Prediction and characterization of the linear IgE epitopes for the major soybean allergen β-conglycinin using immunoinformatics tools

Food and Chemical Toxicology

Volumn 56, Issue , 2013, Pages 254-260

  Sun, Xiulan ^a   Shan, Xiaohong ^a   Yan, Zihe ^b   Zhang, Yinzhi ^a   Guan, Lu ^a  

^a JIANGNAN UNIVERSITY   (China)

^b WUXI NO 2 PEOPLE S HOSPITAL   (China)

Author keywords

subunit conglycinin; Epitope; Immunoinformatics prediction; Soybean allergen

Indexed keywords

BETA CONGLYCININ; EPITOPE; FOOD ALLERGEN; IMMUNOGLOBULIN E; UNCLASSIFIED DRUG;

ADULT; AMINO ACID SEQUENCE; ANTIGENICITY; ARTICLE; BINDING AFFINITY; BIOINFORMATICS; CIRCULAR DICHROISM; CLINICAL ARTICLE; CLINICAL FEATURE; CONTROLLED STUDY; DISEASE CLASSIFICATION; DISEASE SEVERITY; FEMALE; FOOD ALLERGY; HUMAN; HYDROPHILICITY; IMMUNOGLOBULIN BLOOD LEVEL; IMMUNOINFORMATICS; MALE; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; PROTEIN PURIFICATION; PROTEIN SECONDARY STRUCTURE; SOLID PHASE SYNTHESIS; SOYBEAN;

ADULT; ALLERGENS; AMINO ACID SEQUENCE; ANTIGENS, PLANT; EPITOPES; FEMALE; GLOBULINS; HUMANS; HYPERSENSITIVITY; IMMUNOBLOTTING; IMMUNOGLOBULIN E; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; REPRODUCIBILITY OF RESULTS; SEED STORAGE PROTEINS; SOLID-PHASE SYNTHESIS TECHNIQUES; SOYBEAN PROTEINS; SOYBEANS;

GLYCINE MAX;

EID: 84875510895     PISSN: 02786915     EISSN: 18736351     Source Type: Journal    
DOI: 10.1016/j.fct.2013.02.014     Document Type: Article

References (30)

1. Astwood J.D., Leach J.N., Fuchs R.L. Stability of food allergens to digestion in vitro. Nature Biotechnology 1996, 14:1269-1273.
2. Bao Y.D., Quan Y.X., Li H.K. Preparation of constituent subunits of conglycinin by chromatogram method and their structure properties. Chinese Journal of Analytical Chemistry 2010, 38(6):877-880.
3. Barbara K.B.&W., Thomas H., Joseph S., Diana M., Guliana Z., Claudio O., Morten O., Lars K.P., Stefan V., Carsten B.J. Clinical characteristics of soybean allergy in Europe: a double-blind placebo-controlled food challenge study. Journal of Allergy and Clinical Immunology 2007, 119:1489-1496.
4. Bnado N., Tsuji H., Yamanishi R. Identification of the glycosylation site of a major soybean allergen, GlymBd30K. Bioscience Biotechnology and Biochemistry 1996, 60(2):347-348.
5. Chou P.Y., Fasman G.D. Empirical predictions of protein conformation. Annual Review of Biochemistry. 1978, 47:251-276. 10.1146/annurev.bi.47.070178.001343.
6. Emini E.A., Hughes J.V., Perlow D.S., Boger J. Induction of hepatitis A virus neutralizing antibody by a virus-specific synthetic peptide. Journal of Virology 1985, 55(3):836-839.
7. Endres J. Soy protein products-characteristics, nutritional aspects, and utilization 2001, AOCS Publication.
8. Errahali Y., Morisset M., Moneret-Vautrin D.-A., Kanny G., Metche M., Nicolas J.-P., Frémont S. Allergen in soy oils. Allergen 2002, 57(7):648-649.
9. Food and Agriculture Organization of the United Nations (F.A.O.), 1995. Report of the FAO Technical Committee on Food Allergies, Rome, Italy, November 13 and 14.
10. Fu C.J., Jez J.M., Kerley M.S., Allee G.L., Krishnan H.B. Identification, characterization, epitope mapping, and three-dimensional modeling of the r-Subunit of â-Conglycinin of soybean, a potential Allergen for young pigs. Journal of Agricultural and Food Chemistry 2007, 55:4014-4020.
11. Groot A.S., Sbai H., Aubin C., Mc Murry J., Martin W. Immunoinformatic: mining genomes for vaccine components. Immunology and Cell Biology 2002, 80:255-269.
12. Holzhauser T., Wackermann O., Ballmer-Weber B.K., Bindslev-Jensen C., Scibilia J., Perono-Garoffo L., Utsumi S., Poulsen L.K., Vieths S. Soybean (Glycine max) allergy in Europe: Gly m 5 (beta-conglycinin) and Gly m 6 (glycinin) are potential diagnostic markers for severe allergic reactions to soy. Journal of Allergy and Clinical Immunology 2009, 123(2):452-458.
13. Hopp T.P., Woods K.R. Prediction of protein antigenic determinants from amino acid sequences. Proceedings of the National Academy of Sciences of the United States of America 1981, 78(6):3824-3828.
14. Hosoyma H., Obata A., Bando N. Epitope analysis of soybean major allergen Gly m Bd 30K recognized by the mouse monoclonal antibody using overlapping peptides. Bioscience Biotechnology and Biochemistry 1996, 60(7):1181-1182.
15. Jameson B.A., Wolf H. The antigenic index: a novel algorithm for predicting antigenic determinants. Computer Application in Biosciences: CABIOS 1988, 4(1):181-186.
16. Karplus P.A., Schulz G.E. Prediction of chain flexibility in proteins: a tool for the selection of peptide antigens. Naturwissenschaften 1985, 72:212-213.
17. Kolaskar A., Tongaonkar P. A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Letters 1990, 276(1-2):172-174.
18. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 1982, 157(1):105-132.
19. Liu, B., Teng, D., Yang, Y., Wang, X., Wang, J., 2011. Development of a competitive ELISA for the detection of soybean alpha subunit of beta-conglycinin. Process Biochemistry (0).
20. Meizhu L., Aizhen L., Zhenhua F., Zhanglan Y. Analysis about allergen detection of serum in allergic dermatitis patients. Laboratory Medicine 2007, 22(2):122-124.
21. Modrow S., Hahn B.H., Shaw G.M., Gallo R.C., Wong-Staal F., Wolf H. Computer-assisted analysis of envelope protein sequences of seven human immunodeficiency virus isolates: prediction of antigenic epitopes in conserved and variable regions. Journal of Virology 1987, 61(2):570-578.
22. Ogwa T., Bando N., Tsuji H. Investigations of the IgE-binding proteins in soybeans by immunoblotting with sera from soybean-sensitive patients with atopic dermatitis. Journal of Nutritional Science and Vitaminology 1991, 37:555-565.
23. Saha S., Raghava G.P.S. Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 2006, 65:40-48.
24. Verma A.K., Kumar S., Das M., Dwivedi P.D. A comprehensive review of legume allergy. Clinical Reviews in Allergy & Immunology 2012.
25. Weiqi, Z. 2003. Structure and functional characteristics of soybean protein. Cereal and Food Industry (2).
26. Wilson S., Blaschek K., Mejia E.G. Allergenic proteins in soybean: processing and reduction of P34 allergenicity. Nutrition Reviews 2005, 63(2):47-58.
27. Wu Y.-M., Guan R.-X., Liu Z.-X., Li R.-Z., Chang R.-Z., Qiu L.-J. Synthesis and degradation of the major allergens in developing and germinating soybean seed. Journal of Integrative Plant Biology 2012, 54(1):4-14.
28. Yang X.F., Yu X.L. An introduction to epitope prediction methods and software. Reviews in Medical Virology 2008, 19:77-96.
29. Zheng S.G., Cao, Sun Z.W. Isolation and purification of native glycinin subunits. Chinese Journal of Oil Crop Sciences 2009, 31(1):75-80.
30. Zheng L.-N., Lin H., Pawar R., Li Z.-X., Li M.-H. Mapping IgE binding epitopes of major shrimp (Penaeus monodon) allergen with immunoinformatics tools. Food and Chemical Toxicology 2011, 49(11):2954-2960.