, S.R.3
Ellis, T.H.4
-
10
-
-
33750452293
-
Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction
-
Luce,A.C., Sharma,A., Mollere,O.S., Wolfgruber,T.K., Nagaki,K., Jiang,J., Presting,G.G. and Dawe,R.K. (2006) Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction. Genetics, 174, 1057-1061.
-
(2006)
Genetics
, vol.174
, pp. 1057-1061
-
-
Luce, A.C.1
Sharma, A.2
Mollere, O.S.3
Wolfgruber, T.K.4
Nagaki, K.5
Jiang, J.6
Presting, G.G.7
Dawe, R.K.8
-
11
-
-
30044440641
-
Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat
-
Devos,K.M., Ma,J., Pontaroli,A.C., Pratt,L.H. and Bennetzen,J.L. (2005) Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat. Proc. Natl Acad. Sci. USA, 102, 19243-19248.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 19243-19248
-
-
Devos, K.M.1
Ma, J.2
Pontaroli, A.C.3
Pratt, L.H.4
Bennetzen, J.L.5
-
12
-
-
0037433054
-
LTR_STRUC: a novel search and identification program for LTR retrotransposons
-
McCarthy,E.M. and McDonald,J.F. (2003) LTR_STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics, 19, 362-367.
-
(2003)
Bioinformatics
, vol.19
, pp. 362-367
-
-
McCarthy, E.M.1
McDonald, J.F.2
-
13
-
-
34547592867
-
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
-
Xu,Z. and Wang,H. (2007) LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res., 35, W265-W268.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Xu, Z.1
Wang, H.2
-
14
-
-
0037226131
-
Automated de novo identification of repeat sequence families in sequenced genomes
-
Bao,Z. and Eddy,S.R. (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res., 12, 1269-1276.
-
(2002)
Genome Res
, vol.12
, pp. 1269-1276
-
-
Bao, Z.1
Eddy, S.R.2
-
15
-
-
77349114039
-
JunctionViewer: customizable annotation software for repeat-rich genomic regions
-
Wolfgruber,T.K. and Presting,G.G. (2010) JunctionViewer: customizable annotation software for repeat-rich genomic regions. BMC Bioinformatics, 11, 23.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 23
-
-
Wolfgruber, T.K.1
Presting, G.G.2
-
16
-
-
40549119216
-
MIPS plant genome information resources
-
Spannagl,M., Haberer,G., Ernst,R., Schoof,H. and Mayer,K.F. (2007) MIPS plant genome information resources. Methods Mol. Biol., 406, 137-159.
-
(2007)
Methods Mol. Biol.
, vol.406
, pp. 137-159
-
-
Spannagl, M.1
Haberer, G.2
Ernst, R.3
Schoof, H.4
Mayer, K.F.5
-
17
-
-
0346494835
-
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants
-
Ouyang,S. and Buell,C.R. (2004) The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res., 32, D360-D363.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Ouyang, S.1
Buell, C.R.2
-
18
-
-
46049108350
-
BatchPrimer3: a high throughput web application for PCR and sequencing primer design
-
You,F.M., Huo,N., Gu,Y.Q., Luo,M.C., Ma,Y., Hane,D., Lazo,G.R., Dvorak,J. and Anderson,O.D. (2008) BatchPrimer3: a high throughput web application for PCR and sequencing primer design. BMC Bioinformatics, 9, 253.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 253
-
-
You, F.M.1
Huo, N.2
Gu, Y.Q.3
Luo, M.C.4
Ma, Y.5
Hane, D.6
Lazo, G.R.7
Dvorak, J.8
Anderson, O.D.9
-
19
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Krawet,S. and Misener,S. (eds) Humana Press, Totowa, NJ, USA
-
Rozen,S. and Skaletsky,H.J. (2000) Primer3 on the WWW for general users and for biologist programmers. In Krawet,S. and Misener,S. (eds), Bioinformatics Methods and Protocols: Methods in Molecular Biology. Humana Press, Totowa, NJ, USA, pp. 365-386.
-
(2000)
Bioinformatics Methods and Protocols: Methods in Molecular Biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.J.2
-
20
-
-
0030920610
-
Sequence mapping by electronic PCR
-
Schuler,G.D. (1997) Sequence mapping by electronic PCR. Genome Res., 7, 541-550.
-
(1997)
Genome Res
, vol.7
, pp. 541-550
-
-
Schuler, G.D.1
-
21
-
-
3242881976
-
A web server for performing electronic PCR
-
Rotmistrovsky,K., Jang,W. and Schuler,G.D. (2004) A web server for performing electronic PCR. Nucleic Acids Res., 32, W108-W112.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Rotmistrovsky, K.1
Jang, W.2
Schuler, G.D.3
-
22
-
-
8444242268
-
Sequence composition, organization, and evolution of the core Triticeae genome
-
Li,W., Zhang,P., Fellers,J.P., Friebe,B. and Gill,B.S. (2004) Sequence composition, organization, and evolution of the core Triticeae genome. Plant J., 40, 500-511.
-
(2004)
Plant J
, vol.40
, pp. 500-511
-
-
Li, W.1
Zhang, P.2
Fellers, J.P.3
Friebe, B.4
Gill, B.S.5
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