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Volumn 2, Issue JULY, 2011, Pages

Corrigendum: Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria [Front. Microbio., 2, (2011) 147] DOI: 10.3389/fmicb.2011.00147;Regulation of multiple carbon monoxide consumption pathways in anaerobic bacteria

Author keywords

Carbon monoxide; Carbon monoxide dehydrogenase; Carboxydothermus hydrogenoformans; Carboxydotrophs; Cooa; Hydrogenogens; Thermophiles; CooA

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); CARBOXYDOTHERMUS HYDROGENOFORMANS;

EID: 84875481157     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2018.01016     Document Type: Erratum
Times cited : (19)

References (49)
  • 1
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 2
    • 77955297300 scopus 로고    scopus 로고
    • Complete genome sequence of the electricity-producing Thermincola potens strain JR
    • Byrne-Bailey, K. G., Wrighton, K. C., Melnyk, R. A., Agbo, P., Hazen, T. C., and Coates, J. D. (2010). Complete genome sequence of the electricity-producing "Thermincola potens" strain JR. J. Bacteriol. 192, 4078-4079.
    • (2010) J. Bacteriol. , vol.192 , pp. 4078-4079
    • Byrne-Bailey, K.G.1    Wrighton, K.C.2    Melnyk, R.A.3    Agbo, P.4    Hazen, T.C.5    Coates, J.D.6
  • 4
    • 23944461056 scopus 로고    scopus 로고
    • Analysis of the distribution and diversity in recent Hawaiian volcanic deposits of a putative carbon monoxide dehydrogenase large subunit gene
    • Dunfield, K. E., and King, G. M. (2005). Analysis of the distribution and diversity in recent Hawaiian volcanic deposits of a putative carbon monoxide dehydrogenase large subunit gene. Environ. Microbiol. 7, 1405-1412.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1405-1412
    • Dunfield, K.E.1    King, G.M.2
  • 6
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. (2004b). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximumlikelihood phylogenies: assessing the performance of PhyML 3
    • Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2003). New algorithms and methods to estimate maximumlikelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321.
    • (2003) 0. Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 11
    • 0030051489 scopus 로고    scopus 로고
    • Characterization of a CO-responsive transcriptional activator from Rhodospirillum rubrum
    • He, Y., Shelver, D., Kerby, R. L., and Roberts, G. P. (1996). Characterization of a CO-responsive transcriptional activator from Rhodospirillum rubrum. J. Biol. Chem. 271, 120-123.
    • (1996) J. Biol. Chem. , vol.271 , pp. 120-123
    • He, Y.1    Shelver, D.2    Kerby, R.L.3    Roberts, G.P.4
  • 12
    • 10444237340 scopus 로고    scopus 로고
    • Novel physiological features of Carboxydothermus hydrogenoformans and Thermoterrabacterium ferrireducens
    • Henstra, A. M., and Stams, A. J. (2004). Novel physiological features of Carboxydothermus hydrogenoformans and Thermoterrabacterium ferrireducens. Appl. Environ. Microbiol. 70, 7236-7240.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7236-7240
    • Henstra, A.M.1    Stams, A.J.2
  • 13
    • 0003043542 scopus 로고
    • The possible effects of the aggregation of the molecules of haemoglobin on its dissociation curves
    • Hill, A. V. (1910). The possible effects of the aggregation of the molecules of haemoglobin on its dissociation curves. J. Physiol. 40, 4-7.
    • (1910) J. Physiol. , vol.40 , pp. 4-7
    • Hill, A.V.1
  • 14
    • 0026599072 scopus 로고
    • The structural genes encoding CO dehydrogenase subunits (cox L, M and S) in Pseudomonas carboxydovorans OM5 reside on plasmid pHCG3 and are, with the exception of Streptomyces thermoautotrophicus,conserved in carboxydotrophic bacteria
    • Hugendieck, I., and Meyer, O. (1992). The structural genes encoding CO dehydrogenase subunits (cox L, M and S) in Pseudomonas carboxydovorans OM5 reside on plasmid pHCG3 and are, with the exception of Streptomyces thermoautotrophicus,conserved in carboxydotrophic bacteria. Arch. Microbiol. 157, 301-304.
    • (1992) Arch. Microbiol. , vol.157 , pp. 301-304
    • Hugendieck, I.1    Meyer, O.2
  • 15
    • 35348909635 scopus 로고    scopus 로고
    • Mechanism of the CO-sensing heme protein CooA: new insights from the truncated heme domain and UVRR spectroscopy
    • Ibrahim, M., Kuchinskas, M., Youn, H., Kerby, R. L., Roberts, G. P., Poulos, T. L., and Spiro, T. G. (2007). Mechanism of the CO-sensing heme protein CooA: new insights from the truncated heme domain and UVRR spectroscopy. J. Inorg. Biochem. 101, 1776-1785.
    • (2007) J. Inorg. Biochem. , vol.101 , pp. 1776-1785
    • Ibrahim, M.1    Kuchinskas, M.2    Youn, H.3    Kerby, R.L.4    Roberts, G.P.5    Poulos, T.L.6    Spiro, T.G.7
  • 16
    • 0026649571 scopus 로고
    • Genetic and physiological characterization of the Rhodospirillum rubrum carbon monoxide dehydrogenase system
    • Kerby, R. L., Hong, S. S., Ensign, S. A., Coppoc, L. J., Ludden, P. W., and Roberts, G. P. (1992). Genetic and physiological characterization of the Rhodospirillum rubrum carbon monoxide dehydrogenase system. J. Bacteriol. 174, 5284-5294.
    • (1992) J. Bacteriol. , vol.174 , pp. 5284-5294
    • Kerby, R.L.1    Hong, S.S.2    Ensign, S.A.3    Coppoc, L.J.4    Ludden, P.W.5    Roberts, G.P.6
  • 17
    • 0028925554 scopus 로고
    • Carbon monoxidedependent growth of Rhodospirillum rubrum
    • Kerby, R. L., Ludden, P. W., and Roberts, G. P. (1995). Carbon monoxidedependent growth of Rhodospirillum rubrum. J. Bacteriol. 177,2241-2244.
    • (1995) J. Bacteriol. , vol.177 , pp. 2241-2244
    • Kerby, R.L.1    Ludden, P.W.2    Roberts, G.P.3
  • 19
    • 0038492780 scopus 로고    scopus 로고
    • Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits
    • King, G. M. (2003a). Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits. Appl. Environ. Microbiol. 69, 4067-4075.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4067-4075
    • King, G.M.1
  • 20
    • 2142693754 scopus 로고    scopus 로고
    • Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity
    • King, G. M. (2003b). Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl. Environ. Microbiol. 69, 7257-7265.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7257-7265
    • King, G.M.1
  • 21
    • 33846476676 scopus 로고    scopus 로고
    • Distribution, diversity and ecology of aerobic CO-oxidizing bacteria
    • King, G. M., and Weber, C. F. (2007). Distribution, diversity and ecology of aerobic CO-oxidizing bacteria. Nat. Rev. Microbiol. 5, 107-118.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 107-118
    • King, G.M.1    Weber, C.F.2
  • 22
    • 0024352761 scopus 로고
    • Homology and distribution of CO dehydrogenase structural genes in carboxydotrophic bacteria
    • Kraut, M., Hugendieck, I., Herwig, S., and Meyer, O. (1989). Homology and distribution of CO dehydrogenase structural genes in carboxydotrophic bacteria. Arch. Microbiol. 152, 335-341.
    • (1989) Arch. Microbiol. , vol.152 , pp. 335-341
    • Kraut, M.1    Hugendieck, I.2    Herwig, S.3    Meyer, O.4
  • 26
    • 0020653833 scopus 로고
    • Biology of aerobic carbon monoxide-oxidizing bacteria
    • Meyer, O., and Schlegel, H. G. (1983). Biology of aerobic carbon monoxide-oxidizing bacteria. Annu. Rev. Microbiol. 37, 277-310.
    • (1983) Annu. Rev. Microbiol. , vol.37 , pp. 277-310
    • Meyer, O.1    Schlegel, H.G.2
  • 27
    • 0026327185 scopus 로고
    • The primary structure of the subunits of carbon monoxide dehydrogenase/acetyl-CoA synthase from Clostridium thermoaceticum
    • Morton, T. A., Runquist, J. A., Ragsdale, S. W., Shanmugasundaram, T., Wood, H. G., and Ljungdahl, L. G. (1991). The primary structure of the subunits of carbon monoxide dehydrogenase/acetyl-CoA synthase from Clostridium thermoaceticum. J. Biol. Chem. 266, 23824-23828.
    • (1991) J. Biol. Chem. , vol.266 , pp. 23824-23828
    • Morton, T.A.1    Runquist, J.A.2    Ragsdale, S.W.3    Shanmugasundaram, T.4    Wood, H.G.5    Ljungdahl, L.G.6
  • 28
    • 23844490527 scopus 로고    scopus 로고
    • Carbon monoxide conversion by thermophilic sulfate-reducing bacteria in pure culture and in co-culture with Carboxydothermus hydrogenoformans
    • Parshina, S. N., Kijlstra, S., Henstra, A. M., Sipma, J., Plugge, C. M., and Stams, A. J. (2005). Carbon monoxide conversion by thermophilic sulfate-reducing bacteria in pure culture and in co-culture with Carboxydothermus hydrogenoformans. Appl. Microbiol. Biotechnol. 68, 390-396.
    • (2005) Appl. Microbiol. Biotechnol. , vol.68 , pp. 390-396
    • Parshina, S.N.1    Kijlstra, S.2    Henstra, A.M.3    Sipma, J.4    Plugge, C.M.5    Stams, A.J.6
  • 30
    • 41349119857 scopus 로고    scopus 로고
    • Enzymology of the Wood-Ljungdahl pathway of acetogenesis
    • Ragsdale, S. W. (2008). Enzymology of the Wood-Ljungdahl pathway of acetogenesis. Ann. N. Y. Acad. Sci. 1125, 129-136.
    • (2008) Ann. N. Y. Acad. Sci. , vol.1125 , pp. 129-136
    • Ragsdale, S.W.1
  • 32
    • 10444220187 scopus 로고    scopus 로고
    • CooA, a paradigm for gas sensing regulatory proteins
    • Roberts, G. P., Kerby, R. L., Youn, H., and Conrad, M. (2005). CooA, a paradigm for gas sensing regulatory proteins. J. Inorg. Biochem. 99, 280-292.
    • (2005) J. Inorg. Biochem. , vol.99 , pp. 280-292
    • Roberts, G.P.1    Kerby, R.L.2    Youn, H.3    Conrad, M.4
  • 33
    • 0035223846 scopus 로고    scopus 로고
    • CooA: a hemecontaining regulatory protein that serves as a specific sensor of both carbon monoxide and redox state
    • Roberts, G. P., Thorsteinsson, M. V., Kerby, R. L., Lanzilotta, W. N., and Poulos, T. (2001). CooA: a hemecontaining regulatory protein that serves as a specific sensor of both carbon monoxide and redox state. Prog. Nucleic Acid Res. Mol. Biol. 67, 35-63.
    • (2001) Prog. Nucleic Acid Res. Mol. Biol. , vol.67 , pp. 35-63
    • Roberts, G.P.1    Thorsteinsson, M.V.2    Kerby, R.L.3    Lanzilotta, W.N.4    Poulos, T.5
  • 34
    • 0028968003 scopus 로고
    • Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans
    • Schubel, U., Kraut, M., Morsdorf, G., and Meyer, O. (1995). Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans. J. Bacteriol. 177, 2197-2203.
    • (1995) J. Bacteriol. , vol.177 , pp. 2197-2203
    • Schubel, U.1    Kraut, M.2    Morsdorf, G.3    Meyer, O.4
  • 35
    • 0028963922 scopus 로고
    • Carbon monoxide-induced activation of gene expression in Rhodospirillum rubrum requires the product of cooA, a member of the cyclic AMP receptor protein family of transcriptional regulators
    • Shelver, D., Kerby, R. L., He, Y., and Roberts, G. P. (1995). Carbon monoxide-induced activation of gene expression in Rhodospirillum rubrum requires the product of cooA, a member of the cyclic AMP receptor protein family of transcriptional regulators. J. Bacteriol. 177, 2157-2163.
    • (1995) J. Bacteriol. , vol.177 , pp. 2157-2163
    • Shelver, D.1    Kerby, R.L.2    He, Y.3    Roberts, G.P.4
  • 36
    • 0030856066 scopus 로고    scopus 로고
    • CooA, a COsensing transcription factor from Rhodospirillum rubrum, is a CObinding heme protein
    • Shelver, D., Kerby, R. L., He, Y., and Roberts, G. P. (1997). CooA, a COsensing transcription factor from Rhodospirillum rubrum, is a CObinding heme protein. Proc. Natl. Acad. Sci. U.S.A. 94, 11216-11220.
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 11216-11220
    • Shelver, D.1    Kerby, R.L.2    He, Y.3    Roberts, G.P.4
  • 38
    • 38449092607 scopus 로고    scopus 로고
    • Radioisotopic assays of rates of carbon monoxide conversion by anaerobic thermophilic prokaryotes
    • Slepova, T.V., Rusanov, I. I., Sokolova, T. G., Bonch-Osmolovskaia, E. A., and Pimenov, N. V. (2007). Radioisotopic assays of rates of carbon monoxide conversion by anaerobic thermophilic prokaryotes. Mikrobiologiia 76, 594-601.
    • (2007) Mikrobiologiia , vol.76 , pp. 594-601
    • Slepova, T.V.1    Rusanov, I.I.2    Sokolova, T.G.3    Bonch-Osmolovskaia, E.A.4    Pimenov, N.V.5
  • 39
    • 0030999171 scopus 로고    scopus 로고
    • Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring
    • Slobodkin, A., Reysenbach, A. L., Strutz, N., Dreier, M., and Wiegel, J. (1997). Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring. Int. J. Syst. Bacteriol. 47, 541-547.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 541-547
    • Slobodkin, A.1    Reysenbach, A.L.2    Strutz, N.3    Dreier, M.4    Wiegel, J.5
  • 40
    • 33749998112 scopus 로고    scopus 로고
    • Reclassification of Thermoterrabacterium ferrireducens as Carboxydothermus ferrireducens comb. nov., and emended description of the genus Carboxydothermus
    • Slobodkin, A. I., Sokolova, T. G., Lysenko,A. M.,andWiegel,J. (2006). Reclassification of Thermoterrabacterium ferrireducens as Carboxydothermus ferrireducens comb. nov., and emended description of the genus Carboxydothermus. Int. J. Syst. Evol. Microbiol. 56, 2349-2351.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2349-2351
    • Slobodkin, A.I.1    Sokolova, T.G.2    Lysenko, A.M.3    Wiegel, J.4
  • 41
    • 9744277455 scopus 로고    scopus 로고
    • Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic thermophilic, carbon-monoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park
    • Sokolova,T. G.,Gonzalez,J. M.,Kostrikina, N. A., Chernyh, N. A., Slepova, T. V., Bonch-Osmolovskaya, E. A., and Robb, F. T. (2004a). Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbon-monoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park. Int. J. Syst. Evol. Microbiol. 54, 2353-2359.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 2353-2359
    • Sokolova, T.G.1    Gonzalez, J.M.2    Kostrikina, N.A.3    Chernyh, N.A.4    Slepova, T.V.5    Bonch-Osmolovskaya, E.A.6    Robb, F.T.7
  • 42
    • 9744254931 scopus 로고    scopus 로고
    • The first evidence of anaerobic CO oxidation coupled with H2 production by a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent
    • Sokolova, T. G., Jeanthon, C., Kostrikina, N. A., Chernyh, N. A., Lebedinsky, A. V., Stackebrandt, E., and Bonch-Osmolovskaya, E. A. (2004b). The first evidence of anaerobic CO oxidation coupled with H2 production by a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Extremophiles 8, 317-323.
    • (2004) Extremophiles , vol.8 , pp. 317-323
    • Sokolova, T.G.1    Jeanthon, C.2    Kostrikina, N.A.3    Chernyh, N.A.4    Lebedinsky, A.V.5    Stackebrandt, E.6    Bonch-Osmolovskaya, E.A.7
  • 44
    • 0025894923 scopus 로고
    • Carboxydothermus hydrogenoformans gen. nov., sp. nov., a COutilizing thermophilic anaerobic bacterium from hydrothermal environments of Kunashir Island. Syst. Appl. Microbiol
    • Svetlitchnyi, V., Sokolova, T. G., Gerhardt, M., Ringpfeil, M., Kostrikina, N. A., and Ga, Z. (1991). Carboxydothermus hydrogenoformans gen. nov., sp. nov., a COutilizing thermophilic anaerobic bacterium from hydrothermal environments of Kunashir Island. Syst. Appl. Microbiol. 14, 254-260.
    • (1991) , vol.14 , pp. 254-260
    • Svetlitchnyi, V.1    Sokolova, T.G.2    Gerhardt, M.3    Ringpfeil, M.4    Kostrikina, N.A.5    Ga, Z.6
  • 45
    • 65349113034 scopus 로고    scopus 로고
    • Techtmann, S. M., Colman, A. S., and Robb, F. T. (2009). That which does not kill us only makes us stronger the role of carbon monoxide in thermophilic microbial consortia. Environ. Microbiol. 11, 1027-1037.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1027-1037
    • Techtmann, S.M.1    Colman, A.S.2    Robb, F.T.3
  • 46
    • 1342293305 scopus 로고
    • Anaerobic growth of a Rhodopseudomonas species in the dark with carbon monoxide as sole carbon and energy substrate
    • Uffen, R. L. (1976). Anaerobic growth of a Rhodopseudomonas species in the dark with carbon monoxide as sole carbon and energy substrate. Proc. Natl. Acad. Sci. U.S.A. 73, 3298-3302.
    • (1976) Proc. Natl. Acad. Sci. U. S. A. , vol.73 , pp. 3298-3302
    • Uffen, R.L.1
  • 49
    • 1342346631 scopus 로고    scopus 로고
    • Functionally critical elements of CooArelated CO sensors
    • Youn, H., Kerby, R. L., Conrad, M., and Roberts, G. P. (2004). Functionally critical elements of CooArelated CO sensors. J. Bacteriol. 186, 1320-1329.
    • (2004) J. Bacteriol. , vol.186 , pp. 1320-1329
    • Youn, H.1    Kerby, R.L.2    Conrad, M.3    Roberts, G.P.4


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