메뉴 건너뛰기




Volumn 54, Issue 3, 2013, Pages 1979-1987

Conserved regional 3' grouping of rare codons in the coding sequence of ocular prosecretory mitogen lacritin

Author keywords

[No Author keywords available]

Indexed keywords

LACRITIN; LIPOCALIN 1; NUCLEOTIDE; TEAR PROTEIN; UNCLASSIFIED DRUG;

EID: 84875455474     PISSN: 01460404     EISSN: 15525783     Source Type: Journal    
DOI: 10.1167/iovs.12-10740     Document Type: Article
Times cited : (7)

References (30)
  • 2
    • 64849105312 scopus 로고    scopus 로고
    • Lacritin and other new proteins of the lacrimal functional unit
    • McKown RL, Wang N, Raab RW, et al. Lacritin and other new proteins of the lacrimal functional unit. Exp Eye Res. 2009;88: 848-858.
    • (2009) Exp Eye Res , vol.88 , pp. 848-858
    • McKown, R.L.1    Wang, N.2    Raab, R.W.3
  • 3
    • 80051532533 scopus 로고    scopus 로고
    • Lacritin, a novel human tear glycoprotein, promotes sustained basal tearing and is well tolerated
    • Samudre SS, Lattanzio FA, Lossen V, et al. Lacritin, a novel human tear glycoprotein, promotes sustained basal tearing and is well tolerated. Invest Ophthalmol Vis Sci. 2011;52:6265-6270.
    • (2011) Invest Ophthalmol Vis Sci , vol.52 , pp. 6265-6270
    • Samudre, S.S.1    Lattanzio, F.A.2    Lossen, V.3
  • 4
    • 0035967890 scopus 로고    scopus 로고
    • cDNA and genomic cloning of lacritin, a novel secretion enhancing factor from the human lacrimal gland
    • Sanghi S, Kumar R, Lumsden A, et al. cDNA and genomic cloning of lacritin, a novel secretion enhancing factor from the human lacrimal gland. J Mol Biol. 2001;310:127-139.
    • (2001) J Mol Biol , vol.310 , pp. 127-139
    • Sanghi, S.1    Kumar, R.2    Lumsden, A.3
  • 5
    • 33748101108 scopus 로고    scopus 로고
    • Restricted epithelial proliferation by lacritin via PKCa-dependent NFAT and mTOR pathways
    • Wang J, Wang N, Xie J, et al. Restricted epithelial proliferation by lacritin via PKCa-dependent NFAT and mTOR pathways. J Cell Biol. 2006;174:689-700.
    • (2006) J Cell Biol , vol.174 , pp. 689-700
    • Wang, J.1    Wang, N.2    Xie, J.3
  • 6
    • 84867769941 scopus 로고    scopus 로고
    • Influence of 63Ser phosphorylation and dephosphorylation on the structure of the stathmin helical nucleation sequence: A molecular dynamics study
    • Missimer JH, Steinmetz MO, van Gunsteren WF, Dolenc J. Influence of 63Ser phosphorylation and dephosphorylation on the structure of the stathmin helical nucleation sequence: a molecular dynamics study. Biochem. 2012;51:8455-8463.
    • (2012) Biochem , vol.51 , pp. 8455-8463
    • Missimer, J.H.1    Steinmetz, M.O.2    van Gunsteren, W.F.3    Dolenc, J.4
  • 7
    • 84856740693 scopus 로고    scopus 로고
    • Efficient manipulations of synonymous mutations for controlling translation rate: An analytical approach
    • Dana A, Tuller T. Efficient manipulations of synonymous mutations for controlling translation rate: an analytical approach. J Comput Biol. 2012;92:200-231.
    • (2012) J Comput Biol , vol.92 , pp. 200-231
    • Dana, A.1    Tuller, T.2
  • 8
    • 33748121374 scopus 로고    scopus 로고
    • Heparanase deglycanation of syndecan-1 is required for binding of the epithelial-restricted prosecretory mitogen lacritin
    • Ma P, Beck SL, Raab RW, et al. Heparanase deglycanation of syndecan-1 is required for binding of the epithelial-restricted prosecretory mitogen lacritin. J Cell Biol. 2006;174:1097-1106.
    • (2006) J Cell Biol , vol.174 , pp. 1097-1106
    • Ma, P.1    Beck, S.L.2    Raab, R.W.3
  • 9
    • 20444460241 scopus 로고    scopus 로고
    • The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts
    • Ozyildirim AM, Wistow GJ, Gao J, et al. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. Invest Ophthalmol Vis Sci. 2005;46:1572-1580.
    • (2005) Invest Ophthalmol Vis Sci , vol.46 , pp. 1572-1580
    • Ozyildirim, A.M.1    Wistow, G.J.2    Gao, J.3
  • 10
    • 68249130936 scopus 로고    scopus 로고
    • Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation
    • Parmley J, Huynen M. Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation. PLoS Genet. 2009;5:e1000548.
    • (2009) PLoS Genet , vol.5
    • Parmley, J.1    Huynen, M.2
  • 11
    • 84861750664 scopus 로고    scopus 로고
    • Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events
    • Chartier M, Gaudreault F, Najmanovich R. Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. Bioinformatics. 2012;28:1438-1445.
    • (2012) Bioinformatics , vol.28 , pp. 1438-1445
    • Chartier, M.1    Gaudreault, F.2    Najmanovich, R.3
  • 12
    • 77951715627 scopus 로고    scopus 로고
    • An evolutionarily conserved mechanism for controlling the efficiency of protein translation
    • Tuller T, Carmi A, Vestigian K, et al. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell. 2010;141:344-354.
    • (2010) Cell , vol.141 , pp. 344-354
    • Tuller, T.1    Carmi, A.2    Vestigian, K.3
  • 13
    • 33847305359 scopus 로고    scopus 로고
    • Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species
    • Man O, Pilpel Y. Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species. Nat Genet. 2007;39:415-421.
    • (2007) Nat Genet , vol.39 , pp. 415-421
    • Man, O.1    Pilpel, Y.2
  • 14
  • 16
    • 8344256552 scopus 로고    scopus 로고
    • Recombinant protein folding and misfolding in Escherichia coli
    • Baneyx F, Mujacic M. Recombinant protein folding and misfolding in Escherichia coli. Nat Biotechnol. 2004;22: 1399-1408.
    • (2004) Nat Biotechnol , vol.22 , pp. 1399-1408
    • Baneyx, F.1    Mujacic, M.2
  • 17
    • 1242299059 scopus 로고    scopus 로고
    • Protein stabilization by salt bridges: Concepts, experimental approaches and clarification of some misunderstandings
    • Bosshard HR, Marti DN, Jelesarov I. Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings. J Mol Recognit. 2004;17:1-16.
    • (2004) J Mol Recognit , vol.17 , pp. 1-16
    • Bosshard, H.R.1    Marti, D.N.2    Jelesarov, I.3
  • 18
    • 0021764898 scopus 로고
    • Translation is a nonuniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains
    • Varenne S, Buc J, Lloubes R, Lazdunski C. Translation is a nonuniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains. J Mol Biol. 1984; 180:549-576.
    • (1984) J Mol Biol , vol.180 , pp. 549-576
    • Varenne, S.1    Buc, J.2    Lloubes, R.3    Lazdunski, C.4
  • 19
    • 0021731777 scopus 로고
    • Escherichia coli ribosomes translate in vivo with variable rate
    • Pedersen S. Escherichia coli ribosomes translate in vivo with variable rate. EMBO J. 1984;3:2895-2898.
    • (1984) EMBO J , vol.3 , pp. 2895-2898
    • Pedersen, S.1
  • 20
    • 34547657193 scopus 로고    scopus 로고
    • Positive selection for unpreferred codon usage in eukaryotic genomes
    • Neafsey DE, Galagan JE. Positive selection for unpreferred codon usage in eukaryotic genomes. BMC Evol Biol. 2007;7: 119.
    • (2007) BMC Evol Biol , vol.7 , pp. 119
    • Neafsey, D.E.1    Galagan, J.E.2
  • 21
    • 84868641746 scopus 로고    scopus 로고
    • Detection of prosecretory mitogen lacritin in nonprimate tears primarily as a C-terminallike fragment
    • Laurie DE, Splan RK, Green K, et al. Detection of prosecretory mitogen lacritin in nonprimate tears primarily as a C-terminallike fragment. Invest Ophthalmol Vis Sci. 2012;53:6130-6136.
    • (2012) Invest Ophthalmol Vis Sci , vol.53 , pp. 6130-6136
    • Laurie, D.E.1    Splan, R.K.2    Green, K.3
  • 22
    • 79952626682 scopus 로고    scopus 로고
    • Focus on molecules: Tear lipocalin
    • Glasgow BJ, Gasymov OK. Focus on molecules: tear lipocalin. Exp Eye Res. 2011;92:242-243.
    • (2011) Exp Eye Res , vol.92 , pp. 242-243
    • Glasgow, B.J.1    Gasymov, O.K.2
  • 24
    • 79957852647 scopus 로고    scopus 로고
    • The imprint of codons on protein structure
    • Deane CM, Saunders R. The imprint of codons on protein structure. Biotechnol J. 2011;6:641-649.
    • (2011) Biotechnol J , vol.6 , pp. 641-649
    • Deane, C.M.1    Saunders, R.2
  • 25
    • 19944433283 scopus 로고    scopus 로고
    • Ribosome stalling regulates IRES-mediated translation in eukaryotes, a parallel to prokaryotic attenuation
    • Fernandez J, Yaman I, Huang C, et al. Ribosome stalling regulates IRES-mediated translation in eukaryotes, a parallel to prokaryotic attenuation. Mol Cell. 2005;17:405-416.
    • (2005) Mol Cell , vol.17 , pp. 405-416
    • Fernandez, J.1    Yaman, I.2    Huang, C.3
  • 26
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: A database of transfer RNA genes detected in genomic sequence
    • Chan PP, Lowe TM. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 2009; D93-D97.
    • (2009) Nucleic Acids Res
    • Chan, P.P.1    Lowe, T.M.2
  • 27
    • 80053649204 scopus 로고    scopus 로고
    • tRNA: Vast reservoir of RNA molecules with unexpected regulatory function
    • Geslain R, Pan T. tRNA: vast reservoir of RNA molecules with unexpected regulatory function. Proc Natl Acad Sci U S A. 2011;108:16489-16890.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 16489-16890
    • Geslain, R.1    Pan, T.2
  • 28
    • 33846021292 scopus 로고    scopus 로고
    • Tissue-specific differences in human transfer RNA expression
    • Dittmar KA, Goodenbour JM, Pan T. Tissue-specific differences in human transfer RNA expression. PLoS Genet. 2006;2:e221.
    • (2006) PLoS Genet , vol.2
    • Dittmar, K.A.1    Goodenbour, J.M.2    Pan, T.3
  • 30
    • 0016329633 scopus 로고
    • Studies on the specialized transfer RNA population of the lens
    • Ortwerth BJ, Chu-Der OM. Studies on the specialized transfer RNA population of the lens. Exp Eye Res. 1974;19: 521-532.
    • (1974) Exp Eye Res , vol.19 , pp. 521-532
    • Ortwerth, B.J.1    Chu-Der, O.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.