-
1
-
-
4344579113
-
The SINEencoded mouse B2 RNA represses mRNA transcription in response to heat shock
-
Allen TA, Von Kaenel S, Goodrich JA, Kugel JF (2004) The SINEencoded mouse B2 RNA represses mRNA transcription in response to heat shock. Nat Struct Mol Biol 11: 816-821
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 816-821
-
-
Allen, T.A.1
Von Kaenel, S.2
Goodrich, J.A.3
Kugel, J.F.4
-
2
-
-
79958701393
-
Inhibiting eukaryotic transcription: Which compound to choose? How to evaluate its activity?
-
Bensaude O (2011) Inhibiting eukaryotic transcription: which compound to choose? How to evaluate its activity? Transcription 2: 103-108
-
(2011)
Transcription
, vol.2
, pp. 103-108
-
-
Bensaude, O.1
-
3
-
-
50649098886
-
Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAAdependent manner
-
Borodulina OR, Kramerov DA (2008) Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAAdependent manner. RNA 14: 1865-1873
-
(2008)
RNA
, vol.14
, pp. 1865-1873
-
-
Borodulina, O.R.1
Kramerov, D.A.2
-
4
-
-
38349133687
-
Transcription of hepatitis delta virus RNA by RNA polymerase II
-
Chang J, Nie X, Chang HE, Han Z, Taylor J (2008) Transcription of hepatitis delta virus RNA by RNA polymerase II. J Virol 82: 1118-1127
-
(2008)
J Virol
, vol.82
, pp. 1118-1127
-
-
Chang, J.1
Nie, X.2
Chang, H.E.3
Han, Z.4
Taylor, J.5
-
5
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer P, Bushnell DA, Fu J, Gnatt AL, Maier-Davis B, Thompson NE, Burgess RR, Edwards AM, David PR, Kornberg RD (2000) Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288: 640-649
-
(2000)
Science
, vol.288
, pp. 640-649
-
-
Cramer, P.1
Bushnell, D.A.2
Fu, J.3
Gnatt, A.L.4
Maier-Davis, B.5
Thompson, N.E.6
Burgess, R.R.7
Edwards, A.M.8
David, P.R.9
Kornberg, R.D.10
-
6
-
-
0016202080
-
Role of deoxyribonucleic acid-ribonucleic acid hybrids in eukaryotes. Synthetic riboand deoxyribopolynucleotides as template for yeast ribonucleic acid polymerase B (or II)
-
Dezelee S, Sentenac A, Fromageot P (1974) Role of deoxyribonucleic acid-ribonucleic acid hybrids in eukaryotes. Synthetic riboand deoxyribopolynucleotides as template for yeast ribonucleic acid polymerase B (or II). J Biol Chem 249: 5978-5983
-
(1974)
J Biol Chem
, vol.249
, pp. 5978-5983
-
-
Dezelee, S.1
Sentenac, A.2
Fromageot, P.3
-
8
-
-
4344583992
-
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis
-
Espinoza CA, Allen TA, Hieb AR, Kugel JF, Goodrich JA (2004) B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat Struct Mol Biol 11: 822-829
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 822-829
-
-
Espinoza, C.A.1
Allen, T.A.2
Hieb, A.R.3
Kugel, J.F.4
Goodrich, J.A.5
-
9
-
-
33947721021
-
Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription
-
Espinoza CA, Goodrich JA, Kugel JF (2007) Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. RNA 13: 583-596
-
(2007)
RNA
, vol.13
, pp. 583-596
-
-
Espinoza, C.A.1
Goodrich, J.A.2
Kugel, J.F.3
-
10
-
-
0033984806
-
Specific HDV RNA-templated transcription by pol II in vitro
-
Filipovska J, Konarska MM (2000) Specific HDV RNA-templated transcription by pol II in vitro. RNA 6: 41-54
-
(2000)
RNA
, vol.6
, pp. 41-54
-
-
Filipovska, J.1
Konarska, M.M.2
-
11
-
-
0023056872
-
Induction of B2 RNA polymerase III transcription by heat shock: Enrichment for heat shock induced sequences in rodent cells by hybridization subtraction
-
Fornace Jr AJ, Mitchell JB (1986) Induction of B2 RNA polymerase III transcription by heat shock: enrichment for heat shock induced sequences in rodent cells by hybridization subtraction. Nucl Acids Res 14: 5793-5811
-
(1986)
Nucl Acids Res
, vol.14
, pp. 5793-5811
-
-
Fornace Jr., A.J.1
Mitchell, J.B.2
-
12
-
-
85011941619
-
Dampening DNA binding: A common mechanism of transcriptional repression for both ncRNAs and protein domains
-
Goodrich JA, Kugel JF (2010) Dampening DNA binding: a common mechanism of transcriptional repression for both ncRNAs and protein domains. RNA Biol 7
-
(2010)
RNA Biol
, pp. 7
-
-
Goodrich, J.A.1
Kugel, J.F.2
-
13
-
-
0028352861
-
Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II
-
Goodrich JA, Tjian R (1994) Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell 77: 145-156
-
(1994)
Cell
, vol.77
, pp. 145-156
-
-
Goodrich, J.A.1
Tjian, R.2
-
14
-
-
0028230578
-
Complexes of yeast RNA polymerase II and RNA are substrates for TFIIS-induced RNA cleavage
-
Johnson TL, Chamberlin MJ (1994) Complexes of yeast RNA polymerase II and RNA are substrates for TFIIS-induced RNA cleavage. Cell 77: 217-224
-
(1994)
Cell
, vol.77
, pp. 217-224
-
-
Johnson, T.L.1
Chamberlin, M.J.2
-
15
-
-
0034840623
-
A simple and efficient method to transcribe RNAs with reduced 30 heterogeneity
-
Kao C, Rudisser S, Zheng M (2001) A simple and efficient method to transcribe RNAs with reduced 30 heterogeneity. Methods 23: 201-205
-
(2001)
Methods
, vol.23
, pp. 201-205
-
-
Kao, C.1
Rudisser, S.2
Zheng, M.3
-
16
-
-
84883799501
-
Structural Insights into transcriptional repression by noncoding RNAs that bind to human Pol II
-
Kassube SA, Fang J, Grob P, Yakovchuk P, Goodrich JA, Nogales E (2012) Structural Insights into transcriptional repression by noncoding RNAs that bind to human Pol II. J Mol Biol 2836: 00701-00702
-
(2012)
J Mol Biol
, vol.2836
, pp. 00701-00702
-
-
Kassube, S.A.1
Fang, J.2
Grob, P.3
Yakovchuk, P.4
Goodrich, J.A.5
Nogales, E.6
-
17
-
-
0032808150
-
Quantitation of RNA polymerase II and its transcription factors in an HeLa cell: Little soluble holoenzyme but significant amounts of polymerases attached to the nuclear substructure
-
Kimura H, Tao Y, Roeder RG, Cook PR (1999) Quantitation of RNA polymerase II and its transcription factors in an HeLa cell: little soluble holoenzyme but significant amounts of polymerases attached to the nuclear substructure. Mol Cell Biol 19: 5383-5392
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5383-5392
-
-
Kimura, H.1
Tao, Y.2
Roeder, R.G.3
Cook, P.R.4
-
18
-
-
0034051171
-
The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
-
Kireeva ML, Komissarova N, Waugh DS, Kashlev M (2000) The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex. J Biol Chem 275: 6530-6656
-
(2000)
J Biol Chem
, vol.275
, pp. 6530-6656
-
-
Kireeva, M.L.1
Komissarova, N.2
Waugh, D.S.3
Kashlev, M.4
-
19
-
-
28844473478
-
Short retroposons in eukaryotic genomes
-
Kramerov DA, Vassetzky NS (2005) Short retroposons in eukaryotic genomes. Int Rev Cytol 247: 165-221
-
(2005)
Int Rev Cytol
, vol.247
, pp. 165-221
-
-
Kramerov, D.A.1
Vassetzky, N.S.2
-
20
-
-
0032482923
-
Promoter escape limits the rate of transcription from the adenovirus major late promoter on negatively supercoiled templates
-
Kugel JF, Goodrich JA (1998) Promoter escape limits the rate of transcription from the adenovirus major late promoter on negatively supercoiled templates. Proc Natl Acad Sci USA 95: 9232-9237
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 9232-9237
-
-
Kugel, J.F.1
Goodrich, J.A.2
-
21
-
-
20744457353
-
RNA replication without RNA-dependent RNA polymerase: Surprises from hepatitis delta virus
-
Lai MM (2005) RNA replication without RNA-dependent RNA polymerase: surprises from hepatitis delta virus. J Virol 79: 7951-7958
-
(2005)
J Virol
, vol.79
, pp. 7951-7958
-
-
Lai, M.M.1
-
22
-
-
0029240407
-
Nucleic acid affinity chromatography: Preparation and characterization of doublestranded RNA agarose
-
Langland JO, Pettiford SM, Jacobs BL (1995) Nucleic acid affinity chromatography: preparation and characterization of doublestranded RNA agarose. Protein Expr Purif 6: 25-32
-
(1995)
Protein Expr Purif
, vol.6
, pp. 25-32
-
-
Langland, J.O.1
Pettiford, S.M.2
Jacobs, B.L.3
-
23
-
-
36249026527
-
Molecular basis of RNAdependent RNA polymerase II activity
-
Lehmann E, Brueckner F, Cramer P (2007) Molecular basis of RNAdependent RNA polymerase II activity. Nature 450: 445-449
-
(2007)
Nature
, vol.450
, pp. 445-449
-
-
Lehmann, E.1
Brueckner, F.2
Cramer, P.3
-
24
-
-
0032735573
-
Physiological stresses increase mouse short interspersed element (SINE) RNA expression in vivo
-
Li T, Spearow J, Rubin CM, Schmid CW (1999) Physiological stresses increase mouse short interspersed element (SINE) RNA expression in vivo. Gene 239: 367-372
-
(1999)
Gene
, vol.239
, pp. 367-372
-
-
Li, T.1
Spearow, J.2
Rubin, C.M.3
Schmid, C.W.4
-
25
-
-
0029030242
-
Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts
-
Liu WM, Chu WM, Choudary PV, Schmid CW (1995) Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts. Nucl Acids Res 23: 1758-1765
-
(1995)
Nucl Acids Res
, vol.23
, pp. 1758-1765
-
-
Liu, W.M.1
Chu, W.M.2
Choudary, P.V.3
Schmid, C.W.4
-
26
-
-
0025790439
-
The nonphosphorylated form of RNA polymerase II preferentially associates with the preinitiation complex
-
Lu H, Flores O, Weinmann R, Reinberg D (1991) The nonphosphorylated form of RNA polymerase II preferentially associates with the preinitiation complex. Proc Natl Acad Sci USA 88: 10004-10008
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 10004-10008
-
-
Lu, H.1
Flores, O.2
Weinmann, R.3
Reinberg, D.4
-
27
-
-
39549103642
-
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
-
Mariner PD, Walters RD, Espinoza CA, Drullinger LF, Wagner SD, Kugel JF, Goodrich JA (2008) Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell 29: 499-509
-
(2008)
Mol Cell
, vol.29
, pp. 499-509
-
-
Mariner, P.D.1
Walters, R.D.2
Espinoza, C.A.3
Drullinger, L.F.4
Wagner, S.D.5
Kugel, J.F.6
Goodrich, J.A.7
-
28
-
-
21244484548
-
The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
-
Pal M, Ponticelli AS, Luse DS (2005) The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol Cell 19: 101-110
-
(2005)
Mol Cell
, vol.19
, pp. 101-110
-
-
Pal, M.1
Ponticelli, A.S.2
Luse, D.S.3
-
29
-
-
0019402207
-
DNA-dependent RNA polymerase II of plant origin transcribes viroid RNA into fulllength copies
-
Rackwitz HR, Rohde W, Sanger HL (1981) DNA-dependent RNA polymerase II of plant origin transcribes viroid RNA into fulllength copies. Nature 291: 297-301
-
(1981)
Nature
, vol.291
, pp. 297-301
-
-
Rackwitz, H.R.1
Rohde, W.2
Sanger, H.L.3
-
30
-
-
0037388448
-
Replication of human hepatitis delta virus: Recent developments
-
Taylor JM (2003) Replication of human hepatitis delta virus: recent developments. Trends Microbiol 11: 185-190
-
(2003)
Trends Microbiol
, vol.11
, pp. 185-190
-
-
Taylor, J.M.1
-
31
-
-
73549120620
-
TFIIF facilitates dissociation of RNA polymerase II from noncoding RNAs that lack a repression domain
-
Wagner SD, Kugel JF, Goodrich JA (2010) TFIIF facilitates dissociation of RNA polymerase II from noncoding RNAs that lack a repression domain. Mol Cell Biol 30: 91-97
-
(2010)
Mol Cell Biol
, vol.30
, pp. 91-97
-
-
Wagner, S.D.1
Kugel, J.F.2
Goodrich, J.A.3
-
32
-
-
34247163202
-
6S RNA: A small RNA regulator of transcription
-
Wassarman KM (2007) 6S RNA: a small RNA regulator of transcription. Curr Opin Microbiol 10: 164-168
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 164-168
-
-
Wassarman, K.M.1
-
33
-
-
33845450357
-
Synthesis-mediated release of a small RNA inhibitor of RNA polymerase
-
Wassarman KM, Saecker RM (2006) Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. Science 314: 1601-1603
-
(2006)
Science
, vol.314
, pp. 1601-1603
-
-
Wassarman, K.M.1
Saecker, R.M.2
-
34
-
-
0034625237
-
6S RNA regulates e coli RNA polymerase activity
-
Wassarman KM, Storz G (2000) 6S RNA regulates E. coli RNA polymerase activity. Cell 101: 613-623
-
(2000)
Cell
, vol.101
, pp. 613-623
-
-
Wassarman, K.M.1
Storz, G.2
-
35
-
-
28844500614
-
The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro
-
Weaver JR, Kugel JF, Goodrich JA (2005) The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro. J Biol Chem 280: 39860-39869
-
(2005)
J Biol Chem
, vol.280
, pp. 39860-39869
-
-
Weaver, J.R.1
Kugel, J.F.2
Goodrich, J.A.3
-
36
-
-
65249158053
-
B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes
-
Yakovchuk P, Goodrich JA, Kugel JF (2009) B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes. Proc Natl Acad Sci USA 106: 5569-5574
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5569-5574
-
-
Yakovchuk, P.1
Goodrich, J.A.2
Kugel, J.F.3
|