Genetic variability studies among natural populations of Capparis spinosa from cold arid desert of trans-Himalayas using DNA markers

National Academy Science Letters

Volumn 35, Issue 6, 2012, Pages 505-515

  Bhoyar, Manish S ^a   Mishra, Gyan P ^a,c   Naik, Pradeep K ^b   Murkute, Ashutosh A ^a   Srivastava, R B ^a  

^a Leh Ladakh C o 56APO   (India)

^b JAYPEE UNIVERSITY OF INFORMATION TECHNOLOGY   (India)

^c ICAR DIRECTORATE OF GROUNDNUT RESEARCH   (India)

Author keywords

Amova; Caper; Genetic diversity; ISSR; RAPD

Indexed keywords

EID: 84875653983     PISSN: 0250541X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s40009-012-0086-y     Document Type: Article

References (28)

1. Aguilar R, Quesada M, Ashworth L, Herreriasdiego Y, Lobo J (2008) Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Mol Ecol 17:5177-5188
2. Chen KX, Wang R, Chen XY (2008) Genetic structure of Alpinia japonica populations in naturally fragmented habitats. Acta Ecol Sin 28:2480-2485
3. Young AG, Merriam HG, Warwick SI (1993) The effects of forest fragmentation on genetic variation in Acer saccharum Marsh. (Sugar maple) population. Heredity 71:277-289
4. Mishra GP, Singh R, Bhoyar MS, Singh SB (2009) Capparis spinosa: unconventional potential food source in cold arid deserts of Ladakh. Curr Sci 96:1563-1564
5. Bhoyar MS, Mishra GP, Naik PK, Srivastava RB (2011) Estimation of antioxidant activity and total phenolics among natural populations of Capparis spinosa leaves collected from cold arid desert of trans-Himalayas. Aust J Crop Sci 5:912-919
6. Gupta S, Srivastava M, Mishra GP, Naik PK, Chauhan RS, Tiwari SK, Kumar M, Singh R (2008) Analogy of ISSR and RAPD markers for comparative analysis of genetic diversity among different Jatropha curcas genotypes. Afr J Biotechnol 23:4230-4243
7. Alam A, Naik PK, Mishra GP (2009) Congruence of RAPD and ISSR markers for evaluation of genomic relationship among 28 populations of Podophyllum hexandrum from Himachal Pradesh. Turk J Bot 33:1-12
8. Khouildi S, Pagnotta MA, Tanzarella OA, Porceddu E, Ghorbel A (1999) Assessment of the genetic variation in natural populations of Capparis spinosa L. using RAPD analysis. CWANA Newsl 19:8
9. Inocencio C, Cowan RS, Alcaraz F, Rivera D, Fay MF (2005) AFLP fingerprinting in Capparis subgenus Capparis related to the commercial sources of capers. Genet Res Crop Evol 52:137-144 (Pubitemid 40572957)
10. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal spacer length in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81:8104-8118
11. Peakall R, Smouse PE (2001) GenAlEx V5: genetic analysis in excel. Population genetic software for teaching and research. Australian National University, Canberra, Australia
12. Zhao WG, Zhang JQ, Wangi YH, Chen TT, Yin Y, Huang YP, Pan Y, Yang Y (2006) Analysis of genetic diversity in wild populations of mulberry from western part of Northeast China determined by ISSR markers. J Genet Mol Biol 7:196-203
13. Excoffier L, Smouse PE, Quattro JM (1992) Analyses of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-4191
14. Perrier X, Jacquemoud-Collet JP (2006) DARwin software. http://darwin. cirad.fr/
15. Prevost A, Wilkinson MJ (1999) A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor Appl Genet 98:107-112 (Pubitemid 29167224)
16. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2:225-238 (Pubitemid 126706643)
17. Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7:574-578 (Pubitemid 47035522)
18. Kumar M, Mishra GP, Singh R, Kumar J, Naik PK, Singh SB (2009) Correspondence of ISSR and RAPD markers for comparative analysis of genetic diversity among different apricot genotypes from cold arid deserts of trans-Himalayas. Physiol Mol Biol Plants 15:225-236
19. Hou Y, Lou A (2011) Population genetic diversity and structure of a naturally isolated plant species, Rhodiola dumulosa (Crassulaceae). PLoS ONE 6(9):e24497. doi:10.1371/joumal.pone. 0024497
20. Ajibade SR, Weeden NF, Chite SM (2000) Inter simple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica 111:47-55 (Pubitemid 30124241)
21. Montes PS, Fornoni J, Farfan NJ (2011) Conservation genetics of the endemic Mexican Heliconia unpanapensis in the Los Tuxtlas tropical rain forest. Biotropica 43:114-121
22. Gaffor A, Sharif A, Ahmad Z, Zahid MA, Rabbani MA (2001) Genetic diversity in blackgram (Vigna mungo L. Hepper). Field Crop Res 69:183-190 (Pubitemid 32103000)
23. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA (1998) Phylogeographic studies in plants: problems and prospects. Mol Ecol 7:465-474 (Pubitemid 28226693)
24. Laurentin H, Karlovsky P (2007) AFLP fingerprinting of sesame (Sesamum indicum L.) cultivars: identification, genetic relationship and comparison of AFLP informativeness parameters. Genet Resour Crop Evol 54:1437-1446 (Pubitemid 47547263)
25. Baghizadeh A, Noroozi S, Javaran MJ (2010) Study on genetic diversity of some Iranian Pistachio (Pistacia vera L.) cultivars using random amplified polymorphic DNA (RAPD), inter sequence repeat (ISSR) and simple sequence repeat (SSR) markers: a comparative study. Afr J Biotechnol 9:7632-7640
26. Geert A, Rossum F, Triest L (2008) Genetic diversity in adult and seedling populations of Primula vulgaris in a fragmented agricultural landscape. Conserv Genet 9:845-853
27. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13:1143-1155 (Pubitemid 38504420)
28. Bhoyar MS, Mishra GP, Singh R, Singh SB (2010) Effects of various dormancy breaking treatments on the germination of wild caper (Capparis spinosa L.) seeds from the cold arid desert of trans-Himalayas. Indian J Agric Sci 80:620-624