Peptide-bacteria interactions using engineered surface-immobilized peptides from class IIa bacteriocins

Langmuir

Volumn 29, Issue 12, 2013, Pages 4048-4056

  Etayash, Hashem ^a   Norman, Lana ^a   Thundat, Thomas ^a   Kaur, Kamaljit ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIMICROBIAL PEPTIDE; BIOSENSING PLATFORMS; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIUM; GRAZING ANGLE INFRARED SPECTROSCOPY; LISTERIA MONOCYTOGENES; MEMBRANE-BOUND RECEPTORS; MOLECULAR RECOGNITION ELEMENT;

AMINO ACIDS; ASCORBIC ACID; BACTERIA; BINDING ENERGY; CELL MEMBRANES; CYTOLOGY; INFRARED SPECTROSCOPY; MASS SPECTROMETRY; MOLECULAR ORIENTATION; MOLECULAR RECOGNITION; POLYPEPTIDES;

PEPTIDES;

ANTIINFECTIVE AGENT; BACTERIOCIN; GOLD; IMMOBILIZED PROTEIN; PEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; CARNOBACTERIUM; CHEMICAL STRUCTURE; CHEMISTRY; ESCHERICHIA COLI; ISOLATION AND PURIFICATION; LISTERIA; LISTERIA MONOCYTOGENES; MASS SPECTROMETRY; MICROBIAL SENSITIVITY TEST; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN BINDING; PROTEIN ENGINEERING; PROTEIN SECONDARY STRUCTURE; STRUCTURE ACTIVITY RELATION; SYNTHESIS;

AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; BACTERIOCINS; CARNOBACTERIUM; ESCHERICHIA COLI; GOLD; IMMOBILIZED PROTEINS; LISTERIA; LISTERIA MONOCYTOGENES; MASS SPECTROMETRY; MICROBIAL SENSITIVITY TESTS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN BINDING; PROTEIN ENGINEERING; PROTEIN STRUCTURE, SECONDARY; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 84875593249     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la3041743     Document Type: Article

References (54)

1. Cotter, P. D.; Hill, C.; Ross, R. P. Bacteriocins: Developing innate immunity for food Nat. Rev. Microbiol. 2005, 3, 777-88
2. Brogden, K. A. Antimicrobial peptides: Pore formers or metabolic inhibitors in bacteria? Nat. Rev. Microbiol. 2005, 3, 238-250
3. Guani-Guerra, E.; Santos-Mendoza, T.; Lugo-Reyes, S. O.; Teran, L. M. Antimicrobial peptides: General overview and clinical implications in human health and disease Clin. Immunol. (Amsterdam, Neth.) 2010, 135, 1-11
4. Hancock, R. E. W. Peptide antibiotics Lancet. 1997, 349, 418-422
5. Yeaman, M. R.; Yount, N. Y. Mechanisms of antimicrobial peptide action and resistance Pharmacol. Rev. 2003, 55, 27-55
6. Fantner, G. E.; Barbero, R. J.; Gray, D. S.; Belcher, A. M. Kinetics of antimicrobial peptide activity measured on individual bacterial cells using high-speed atomic force microscopy Nat. Nanotechnol. 2010, 5, 280-5
7. Hancock, R. E. W.; Scott, M. G. The role of antimicrobial peptides in animal defenses Proc. Natl. Acad. Sci. U.S.A 2000, 97, 8856-8861
8. Wimley, W. C. Describing the mechanism of antimicrobial peptide action with the interfacial activity model ACS Chem. Biol. 2010, 5, 905-917
9. Yount, N. Y.; Bayer, A. S.; Xiong, Y. Q.; Yeaman, M. R. Advances in antimicrobial peptide immunobiology Biopolymers 2006, 84, 435-58
10. Hoskin, D. W.; Ramamoorthy, A. Studies on anticancer activities of antimicrobial peptides Biochim. Biophys. Acta 2008, 1778, 357-75
11. Manafi, M. Fluorogenic and chromogenic enzyme substrates in culture media and identification tests Int. J. Food Microbiol. 1996, 31, 45-58
12. Rantsiou, K.; Alessandria, V.; Urso, R.; Dolci, P.; Cocolin, L. Detection, quantification and vitality of Listeria monocytogenes in food as determined by quantitative PCR Int. J. Food Microbiol. 2008, 121, 99-105
13. Nicolas, P.; Mor, A. Peptides as weapons against microorganisms in the chemical defense system of vertebrates Annu. Rev. Microbiol. 1995, 49, 277-304
14. Mannoor, M. S.; Zhang, S.; Link, A. J.; McAlpine, M. C. Electrical detection of pathogenic bacteria via immobilized antimicrobial peptides Proc. Natl. Acad. Sci. U.S.A 2010, 107, 19207-12
15. Kulagina, N.; Anderson, G.; Ligler, F.; Shaffer, K.; Taitt, C. Antimicrobial peptides: New recognition molecules for detecting botulinum toxins Sensors 2007, 7, 2808-2824
16. Kulagina, N. V.; Shaffer, K. M.; Anderson, G. P.; Ligler, F. S.; Taitt, C. R. Antimicrobial peptide-based array for Escherichia coli and Salmonella screening Anal. Chim. Acta 2006, 575, 9-15
17. Kulagina, N. V.; Lassman, M. E.; Ligler, F. S.; Taitt, C. R. Antimicrobial peptides for detection of bacteria in biosensor assays Anal. Chem. 2005, 77, 6504-8
18. Onaizi, S. A.; Leong, S. S. Tethering antimicrobial peptides: Current status and potential challenges Biotechnol. Adv. 2011, 29, 67-74
19. Fregeau Gallagher, N. L.; Sailer, M.; Niemczura, W. P.; Nakashima, T. T.; Stiles, M. E.; Vederas, J. C. Three-dimensional structure of leucocin A in trifluoroethanol and dodecylphosphocholine micelles: Spatial location of residues critical for biological activity in type IIa bacteriocins from lactic acid bacteria Biochemistry 1997, 36, 15062-72
20. Drider, D.; Fimland, G.; Hechard, Y.; McMullen, L. M.; Prevost, H. The continuing story of class IIa bacteriocins Microbiol. Mol. Biol. Rev. 2006, 70, 564-82
21. Fimland, G.; Johnsen, L.; Dalhus, B.; Nissen-Meyer, J. Pediocin-like antimicrobial peptides (class IIa bacteriocins) and their immunity proteins: Biosynthesis, structure, and mode of action J. Pept. Sci. 2005, 11, 688-96
22. Nissen-Meyer, J.; Rogne, P.; Oppegard, C.; Haugen, H. S.; Kristiansen, P. E. Structure-function relationships of the non-lanthionine-containing peptide (class II) bacteriocins produced by gram-positive bacteria Curr. Pharm. Biotechnol. 2009, 10, 19-37
23. Johnsen, L.; Fimland, G.; Nissen-Meyer, J. The C-terminal domain of pediocin-like antimicrobial peptides (class IIa bacteriocins) is involved in specific recognition of the C-terminal part of cognate immunity proteins and in determining the antimicrobial spectrum J. Biol. Chem. 2005, 280, 9243-50
24. Fimland, G.; Blingsmo, O. R.; Sletten, K.; Jung, G.; Nes, I. F.; Nissen-Meyer, J. New biologically active hybrid bacteriocins constructed by combining regions from various pediocin-like bacteriocins: The C-terminal region is important for determining specificity Appl. Environ. Microbiol. 1996, 62, 3313-8
25. Yan, L. Z.; Gibbs, A. C.; Stiles, M. E.; Wishart, D. S.; Vederas, J. C. Analogues of bacteriocins: Antimicrobial specificity and interactions of leucocin A with its enantiomer, carnobacteriocin B2, and truncated derivatives J. Med. Chem. 2000, 43, 4579-81
26. Kaur, K.; Andrew, L. C.; Wishart, D. S.; Vederas, J. C. Dynamic relationships among type IIa bacteriocins: Temperature effects on antimicrobial activity and on structure of the C-terminal amphipathic alpha helix as a receptor-binding region Biochemistry 2004, 43, 9009-20
27. Haugen, H. S.; Fimland, G.; Nissen-Meyer, J. Mutational analysis of residues in the helical region of the class IIa bacteriocin pediocin PA-1 Appl. Environ. Microbiol. 2011, 77, 1966-72
28. Ramnath, M.; Arous, S.; Gravesen, A.; Hastings, J. W.; Hechard, Y. Expression of mptC of Listeria monocytogenes induces sensitivity to class IIa bacteriocins in Lactococcus lactis Microbiology 2004, 150, 2663-8
29. Ramnath, M.; Beukes, M.; Tamura, K.; Hastings, J. W. Absence of a putative mannose-specific phosphotransferase system enzyme IIAB component in a leucocin A-resistant strain of Listeria monocytogenes, as shown by two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis Appl. Environ. Microbiol. 2000, 66, 3098-101
30. Diep, D. B.; Skaugen, M.; Salehian, Z.; Holo, H.; Nes, I. F. Common mechanisms of target cell recognition and immunity for class II bacteriocins Proc. Natl. Acad. Sci. U.S.A 2007, 104, 2384-9
31. Kaiser, E.; Colescott, R. L.; Bossinger, C. D.; Cook, P. I. Color test for detection of free terminal amino groups in the solid-phase synthesis of peptides Anal. Biochem. 1970, 34, 595-8
32. Derksen, D. J.; Boudreau, M. A.; Vederas, J. C. Hydrophobic interactions as substitutes for a conserved disulfide linkage in the type IIa bacteriocins, leucocin A and pediocin PA-1 ChemBiochem 2008, 9, 1898-901
33. Miura, Y.; Kimura, S.; Imanishi, Y.; Umemura, J. Formation of oriented helical peptide layers on a gold surface due to the self-assembling properties of peptides Langmuir 1998, 14, 6935-6940
34. Boncheva, M.; Vogel, H. Formation of stable polypeptide monolayers at interfaces: Controlling molecular conformation and orientation Biophys. J. 1997, 73, 1056-1072
35. Tsuboi, M. Infrared dichroism and molecular conformation of alpha-form poly-gamma-benzyl- l -glutamate J. Polym. Sci. 1962, 59, 139-153
36. Sigal, G. B.; Mrksich, M.; Whitesides, G. M. Using surface plasmon resonance spectroscopy to measure the association of detergents with self-assembled monolayers of hexadecanethiolate on gold Langmuir 1997, 13, 2749-2755
37. Salvucci, E.; Saavedra, L.; Sesma, F. Short peptides derived from the NH2-terminus of subclass IIa bacteriocin enterocin CRL35 show antimicrobial activity J. Antimicrob. Chemother. 2007, 59, 1102-8
38. Hughes, A. B. Amino Acids, Peptides, And Proteins in Organic Chemistry; Wiley-VCH: Weinheim, Germany, 2009.
39. Kennedy, D. F.; Crisma, M.; Toniolo, C.; Chapman, D. Studies of forming 3(10)-helices and alpha-helices and beta-bend ribbon structures in organic solution and in model biomembranes by fourier-transform infrared-spectroscopy Biochemistry 1991, 30, 6541-6548
40. Enander, K.; Aili, D.; Baltzer, L.; Lundstrom, I.; Liedberg, B. Alpha-helix-inducing dimerization of synthetic polypeptide scaffolds on gold Langmuir 2005, 21, 2480-7
41. Uzarski, J. R.; Tannous, A.; Morris, J. R.; Mello, C. M. The effects of solution structure on the surface conformation and orientation of a cysteine-terminated antimicrobial peptide cecropin P1 Colloids Surf., B 2008, 67, 157-165
42. Liedberg, B.; Ivarsson, B.; Hegg, P. O.; Lundstrom, I. On the adsorption of beta-lactoglobulin on hydrophilic gold surfaces: Studies by infrared reflection absorption-spectroscopy and ellipsometry J. Colloid Interface Sci. 1986, 114, 386-397
43. Sakurai, T.; Oka, S.; Kubo, A.; Nishiyama, K.; Taniguchi, I. Formation of oriented polypeptides on Au(111) surface depends on the secondary structure controlled by peptide length J. Pept. Sci. 2006, 12, 396-402
44. Abee, T.; Klaenhammer, T. R.; Letellier, L. Kinetic studies of the action of lactacin F, a bacteriocin produced by Lactobacillus johnsonii that forms poration complexes in the cytoplasmic membrane Appl. Environ. Microbiol. 1994, 60, 1006-13
45. Chen, Y.; Ludescher, R. D.; Montville, T. J. Influence of lipid composition on pediocin PA-1 binding to phospholipid vesicles Appl. Environ. Microbiol. 1998, 64, 3530-2
46. Corbier, C.; Krier, F.; Mulliert, G.; Vitoux, B.; Revol-Junelles, A. M. Biological activities and structural properties of the atypical bacteriocins mesenterocin 52b and leucocin b-ta33a Appl. Environ. Microbiol. 2001, 67, 1418-22
47. Vadyvaloo, V.; Arous, S.; Gravesen, A.; Hechard, Y.; Chauhan-Haubrock, R.; Hastings, J. W.; Rautenbach, M. Cell-surface alterations in class IIa bacteriocin-resistant Listeria monocytogenes strains Microbiology 2004, 150, 3025-33
48. Kjos, M.; Nes, I. F.; Diep, D. B. Class II one-peptide bacteriocins target a phylogenetically defined subgroup of mannose phosphotransferase systems on sensitive cells Microbiology 2009, 155, 2949-61
49. Jacquet, T.; Cailliez-Grimal, C.; Francius, G.; Borges, F.; Imran, M.; Duval, J. F.; Revol-Junelles, A. M. Antibacterial activity of class IIa bacteriocin Cbn BM1 depends on the physiological state of the target bacteria Res. Microbiol. 2012, 163, 323-31
50. Strauss, J.; Kadilak, A.; Cronin, C.; Mello, C. M.; Camesano, T. A. Binding, inactivation, and adhesion forces between antimicrobial peptide cecropin P1 and pathogenic E. coli Colloids Surf., B 2010, 75, 156-164
51. Gregory, K.; Mello, C. M. Immobilization of Escherichia coli cells by use of the antimicrobial peptide cecropin P1 Appl. Environ. Microbiol. 2005, 71, 1130-4
52. Jonkheijm, P.; Weinrich, D.; Schroder, H.; Niemeyer, C. M.; Waldmann, H. Chemical strategies for generating protein biochips Angew. Chem., Int. Ed. 2008, 47, 9618-47
53. Rusmini, F.; Zhong, Z.; Feijen, J. Protein immobilization strategies for protein biochips Biomacromolecules 2007, 8, 1775-89
54. Balamurugan, S.; Obubuafo, A.; Soper, S. A.; Spivak, D. A. Surface immobilization methods for aptamer diagnostic applications Anal. Bioanal. Chem. 2008, 390, 1009-21