-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
-
Ban N, Nissen P, Hansen J, Moore PB, Steitz TA. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289:905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
3
-
-
2942571539
-
The comparative RNA Web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, et al. 2002. The comparative RNA Web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinform. 3:2.
-
(2002)
BMC Bioinform.
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
-
4
-
-
0000122573
-
PHYLIP-Phylogeny inference package (version 3.2)
-
Felsenstein J. 1989. PHYLIP-Phylogeny inference package (version 3.2). Cladistics 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
5
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
-
(2003)
Syst. Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
6
-
-
84990479742
-
An efficient heuristic procedure for partitioning graphs
-
Kernigham BW, Lin S. 1970. An efficient heuristic procedure for partitioning graphs. Bell Syst. Tech. J. 49:291-307.
-
(1970)
Bell Syst. Tech. J
, vol.49
, pp. 291-307
-
-
Kernigham, B.W.1
Lin, S.2
-
7
-
-
25444503758
-
Graphical representation of ribosomal R.N.A probe accessibility data using A.R.B software package
-
Kumar Y, Westram R, Behrens S, Fuchs B, Gloeckner FO, et al, 2005. Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinform. 6:61.
-
(2005)
B.M.C Bioinform
, vol.6
, pp. 61
-
-
Kumar, Y.1
Westram, R.2
Behrens, S.3
Fuchs, B.4
Gloeckner, F.O.5
-
8
-
-
33746357860
-
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package
-
Kumar Y, Westram R, Kipfer P, Meier H, Ludwig W. 2006. Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package. Bioinformatics 7:240-251.
-
(2006)
Bioinformatics
, vol.7
, pp. 240-251
-
-
Kumar, Y.1
Westram, R.2
Kipfer, P.3
Meier, H.4
Ludwig, W.5
-
9
-
-
0002803581
-
Overview: A phylogenetic backbone AND taxonomic framework for prokaryotic systematics
-
Garrity G. M. ed. Bergey's Manual of Systematic Bacteriology 2nd ed. 1. New York: Springer
-
Ludwig W, Klenk HP 2001. Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systematics. In Garrity, G. M. ed. Bergey's Manual of Systematic Bacteriology, 2nd ed. Vol. 1. New York: Springer, pp. 49-65.
-
(2001)
, pp. 49-65
-
-
Ludwig, W.1
Klenk, H.P.2
-
10
-
-
84886160852
-
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, et al. 2004.
-
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
-
11
-
-
2542523843
-
ARB: A software environment for sequence data
-
ARB: A software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
-
12
-
-
83155170411
-
Bioinformatics and web resources for the microbial ecologist
-
Osborn AM, Smith CJ. eds. Abingdon: Taylor and Francis
-
Ludwig W. 2005. Bioinformatics and web resources for the microbial ecologist. In Osborn AM, Smith CJ. eds. Molecular Microbial Ecology. Abingdon: Taylor and Francis, pp. 345-371.
-
(2005)
Molecular Microbial Ecology
, pp. 345-371
-
-
Ludwig, W.1
-
13
-
-
77951246352
-
-
ed. Bergey's Manual of Systematic Bacteriology, 2nd ed, 3. New York: Springer
-
Ludwig W, Schleifer KH, Whitman WB. 2009. Revised road map to the phylum Firmicutes. In Whitman WB, ed. Bergey's Manual of Systematic Bacteriology, 2nd ed, Vol. 3. New York: Springer, pp. 1-13.
-
(2009)
Revised road map to the phylum Firmicutes. In Whitman WB
, pp. 1-13
-
-
Ludwig, W.1
Schleifer, K.H.2
Whitman, W.B.3
-
14
-
-
52149101801
-
A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes
-
Peplies J, Kottmann R, Ludwig W, Glöckner FO. 2008. A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst. Appl. Microbiol. 31:251-257.
-
(2008)
Syst. Appl. Microbiol
, vol.31
, pp. 251-257
-
-
Peplies, J.1
Kottmann, R.2
Ludwig, W.3
Glöckner, F.O.4
-
15
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs B M, Ludwig W, et al. 2007. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
-
16
-
-
72949107142
-
Introducing mothur: Open source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott S L, Ryabin T, Hall JR, Hartmann M, et al. 2009. Introducing mothur: Open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
18
-
-
0036205377
-
TREE-PUZZLE Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
-
Bioinformatics
, vol.18
, pp. 502-504
-
-
-
19
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
20
-
-
0001311362
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment
-
Thompson JD, Higgins DG, Gibson DJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
-
(1994)
Comput. Appl. Biosci
, vol.8
, pp. 189-191
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, D.J.3
-
21
-
-
0036786684
-
All-atom homology model of the Escherichia coli 30S ribosomal subunit
-
Tung C S, Joseph S, Sanbonmatsu KY. 2002. All-atom homology model of the Escherichia coli 30S ribosomal subunit. Nat. Struct. Biol. 9:750-755.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 750-755
-
-
Tung, C.S.1
Joseph, S.2
Sanbonmatsu, K.Y.3
|