Transcriptomic Analysis of Streptomyces coelicolor Differentiation in Solid Sporulating Cultures: First Compartmentalized and Second Multinucleated Mycelia Have Different and Distinctive Transcriptomes

PLoS ONE

Volumn 8, Issue 3, 2013, Pages

  Yagüe, Paula ^a   Rodríguez García, Antonio ^b   López García, María T ^a   Martín, Juan F ^b   Rioseras, Beatriz ^a   Sánchez, Jesús ^a   Manteca, Angel ^a  

^a DEPARTAMENTO DE BIOQUÍMICA Y BIOLOGÍA MOLECULAR   (Spain)

^b Institute of Biotechnology INBIOTEC Parque Científico de León   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINORHODINE; ANTIBIOTIC AGENT; CREATINE KINASE; GEOSMIN; PRODIGIOSIN; REGULATOR PROTEIN; TRANSCRIPTOME; UNCLASSIFIED DRUG; UNDECYLPRODIGIOSIN;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; CONTROLLED STUDY; DEVELOPMENTAL GENE; DEVELOPMENTAL STAGE; GENE EXPRESSION; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; MICROARRAY ANALYSIS; MYCELIUM; NONHUMAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ISOLATION; SPOROGENESIS; STREPTOMYCES COELICOLOR; TRANSCRIPTOMICS;

GENE EXPRESSION REGULATION, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, BACTERIAL; SIGNAL TRANSDUCTION; STREPTOMYCES COELICOLOR; TRANSCRIPTOME;

MYCELIUM (GENUS); STREPTOMYCES; STREPTOMYCES COELICOLOR; STREPTOMYCINEAE;

EID: 84875483830     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060665     Document Type: Article

References (32)

1. Flärdh K, Buttner MJ, (2009) Streptomyces morphogenetics, dissecting differentiation in a filamentous bacterium. Nat Rev Microbiol 7: 36-49.
2. Manteca A, Fernández M, Sánchez J, (2006) Cytological and biochemical evidence for an early cell dismantling event in solid cultures of Streptomyces antibioticus. Res. Microbiol 157: 143-152.
3. Manteca A, Álvarez R, Salazar N, Yagüe P, Sánchez J, (2008) Mycelium differentiation and antibiotic production in liquid cultures of Streptomyces coelicolor. Appl Environ Microbiol 74: 3877-3886.
4. Manteca A, Sánchez J, (2009) Streptomyces development in colonies and soils. Appl Environ Microbiol 75: 2920-2924.
5. Manteca A, Sánchez J, Jung HR, Schwämmle V, Jensen ON, (2010) Quantitative proteomic analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hyphae differentiation. Mol Cell Proteomics 9: 1423-1436.
6. Manteca A, Jung HR, Schwämmle V, Jensen ON, Sánchez J, (2010) Quantitative proteome analysis of Streptomyces coelicolor nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures. J Proteome Res 9: 4801-4811.
7. Claessen D, de Jong W, Dijkhuizen L, Wösten HA, (2006) Regulation of Streptomyces development, reach for the sky!. Trends Microbiol 14: 313-319.
8. Hirsch CF, Ensign JC, (1976) Nutritionally defined conditions for germination of Streptomyces viridochromogenes spores. J Bacteriol 126: 13-23.
9. Hardisson C, Manzanal MB, Salas JA, Suárez JE, (1978) Fine structure, physiology and biochemistry of arthrospore germination in Streptomyces antibioticus. J Gen Microbiol 105: 203-214.
10. Guijarro JA, Suarez JE, Salas JA, Hardisson C, (1983) Pattern of protein degradation during germination of Streptomyces antibioticus spores. Can J Microbiol 29: 637-643.
11. Mikulík K, Janda I, Weiser J, Stastná J, Jiránová A, (1984) RNA and ribosomal protein patterns during aerial spore germination in Streptomyces granaticolor. Eur J Biochem 145: 381-388.
12. Strakova E, Bobek J, Zikova A, Rehulka P, Benada O, et al. (2013) Systems Insight into the Spore Germination of Streptomyces coelicolor. J Proteome Res. 12: 525-536.
13. Grund AD, Ensign JC, (1985) Properties of the germination inhibitor of Streptomyces viridochromogenes spores. J Gen Microbiol 131: 833-847.
14. Piette A, Derouaux A, Gerkens P, Noens EE, Mazzucchelli G, et al. (2005) From dormant to germinating spores of Streptomyces coelicolor A3(2): new perspectives from the crp null mutant. J Proteome Res 4: 1699-1708.
15. de Jong W, Manteca A, Sánchez J, Bucca G, Smith CP, et al. (2009) NepA is a structural cell wall protein involved in maintenance of spore dormancy in Streptomyces coelicolor. Mol Microbiol 71: 1591-1603.
16. Noens EE, Mersinias V, Willemse J, Traag BA, Laing E, et al. (2007) Loss of the controlled localization of growth stage-specific cell-wall synthesis pleiotropically affects developmental gene expression in an ssgA mutant of Streptomyces coelicolor. Mol Microbiol 64: 1244-1259.
17. Novella IS, Barbes C, Sánchez J, (1992) Sporulation of Streptomyces antibioticus ETHZ 7451 in liquid culture. Can. J Microbiol 38: 769-773.
18. Bucca G, Laing E, Mersinias V, Allenby N, Hurd D, et al. (2009) Development and application of versatile high density microarrays for genome-wide analysis of Streptomyces coelicolor, characterization of the HspR regulon. Genome Biol 10: R5.
19. Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl Genet Mol Biol 3Article 3.
20. Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real time quantitative PCR and the 2-ΔΔCt Method. Methods 25: 402-408.
21. Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, et al. (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417: 141-147.
22. Gottelt M, Kol S, Gómez-Escribano JP, Bibb, Takano E, (2010) Deletion of a regulatory gene within the cpk gene cluster reveals novel antibacterial activity in Streptomyces coelicolor A3(2). Microbiology 156: 2343-2353.
23. Pawlik K, Kotowska M, Kolesiński P, (2010) Streptomyces coelicolor A3(2) produces a new yellow pigment associated with the polyketide synthase Cpk. J. Mol. Microbiol Biotechnol 19: 147-151.
24. Gómez-Escribano JP, Song L, Fox DJ, Yeo V, Bibb MJ, et al. (2012) Structure and biosynthesis of the unusual polyketide alkaloid coelimycin P1, a metabolic product of the cpk gene cluster of Streptomyces coelicolor M145. Chemical Science 3: 2716-2720.
25. Jiang J, He X, Cane DE, (2007) Biosynthesis of the earthy odorant geosmin by a bifunctional Streptomyces coelicolor enzyme. Nat Chem Biol 3: 711-715.
26. Jayapal KP, Philp RJ, Kok YJ, Yap MG, Sherman DH, et al. (2008) Uncovering genes with divergent mRNAprotein dynamics in Streptomyces coelicolor. PLoS One 3: e2097.
27. Nieselt K, Battke F, Herbig A, Bruheim P, Wentzel A, et al. (2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC genomics 11: 10.
28. Gatewood M, Bralley P, Weil MR, Jones GH, (2012) RNA-Seq and RNA immunoprecipitation analyses of the transcriptome of Streptomyces coelicolor identify substrates for RNase III. J. Bacteriol 194: 2228-2237.
29. Hesketh A, Bucca G, Laing E, Flett F, Hotchkiss G, et al. (2007) New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures. BMC Genomics 8: 261.
30. Hesketh A, Chen WJ, Ryding J, Chang S, Bibb M, (2007) The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2). Genome Biol 8: R161.
31. Aínsa JA, Bird N, Ryding NJ, Findlay KC, Chater KF, (2010) The complex whiJ locus mediates environmentally sensitive repression of development of Streptomyces coelicolor A3(2). Antonie Van Leeuwenhoek 98: 225-236.
32. Ou X, Zhang B, Zhang L, Dong K, Liu C, et al. (2008) SarA influences the sporulation and secondary metabolism in Streptomyces coelicolor M145. Acta Biochim Biophys Sin (Shanghai) 40: 877-882.