Mechanism of the CO-sensing heme protein CooA: New insights from the truncated heme domain and UVRR spectroscopy

Journal of Inorganic Biochemistry

Volumn 101, Issue 11-12, 2007, Pages 1776-1785

  Ibrahim, Mohammed ^a   Kuchinskas, Michael ^b   Youn, Hwan ^c   Kerby, Robert L ^c   Roberts, Gary P ^c   Poulos, Thomas L ^b   Spiro, Thomas G ^a  

^a PRINCETON UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Activation mechanism; Carbon monoxide; CooA; UV resonance Raman spectroscopy

Indexed keywords

CARBON MONOXIDE; GLUTAMIC ACID; GLUTAMINE; HEMOPROTEIN; PROTEIN COOA; TRYPTOPHAN; TYROSINE; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; DISSOCIATION; GENE EXPRESSION; HYDROGEN BOND; PHOTOLYSIS; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; RAMAN SPECTROMETRY;

BACTERIAL PROTEINS; BINDING SITES; CARBON MONOXIDE; HEME; HEMEPROTEINS; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTRUM ANALYSIS, RAMAN;

BACTERIA (MICROORGANISMS);

EID: 35348909635     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2007.07.010     Document Type: Article

References (29)

1. Gilles-Gonzalez M.A., and Gonzalez G. J. Inorg. Biochem. 99 (2005) 1-22
2. Roberts G.P., Kerby R.L., Youn H., and Conrad M. J. Inorg. Biochem. 99 (2005) 280-292
3. Aono S. Acc. Chem. Res. 36 (2003) 825-831
4. Kerby R.L., Youn H., Thorsteinsson M.V., and Roberts G.P. J. Mol. Biol. 325 (2003) 809-823
5. Youn H., Kerby R.L., and Roberts G.P. J. Biol. Chem. 278 (2003) 2333-2340
6. Coyle C.M., Puranik M., Youn H., Nielsen S.B., Williams R.D., Kerby R.L., Roberts G.P., and Spiro T.G. J. Biol. Chem. 278 (2003) 35384-35393
7. Ibrahim M., Kerby R.L., Puranik M., Wasbotten I.H., Youn H., Roberts G.P., and Spiro T.G. J. Biol. Chem. 281 (2006) 29165-29173
8. Puranik M., Nielsen S.B., Youn H., Hvitved A.N., Bourassa J.L., Case M.A., Tengroth C., Balakrishnan G., Thorsteinsson M.V., Groves J.T., McLendon G.L., Roberts G.P., Olson J.S., and Spiro T.G. J. Biol. Chem. 279 (2004) 21096-21108
9. Lanzilotta W.N., Schuller D.J., Thorsteinsson M.V., Kerby R.L., Roberts G.P., and Poulos T.L. Nat. Struct. Biol. 7 (2000) 876-880
10. Weber I.T., and Steitz T.A. J. Mol. Biol. 198 (1987) 311-326
11. Passner J.M., Schultz S.C., and Steitz T.A. J. Mol. Biol. 304 (2000) 847-859
12. Parkinson G., Wilson C., Gunasekera A., Ebright Y.W., Ebright R.E., and Berman H.M. J. Mol. Biol. 260 (1996) 395-408
13. Yamamoto K., Ishikawa H., Takahashi S., Ishimori K., Morishima I., Nakajima H., and Aono S. J. Biol. Chem. 276 (2001) 11473-11476
14. Kuchinskas M., Li H.Y., Conrad M., Roberts G., and Poulos T.L. Biochemistry 45 (2006) 7148-7153
15. Borjigin M., Li H.Y., Lanz N.D., Kerby R.L., Roberts G.P., and Poulos T.L. Acta. Crystallogr, Sect. D: Biol. Crystallogr. 63 (2007) 282-287
16. Kubo M., Inagaki S., Yoshioka S., Uchida T., Mizutani Y., Aono S., and Kitagawa T. J. Biol. Chem. 281 (2006) 11271-11278
17. Shelver D., Thorsteinsson M.V., Kerby R.L., Chung S.-Y., Roberts G.P., Reynolds M.F., Parks R.B., and Burstyn J.N. Biochemistry 38 (1999) 2669-2678
18. Chiang L.W., Kovari I., and Howe M.M. PCR methods and applications 2 (1993) 210-217
19. Austin J.C., Rodgers K.R., and Spiro T.G. In: Riordan J.F., and Vallee B.L. (Eds). Metallobiochemistry, Part C. Methods in Enzymology vol. 226 (1993), Academic Press Inc, San Diego 374-396
20. Takeuchi H., and Harada I. Spectrochim. Acta Part. A 42 (1986) 1069-1078
21. Takeuchi H., Watanabe N., and Harada I. Spectrochim. Acta. Part A 44 (1988) 749-761
22. Hildebrandt P.G., Copeland R.A., Spiro T.G., Otlewski J., Laskowski M., and Prendergast F.G. Biochemistry 27 (1988) 5426-5433
23. Franzen S. J. Am. Chem. Soc. 124 (2002) 13271-13281
24. C. Xu, T.G. Spiro, J. Am. Chem. Soc., submitted for publication.
25. Uchida T., Ishikawa H., Ishimori K., Morishima I., Nakajima H., Aono S., Mizutani Y., and Kitagawa T. Biochemistry 39 (2000) 12747-12752
26. Youn H., Kerby R.L., Conrad M., and Roberts G.P. J. Biol. Chem. 281 (2006) 1119-1127
27. Komori H., Inagaki S., Yoshioka S., Aono S., and Higuchi Y. J. Mol. Biol. 367 (2007) 864-871
28. Akiyama S., Fujisawa T., Ishimori K., Morishima I., and Aon S. J. Mol. Biol. 341 (2004) 651-668
29. Clark R.W., Youn H., Parks R.B., Cherney M.M., Roberts G.P., and Burstyn J.N. Biochemistry 43 (2004) 14149-14160