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Volumn 94, Issue PART4, 2013, Pages 906-915

Genomic characterization of lytic Staphylococcus aureus phage GH15: Providing new clues to intron shift in phages

Author keywords

[No Author keywords available]

Indexed keywords

INTEIN; RESTRICTION ENDONUCLEASE; STRUCTURAL PROTEIN; VIRULENCE FACTOR;

EID: 84875654157     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.049197-0     Document Type: Article
Times cited : (19)

References (46)
  • 3
    • 34948860729 scopus 로고    scopus 로고
    • Causes for the intriguing presence of tRNAs in phages
    • Bailly-Bechet, M., Vergassola, M. & Rocha, E. (2007). Causes for the intriguing presence of tRNAs in phages. Genome Res 17, 1486-1495.
    • (2007) Genome Res , vol.17 , pp. 1486-1495
    • Bailly-Bechet, M.1    Vergassola, M.2    Rocha, E.3
  • 4
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • Besemer, J., Lomsadze, A. & Borodovsky, M. (2001). GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 29, 2607-2618.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 6
    • 0025367254 scopus 로고
    • Self-splicing of group I introns
    • Cech, T. R. (1990). Self-splicing of group I introns. Annu Rev Biochem 59, 543-568.
    • (1990) Annu Rev Biochem , vol.59 , pp. 543-568
    • Cech, T.R.1
  • 7
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier, B. S. & Stoddard, B. L. (2001). Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 29, 3757-3774.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 8
    • 33845982198 scopus 로고    scopus 로고
    • Characterization of intron loss events in mammals
    • Coulombe-Huntington, J. & Majewski, J. (2007). Characterization of intron loss events in mammals. Genome Res 17, 23-32.
    • (2007) Genome Res , vol.17 , pp. 23-32
    • Coulombe-Huntington, J.1    Majewski, J.2
  • 9
    • 0012636820 scopus 로고
    • Speculations on the early course of evolution
    • Darnell, J. E. & Doolittle, W. F. (1986). Speculations on the early course of evolution. Proc Natl Acad Sci U S A 83, 1271-1275.
    • (1986) Proc Natl Acad Sci U S A , vol.83 , pp. 1271-1275
    • Darnell, J.E.1    Doolittle, W.F.2
  • 10
    • 0033806414 scopus 로고    scopus 로고
    • Barriers to intron promiscuity in bacteria
    • Edgell, D. R., Belfort, M. & Shub, D. A. (2000). Barriers to intron promiscuity in bacteria. J Bacteriol 182, 5281-5289.
    • (2000) J Bacteriol , vol.182 , pp. 5281-5289
    • Edgell, D.R.1    Belfort, M.2    Shub, D.A.3
  • 11
    • 0033987383 scopus 로고    scopus 로고
    • Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages
    • Foley, S., Bruttin, A. & Brussow, H. (2000). Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages. J Virol 74, 611-618.
    • (2000) J Virol , vol.74 , pp. 611-618
    • Foley, S.1    Bruttin, A.2    Brussow, H.3
  • 12
    • 20144372744 scopus 로고    scopus 로고
    • Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
    • other authors
    • Gill, S. R., Fouts, D. E., Archer, G. L., Mongodin, E. F., Deboy, R. T., Ravel, J., Paulsen, I. T., Kolonay, J. F., Brinkac, L. & other authors (2005). Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J Bacteriol 187, 2426-2438
    • (2005) J Bacteriol , vol.187 , pp. 2426-2438
    • Gill, S.R.1    Fouts, D.E.2    Archer, G.L.3    Mongodin, E.F.4    Deboy, R.T.5    Ravel, J.6    Paulsen, I.T.7    Kolonay, J.F.8    Brinkac, L.9
  • 14
    • 48449095609 scopus 로고    scopus 로고
    • The CGView Server: A comparative genomics tool for circular genomes
    • (Web Server issue),
    • Grant, J. R. & Stothard, P. (2008). The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res 36 (Web Server issue), W181-W184.
    • (2008) Nucleic Acids Res , vol.36
    • Grant, J.R.1    Stothard, P.2
  • 15
    • 82455167964 scopus 로고    scopus 로고
    • LysGH15B, the SH3b domain of staphylococcal phage endolysin LysGH15, retains high affinity to staphylococci
    • Gu, J., Lu, R., Liu, X., Han, W., Lei, L., Gao, Y., Zhao, H., Li, Y. & Diao, Y. (2011a). LysGH15B, the SH3b domain of staphylococcal phage endolysin LysGH15, retains high affinity to staphylococci. Curr Microbiol 63, 538-542.
    • (2011) Curr Microbiol , vol.63 , pp. 538-542
    • Gu, J.1    Lu, R.2    Liu, X.3    Han, W.4    Lei, L.5    Gao, Y.6    Zhao, H.7    Li, Y.8    Diao, Y.9
  • 16
    • 78650865739 scopus 로고    scopus 로고
    • LysGH15, a novel bacteriophage lysin, protects a murine bacteremia model efficiently against lethal methicillin-resistant Staphylococcus aureus infection
    • Gu, J., Xu, W., Lei, L., Huang, J., Feng, X., Sun, C., Du, C., Zuo, J., Li, Y. & other authors (2011b). LysGH15, a novel bacteriophage lysin, protects a murine bacteremia model efficiently against lethal methicillin-resistant Staphylococcus aureus infection. J Clin Microbiol 49, 111-117.
    • (2011) J Clin Microbiol , vol.49 , pp. 111-117
    • Gu, J.1    Xu, W.2    Lei, L.3    Huang, J.4    Feng, X.5    Sun, C.6    Du, C.7    Zuo, J.8    Li, Y.9
  • 17
    • 85046980107 scopus 로고    scopus 로고
    • LysGH15 reduces the inflammation caused by lethal methicillin-resistant Staphylococcus aureus infection in mice
    • Gu, J., Zuo, J., Lei, L., Zhao, H., Sun, C., Feng, X., Du, C., Li, X., Yang, Y. & Han, W. (2011c). LysGH15 reduces the inflammation caused by lethal methicillin-resistant Staphylococcus aureus infection in mice. Bioeng Bugs 2, 96-99.
    • (2011) Bioeng Bugs , vol.2 , pp. 96-99
    • Gu, J.1    Zuo, J.2    Lei, L.3    Zhao, H.4    Sun, C.5    Feng, X.6    Du, C.7    Li, X.8    Yang, Y.9    Han, W.10
  • 18
    • 84865091087 scopus 로고    scopus 로고
    • Complete genome sequence of Staphylococcus aureus bacteriophage GH15
    • other authors
    • Gu, J., Liu, X., Lu, R., Li, Y., Song, J., Lei, L., Sun, C., Feng, X., Du, C. & other authors (2012). Complete genome sequence of Staphylococcus aureus bacteriophage GH15. J Virol 86, 8914-8915.
    • (2012) J Virol , vol.86 , pp. 8914-8915
    • Gu, J.1    Liu, X.2    Lu, R.3    Li, Y.4    Song, J.5    Lei, L.6    Sun, C.7    Feng, X.8    Du, C.9
  • 19
    • 12344329187 scopus 로고    scopus 로고
    • The natural history of group I introns
    • Haugen, P., Simon, D. M. & Bhattacharya, D. (2005). The natural history of group I introns. Trends Genet 21, 111-119.
    • (2005) Trends Genet , vol.21 , pp. 111-119
    • Haugen, P.1    Simon, D.M.2    Bhattacharya, D.3
  • 20
    • 0242323595 scopus 로고    scopus 로고
    • Bacteriophage genomics
    • Hendrix, R. W. (2003). Bacteriophage genomics. Curr Opin Microbiol 6, 506-511.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 506-511
    • Hendrix, R.W.1
  • 21
    • 0038392697 scopus 로고    scopus 로고
    • Bacteriophages with tails: Chasing their origins and evolution
    • Hendrix, R. W., Hatfull, G. F. & Smith, M. C. (2003). Bacteriophages with tails: chasing their origins and evolution. Res Microbiol 154, 253-257.
    • (2003) Res Microbiol , vol.154 , pp. 253-257
    • Hendrix, R.W.1    Hatfull, G.F.2    Smith, M.C.3
  • 22
    • 84455173447 scopus 로고    scopus 로고
    • Genomics of bacterial and archaeal viruses: Dynamics within the prokaryotic virosphere
    • Krupovic, M., Prangishvili, D., Hendrix, R. W. & Bamford, D. H. (2011). Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 75, 610-635.
    • (2011) Microbiol Mol Biol Rev , vol.75 , pp. 610-635
    • Krupovic, M.1    Prangishvili, D.2    Hendrix, R.W.3    Bamford, D.H.4
  • 24
    • 17044437752 scopus 로고    scopus 로고
    • The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
    • Kwan, T., Liu, J., DuBow, M., Gros, P. & Pelletier, J. (2005). The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci U S A 102, 5174-5179.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 5174-5179
    • Kwan, T.1    Liu, J.2    Dubow, M.3    Gros, P.4    Pelletier, J.5
  • 26
    • 0033536050 scopus 로고    scopus 로고
    • Unexpected abundance of self-splicing introns in the genome of bacteriophage Twort: Introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes
    • Landthaler, M. & Shub, D. A. (1999). Unexpected abundance of self-splicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes. Proc Natl Acad Sci U S A 96, 7005-7010.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 7005-7010
    • Landthaler, M.1    Shub, D.A.2
  • 27
    • 0036567507 scopus 로고    scopus 로고
    • Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort
    • Landthaler, M., Begley, U., Lau, N. C. & Shub, D. A. (2002). Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort. Nucleic Acids Res 30, 1935-1943.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1935-1943
    • Landthaler, M.1    Begley, U.2    Lau, N.C.3    Shub, D.A.4
  • 29
    • 49149115195 scopus 로고    scopus 로고
    • Unifying classical and molecular taxonomic classification: Analysis of the Podoviridae using BLASTP-based tools
    • Lavigne, R., Seto, D., Mahadevan, P., Ackermann, H.-W. & Kropinski, A. M. (2008). Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools. Res Microbiol 159, 406-414.
    • (2008) Res Microbiol , vol.159 , pp. 406-414
    • Lavigne, R.1    Seto, D.2    Mahadevan, P.3    Ackermann, H.-W.4    Kropinski, A.M.5
  • 31
    • 0036719291 scopus 로고    scopus 로고
    • Imbroglios of viral taxonomy: Genetic exchange and failings of phenetic approaches
    • Lawrence, J. G., Hatfull, G. F. & Hendrix, R. W. (2002). Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J Bacteriol 184, 4891-4905.
    • (2002) J Bacteriol , vol.184 , pp. 4891-4905
    • Lawrence, J.G.1    Hatfull, G.F.2    Hendrix, R.W.3
  • 32
    • 0022580661 scopus 로고
    • Lysogenic conversion of staphylococcal lipase is caused by insertion of the bacteriophage L54a genome into the lipase structural gene
    • Lee, C. Y. & Iandolo, J. J. (1986). Lysogenic conversion of staphylococcal lipase is caused by insertion of the bacteriophage L54a genome into the lipase structural gene. J Bacteriol 166, 385-391.
    • (1986) J Bacteriol , vol.166 , pp. 385-391
    • Lee, C.Y.1    Iandolo, J.J.2
  • 33
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M. & Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25, 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 34
    • 1942443183 scopus 로고    scopus 로고
    • Genome of staphylococcal phage K: A new lineage of Myoviridae infecting Gram-positive bacteria with a low G+C content
    • O'Flaherty, S., Coffey, A., Edwards, R., Meaney, W., Fitzgerald, G. F. & Ross, R. P. (2004). Genome of staphylococcal phage K: a new lineage of Myoviridae infecting Gram-positive bacteria with a low G+C content. J Bacteriol 186, 2862-2871.
    • (2004) J Bacteriol , vol.186 , pp. 2862-2871
    • O'Flaherty, S.1    Coffey, A.2    Edwards, R.3    Meaney, W.4    Fitzgerald, G.F.5    Ross, R.P.6
  • 36
    • 0033782899 scopus 로고    scopus 로고
    • Protein splicing and related forms of protein autoprocessing
    • Paulus, H. (2000). Protein splicing and related forms of protein autoprocessing. Annu Rev Biochem 69, 447-496.
    • (2000) Annu Rev Biochem , vol.69 , pp. 447-496
    • Paulus, H.1
  • 37
    • 0019550735 scopus 로고
    • The morphology of staphylococcal bacteriophage K and DNA metabolism in infected Staphylococcus aureus
    • Rees, P. J. & Fry, B. A. (1981). The morphology of staphylococcal bacteriophage K and DNA metabolism in infected Staphylococcus aureus. J Gen Virol 53, 293-307.
    • (1981) J Gen Virol , vol.53 , pp. 293-307
    • Rees, P.J.1    Fry, B.A.2
  • 38
    • 0036606915 scopus 로고    scopus 로고
    • Base composition bias might result from competition for metabolic resources
    • Rocha, E. P. & Danchin, A. (2002). Base composition bias might result from competition for metabolic resources. Trends Genet 18, 291-294.
    • (2002) Trends Genet , vol.18 , pp. 291-294
    • Rocha, E.P.1    Danchin, A.2
  • 39
    • 0036330981 scopus 로고    scopus 로고
    • The Phage Proteomic Tree: A genome-based taxonomy for phage
    • Rohwer, F. & Edwards, R. (2002). The Phage Proteomic Tree: a genome-based taxonomy for phage. J Bacteriol 184, 4529-4535.
    • (2002) J Bacteriol , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 40
    • 65649144613 scopus 로고    scopus 로고
    • Precipitation of bacteriophage l particles from large-scale lysates
    • pii: pdb.prot3966
    • Sambrook, J. & Russell, D. W. (2006). Precipitation of bacteriophage l particles from large-scale lysates. CSH Protoc 2006(1), pii: pdb.prot3966.
    • (2006) CSH Protoc , Issue.1
    • Sambrook, J.1    Russell, D.W.2
  • 43
    • 0028151655 scopus 로고
    • Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns
    • Shub, D. A., Goodrich-Blair, H. & Eddy, S. R. (1994). Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns. Trends Biochem Sci 19, 402-404.
    • (1994) Trends Biochem Sci , vol.19 , pp. 402-404
    • Shub, D.A.1    Goodrich-Blair, H.2    Eddy, S.R.3


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