메뉴 건너뛰기




Volumn 8, Issue 3, 2013, Pages

Multiple Interkingdom Horizontal Gene Transfers in Pyrenophora and Closely Related Species and Their Contributions to Phytopathogenic Lifestyles

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CARBOHYDRATE METABOLISM; CARBOHYDRATE TRANSPORT; CELL WALL; CONTROLLED STUDY; DNA BASE COMPOSITION; FUNGAL GENE; FUNGAL GENOME; FUNGAL PLANT DISEASE; FUNGAL VIRULENCE; FUNGUS; GENE EXPRESSION; GENE FUNCTION; GENE LOSS; HORIZONTAL GENE TRANSFER; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT CELL; PROTEIN PROTEIN INTERACTION; PYRENOPHORA TERES; PYRENOPHORA TRITICIREPENTIS;

EID: 84875539053     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060029     Document Type: Article
Times cited : (29)

References (54)
  • 1
    • 78149233217 scopus 로고    scopus 로고
    • A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
    • Ellwood SR, Liu Z, Syme RA, Lai Z, Hane JK, et al. (2010) A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres. Genome Biol 11: R109.
    • (2010) Genome Biol , vol.11
    • Ellwood, S.R.1    Liu, Z.2    Syme, R.A.3    Lai, Z.4    Hane, J.K.5
  • 2
    • 65549151729 scopus 로고    scopus 로고
    • Role of horizontal gene transfer in the evolution of plant parasitism among nematodes
    • Mitreva M, Smant G, Helder J, (2009) Role of horizontal gene transfer in the evolution of plant parasitism among nematodes. Methods Mol Biol 532: 517-535.
    • (2009) Methods Mol Biol , vol.532 , pp. 517-535
    • Mitreva, M.1    Smant, G.2    Helder, J.3
  • 3
    • 34248396432 scopus 로고    scopus 로고
    • Global extent of horizontal gene transfer
    • Choi IG, Kim SH, (2007) Global extent of horizontal gene transfer. Proc Natl Acad Sci U S A 104: 4489-4494.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 4489-4494
    • Choi, I.G.1    Kim, S.H.2
  • 4
    • 20444500847 scopus 로고    scopus 로고
    • Evolutionary aspects of whole-genome biology
    • Doolittle RF, (2005) Evolutionary aspects of whole-genome biology. Curr Opin Struc Biol 15: 248-253.
    • (2005) Curr Opin Struc Biol , vol.15 , pp. 248-253
    • Doolittle, R.F.1
  • 5
    • 34347364443 scopus 로고    scopus 로고
    • Integrons: mobilizable platforms that promote genetic diversity in bacteria
    • Boucher Y, Labbate M, Koenig JE, Stokes HW, (2007) Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends Microbiol 15: 301-309.
    • (2007) Trends Microbiol , vol.15 , pp. 301-309
    • Boucher, Y.1    Labbate, M.2    Koenig, J.E.3    Stokes, H.W.4
  • 6
    • 48249151749 scopus 로고    scopus 로고
    • Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
    • Dagan T, Artzy-Randrup Y, Martin W, (2008) Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci U S A 105: 10039-10044.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 10039-10044
    • Dagan, T.1    Artzy-Randrup, Y.2    Martin, W.3
  • 7
    • 64349107871 scopus 로고    scopus 로고
    • DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genes
    • Dorman CJ, Kane KA, (2009) DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genes. FEMS Microbiol Rev 33: 587-592.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 587-592
    • Dorman, C.J.1    Kane, K.A.2
  • 8
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD, (2008) Horizontal gene transfer in eukaryotic evolution. Nature Rev Genet 9: 605-618.
    • (2008) Nature Rev Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 10
    • 84887212800 scopus 로고    scopus 로고
    • Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi
    • Schmitt I, Lumbsch HT, (2009) Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi. PLoS ONE 4: e4437.
    • (2009) PLoS ONE , vol.4
    • Schmitt, I.1    Lumbsch, H.T.2
  • 11
    • 84863204810 scopus 로고    scopus 로고
    • Horizontal transfer and death of a fungal secondary metabolic gene cluster
    • Campbell MA, Rokas A, Slot JC, (2012) Horizontal transfer and death of a fungal secondary metabolic gene cluster. Genome Biol Evol 4: 289-293.
    • (2012) Genome Biol Evol , vol.4 , pp. 289-293
    • Campbell, M.A.1    Rokas, A.2    Slot, J.C.3
  • 12
    • 79151477225 scopus 로고    scopus 로고
    • Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi
    • Slot JC, Rokas A, (2011) Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr Biol 21: 134-139.
    • (2011) Curr Biol , vol.21 , pp. 134-139
    • Slot, J.C.1    Rokas, A.2
  • 13
    • 77953399342 scopus 로고    scopus 로고
    • Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi
    • Slot JC, Rokas A, (2010) Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi. Proc Natl Acad Sci U S A 107: 10136-10141.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 10136-10141
    • Slot, J.C.1    Rokas, A.2
  • 14
    • 44649170477 scopus 로고    scopus 로고
    • Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
    • Khaldi N, Collemare J, Lebrun MH, Wolfe KH, (2008) Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol 9: R18.
    • (2008) Genome Biol , vol.9
    • Khaldi, N.1    Collemare, J.2    Lebrun, M.H.3    Wolfe, K.H.4
  • 15
    • 0033738805 scopus 로고    scopus 로고
    • Role of horizontal gene transfer in the evolution of fungi
    • Rosewich UL, Kistler HC, (2000) Role of horizontal gene transfer in the evolution of fungi. Annu Rev Phytopatho 38: 325-363.
    • (2000) Annu Rev Phytopatho , vol.38 , pp. 325-363
    • Rosewich, U.L.1    Kistler, H.C.2
  • 16
    • 84855906518 scopus 로고    scopus 로고
    • Horizontal transfer of supernumerary chromosomes in fungi
    • van der Does HC, Rep M, (2012) Horizontal transfer of supernumerary chromosomes in fungi. Methods Mol Biol 835: 427-437.
    • (2012) Methods Mol Biol , vol.835 , pp. 427-437
    • van der Does, H.C.1    Rep, M.2
  • 17
  • 18
    • 84857788331 scopus 로고    scopus 로고
    • Horizontal gene transfer in fungi
    • Fitzpatrick DA, (2011) Horizontal gene transfer in fungi. FEMS Microbiol Lett 329: 1-8.
    • (2011) FEMS Microbiol Lett , vol.329 , pp. 1-8
    • Fitzpatrick, D.A.1
  • 19
    • 76749091910 scopus 로고    scopus 로고
    • Genes acquired by horizontal transfer are potentially involved in the evolution of phytopathogenicity in Moniliophthora perniciosa and Moniliophthora roreri, two of the major pathogens of cacao
    • Tiburcio RA, Costa GG, Carazzolle MF, Mondego JM, Schuster SC, et al. (2010) Genes acquired by horizontal transfer are potentially involved in the evolution of phytopathogenicity in Moniliophthora perniciosa and Moniliophthora roreri, two of the major pathogens of cacao. J Mol Evol 70: 85-97.
    • (2010) J Mol Evol , vol.70 , pp. 85-97
    • Tiburcio, R.A.1    Costa, G.G.2    Carazzolle, M.F.3    Mondego, J.M.4    Schuster, S.C.5
  • 20
    • 33750986760 scopus 로고    scopus 로고
    • Rapid disease emergence through horizontal gene transfer between eukaryotes
    • Sanders IR, (2006) Rapid disease emergence through horizontal gene transfer between eukaryotes. Trends Ecol Evol 21: 656-658.
    • (2006) Trends Ecol Evol , vol.21 , pp. 656-658
    • Sanders, I.R.1
  • 21
    • 33746576136 scopus 로고    scopus 로고
    • Emergence of a new disease as a result of interspecific virulence gene transfer
    • Friesen TL, Stukenbrock EH, Liu ZH, Meinhardt S, Ling H, et al. (2006) Emergence of a new disease as a result of interspecific virulence gene transfer. Nat Genet 38: 953-956.
    • (2006) Nat Genet , vol.38 , pp. 953-956
    • Friesen, T.L.1    Stukenbrock, E.H.2    Liu, Z.H.3    Meinhardt, S.4    Ling, H.5
  • 23
    • 79955149691 scopus 로고    scopus 로고
    • Expansion and variability of the Ptr Tox a gene in populations of Pyrenophora tritici-repentis and Pyrenophora teres
    • Leisova-Svobodova L, Hanzalova A, Kucera L, (2010) Expansion and variability of the Ptr Tox a gene in populations of Pyrenophora tritici-repentis and Pyrenophora teres. J Plant Pathol 92: 729-735.
    • (2010) J Plant Pathol , vol.92 , pp. 729-735
    • Leisova-Svobodova, L.1    Hanzalova, A.2    Kucera, L.3
  • 24
    • 72449164089 scopus 로고    scopus 로고
    • Acquisition of prokaryotic genes by fungal genomes
    • Marcet-Houben M, Gabaldon T, (2010) Acquisition of prokaryotic genes by fungal genomes. Trends Genet 26: 5-8.
    • (2010) Trends Genet , vol.26 , pp. 5-8
    • Marcet-Houben, M.1    Gabaldon, T.2
  • 25
    • 84866933213 scopus 로고    scopus 로고
    • A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans
    • Pavlidis P, Jensen JD, Stephan W, Stamatakis A, (2012) A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Mol Biol Evol 29: 3237-3248.
    • (2012) Mol Biol Evol , vol.29 , pp. 3237-3248
    • Pavlidis, P.1    Jensen, J.D.2    Stephan, W.3    Stamatakis, A.4
  • 26
    • 69949175105 scopus 로고    scopus 로고
    • Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi
    • Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, et al. (2009) Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. Plant Cell 21: 1897-1911.
    • (2009) Plant Cell , vol.21 , pp. 1897-1911
    • Richards, T.A.1    Soanes, D.M.2    Foster, P.G.3    Leonard, G.4    Thornton, C.R.5
  • 27
    • 79961219761 scopus 로고    scopus 로고
    • Acquisition of an animal gene by microsporidian intracellular parasites
    • Selman M, Pombert JF, Solter L, Farinelli L, Weiss LM, et al. (2011) Acquisition of an animal gene by microsporidian intracellular parasites. Curr Biol 21: R576-577.
    • (2011) Curr Biol , vol.21
    • Selman, M.1    Pombert, J.F.2    Solter, L.3    Farinelli, L.4    Weiss, L.M.5
  • 28
    • 84866897256 scopus 로고    scopus 로고
    • Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts
    • Gardiner DM, McDonald MC, Covarelli L, Solomon PS, Rusu AG, et al. (2012) Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts. PLoS Pathogens 8: e1002952.
    • (2012) PLoS Pathogens , vol.8
    • Gardiner, D.M.1    McDonald, M.C.2    Covarelli, L.3    Solomon, P.S.4    Rusu, A.G.5
  • 29
    • 80053058594 scopus 로고    scopus 로고
    • Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
    • Richards TA, Soanes DM, Jones MD, Vasieva O, Leonard G, et al. (2011) Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc Natl Acad Sci U S A 108: 15258-15263.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 15258-15263
    • Richards, T.A.1    Soanes, D.M.2    Jones, M.D.3    Vasieva, O.4    Leonard, G.5
  • 30
    • 79956280303 scopus 로고    scopus 로고
    • A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi
    • Hane JK, Rouxel T, Howlett BJ, Kema GH, Goodwin SB, et al. (2011) A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi. Genome Biol 12: R45.
    • (2011) Genome Biol , vol.12
    • Hane, J.K.1    Rouxel, T.2    Howlett, B.J.3    Kema, G.H.4    Goodwin, S.B.5
  • 31
  • 32
    • 77955805592 scopus 로고    scopus 로고
    • A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens
    • Faris JD, Zhang Z, Lu H, Lu S, Reddy L, et al. (2010) A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens. Proc Natl Acad Sci U S A 107: 13544-13549.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 13544-13549
    • Faris, J.D.1    Zhang, Z.2    Lu, H.3    Lu, S.4    Reddy, L.5
  • 33
    • 77955589874 scopus 로고    scopus 로고
    • AidH, an alpha/beta-hydrolase fold family member from an Ochrobactrum sp. strain, is a novel N-acylhomoserine lactonase
    • Mei GY, Yan XX, Turak A, Luo ZQ, Zhang LQ, (2010) AidH, an alpha/beta-hydrolase fold family member from an Ochrobactrum sp. strain, is a novel N-acylhomoserine lactonase. Appl Environ Microbiol 76: 4933-4942.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4933-4942
    • Mei, G.Y.1    Yan, X.X.2    Turak, A.3    Luo, Z.Q.4    Zhang, L.Q.5
  • 34
    • 34547913442 scopus 로고    scopus 로고
    • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    • Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci U S A 104: 12825-12830.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 12825-12830
    • Wei, W.1    McCusker, J.H.2    Hyman, R.W.3    Jones, T.4    Ning, Y.5
  • 35
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: rates of change and exchange
    • Lawrence JG, Ochman H, (1997) Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol 44: 383-397.
    • (1997) J Mol Evol , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 36
    • 80055095412 scopus 로고    scopus 로고
    • Eukaryotic origin of a metabolic pathway in virus by horizontal gene transfer
    • Wu DD, Zhang YP, (2011) Eukaryotic origin of a metabolic pathway in virus by horizontal gene transfer. Genomics 98: 367-369.
    • (2011) Genomics , vol.98 , pp. 367-369
    • Wu, D.D.1    Zhang, Y.P.2
  • 37
    • 20044369186 scopus 로고    scopus 로고
    • An adaptive radiation model for the origin of new gene functions
    • Francino MP, (2005) An adaptive radiation model for the origin of new gene functions. Nature Genet 37: 573-577.
    • (2005) Nature Genet , vol.37 , pp. 573-577
    • Francino, M.P.1
  • 38
    • 39049085373 scopus 로고    scopus 로고
    • Wolbachia genome integrated in an insect chromosome: Evolution and fate of laterally transferred endosymbiont genes
    • Nikoh N, Tanaka K, Shibata F, Kondo N, Hizume M, et al. (2008) Wolbachia genome integrated in an insect chromosome: Evolution and fate of laterally transferred endosymbiont genes. Genome Res 18: 272-280.
    • (2008) Genome Res , vol.18 , pp. 272-280
    • Nikoh, N.1    Tanaka, K.2    Shibata, F.3    Kondo, N.4    Hizume, M.5
  • 39
    • 0037306453 scopus 로고    scopus 로고
    • Ancient horizontal gene transfer
    • Brown JR, (2003) Ancient horizontal gene transfer. Nature Rev Genet 4: 121-132.
    • (2003) Nature Rev Genet , vol.4 , pp. 121-132
    • Brown, J.R.1
  • 40
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 41
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 42
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 43
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 44
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D, (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 45
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 48
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • Emanuelsson O, Brunak S, von Heijne G, Nielsen H, (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
    • (2007) Nat Protoc , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 49
    • 0031614678 scopus 로고    scopus 로고
    • A hidden Markov model for predicting transmembrane helices in protein sequences
    • Sonnhammer EL, von Heijne G, Krogh A, (1998) A hidden Markov model for predicting transmembrane helices in protein sequences. Proc Int Conf Intell Syst Mol Biol 6: 175-182.
    • (1998) Proc Int Conf Intell Syst Mol Biol , vol.6 , pp. 175-182
    • Sonnhammer, E.L.1    von Heijne, G.2    Krogh, A.3
  • 51
    • 33846067070 scopus 로고    scopus 로고
    • TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)
    • O'Brien EA, Koski LB, Zhang Y, Yang L, Wang E, et al. (2007) TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). Nucleic Acids Res 35: D445-451.
    • (2007) Nucleic Acids Res , vol.35
    • O'Brien, E.A.1    Koski, L.B.2    Zhang, Y.3    Yang, L.4    Wang, E.5
  • 52
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 53
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang JZ, Nielsen R, Yang ZH, (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 22: 2472-2479.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.Z.1    Nielsen, R.2    Yang, Z.H.3
  • 54
    • 79959972414 scopus 로고    scopus 로고
    • Evidence for acquisition of virulence effectors in pathogenic chytrids
    • Sun GL, Yang ZF, Kosch T, Summers K, Huang JL, (2011) Evidence for acquisition of virulence effectors in pathogenic chytrids. BMC Evol Biol 11: 195.
    • (2011) BMC Evol Biol , vol.11 , pp. 195
    • Sun, G.L.1    Yang, Z.F.2    Kosch, T.3    Summers, K.4    Huang, J.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.