Cloning and characterization of ribonuclease T2 gene (RNHe30) from the basidiomycete, Hericium erinaceum

Mycoscience

Volumn 54, Issue 3, 2013, Pages 188-197

  Itagaki, Tadashi ^a   Motoyoshi, Naomi ^a   Kobayashi, Hiroko ^a   Ogawa, Yoshio ^a   Hirose, Dai ^a   Inokuchi, Norio ^a  

^a NIHON UNIVERSITY   (Japan)

Author keywords

Isozyme; Phylogenetic relationship

Indexed keywords

BASIDIOMYCOTA; FUNGI; HERICIUM ERINACEUM;

EID: 84875430493     PISSN: 13403540     EISSN: 16182545     Source Type: Journal    
DOI: 10.1016/j.myc.2012.09.011     Document Type: Article

References (41)

1. Bariola PA, Howard CJ, Taylor CB, Verburg MT, Jaglan VD, Green PJ, 1994. The Arabidopsis ribonuclease gene RNS1 is tightly controlled in response to phosphate limitation. Plant Journal 6: 673-685.
2. Breathnach R, Benoist C, O'Hare K, Gannon F, Chambon P, 1978. Ovalbumin gene: Evidence for a leader sequence in mRNA and DNA sequences at the exon-intron boundaries. Proceedings of the National Academy of Sciences of the United States of America 75: 4853-4857.
3. Chenchik A, Moqadam F, Siebert PD, 1996. A new method for fulllength cDNA cloning by PCR. In: Krieg PA (ed) A laboratory guide to RNA. Isolation, analysis, and synthesis. Wiley-Liss, New York, pp 273-321.
4. Felsenstein J, 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
5. Frohman MA, Dush MK, Martin GR, 1988. Rapid production of fulllength cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proceedings of the National Academy of Sciences of the United States of America 85: 8998-9002.
6. Gascuel O, 1997. BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Molecular Biology and Evolution 14: 685-695.
7. Gurr SJ, Unkles SE, Kinghorn JR, 1987. The structure and organization of nuclear genes of filamentous fungi. In: Kinghorn JR (ed) Gene structure in eukaryotic microbes. IRL Press, Oxford, pp 93-139.
8. Hall TA, 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
9. Hillwig MS, Rizhsky L, Wang Y, Umanskaya A, Essner JJ, MacIntosh GC, 2009. Zebrafish RNase T2 genes and the evolution of secretory ribonucleases in animals. BMC Evolutionary Biology 9: 170-183.
10. Horie K, Rakwal R, Hirano M, Shibato J, Nam HW, Kim YS, Kouzuma Y, Agrawal GK, Masuo Y, Yonekura M, 2008. Proteomics of two cultivated mushrooms Sparassis crispa and Hericium erinaceum provides insight into their numerous functional protein components and diversity. Journal of Proteome Research 7: 1819-1835.
11. Horiuchi H, Yanai K, Takagi M, Yano K, Wakabayashi E, Sanda A, Mine S, Ohgi K, Irie M, 1988. Primary structure of a base nonspecific ribonuclease from Rhizopus niveus. Journal of Biochemistry 103: 408-418.
12. Inada Y, Watanabe H, Ohgi K, Irie M, 1991. Isolation, characterization, and primary structure of a base non-specific and adenylic acid preferential ribonuclease with higher specific activity from Trichoderma viride. Journal of Biochemistry 110: 896-904.
13. Inokuchi N, Saitoh S, Kobayashi H, Itagaki T, Koyama T, Uchiyama S, Iwama M, Ohgi K, Irie M, 1998. Characterization and primary structure of a base non-specific and acid ribonuclease from Dictyostelium discoideum. Journal of Biochemistry 124: 848-856.
14. Inokuchi N, Kobayashi H, Hara J, Itagaki T, Koyama T, Iwama M, Ohgi K, Irie M, 2000. Amino acid sequence of an unique ribonuclease with a C-terminus rich in O-glycosylated serine and threonine from culture medium of Lentinus edodes. Bioscience, Biotechnology, and Biochemistry 64: 44-51.
15. Irie M, 1997. RNase T1/RNase T2 family RNases. In: D'Alessio G, Riordan JF (eds), Ribonucleases: Structures and functions. Academic Press, New York, pp 101-130.
16. Irie M, Ohgi K, 1998. Structureefunction relationship of fungal base non-specific ribonucleases and their homologous RNase/RNase T2 family RNases. Recent Research Developments in Agricultural & Biological Chemistry 2: 77-95.
17. Irie M, 1999. Structureefunction relationships of acid ribonucleases: Lysosomal, vacuolar and periplasmic enzymes. Pharmacology and Therapeutics 81: 77-89.
18. Katoh K, Toh H, 2008. Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 276-285.
19. Kobayashi H, Inokuchi N, Koyama T, Watanabe H, Iwama M, Ohgi K, Irie M, 1992. Primary structure of a base non-specific and adenylic acid preferential ribonuclease from the fruit bodies of Lentinus edodes. Bioscience, Biotechnology, and Biochemistry 56: 2003-2010.
20. Kobayashi H, Imanaka M, Inokuchi N, Koyama T, Irie M, 1998. Characterization of ribonucleases from culture medium of Lentinus edodes. Bioscience, Biotechnology, and Biochemistry 62: 1604-1608.
21. Kobayashi H, Hara J, Itagaki T, Inokuchi N, Koyama T, Sanda A, Iwama M, Ohgi K, Irie M, 2000. Relationship of two ribonucleases with molecular mass of 45 kDa and 37 kDa from the culture medium of Lentinus edodes. Biological and Pharmaceutical Bulletin 23: 800-804.
22. Kobayashi H, Itagaki T, Inokuchi N, Ohgi K, Wada T, Iwama M, Irie M, 2003. A new type of RNase T2 ribonuclease in two basidiomycetes fungi, Lentinus edodes and Irpex lacteus. Bioscience, Biotechnology, and Biochemistry 67: 2307-2310.
23. MacIntosh GC, Bariola PA, Newbigin E, Green PJ, 2001. Characterization of Rny1, the Saccharomyces cerevisiae member of the T2 RNase family of RNases: Unexpected functions for ancient enzyme? Proceedings of the National Academy of Sciences of the United States of America 98: 1018-1023.
24. MacIntosh GC, Hillwing MS, Meyer A, Flagel L, 2010. RNase T2 genes from rice and the evolution of secretory ribonucleases in plants. Molecular Genetics and Genomics 283: 381-396.
25. Martin F, et al., 2008. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452: 88-92.
26. Mount SM, 1982. A catalog of splice junction sequences. Nucleic Acids Research 10: 459-472.
27. Mullis K, Faloona FA, 1987. Specific synthesis of DNA in vitro via polymerase-catalyze chain reaction. Methods in Enzymology 155: 335-350.
28. Ochman H, Gerber AS, Hartl DL, 1988. Genetic applications of an inverse polymerase chain reaction. Genetics 120: 621-623.
29. Roiz L, Smirnoff P, Bar-Eli M, Schwartz B, Shoseyov O, 2006. ACTIBIND, an actin-binding fungal T2-RNase with antiangiogenic and anticarcinogenic characteristics. Cancer 15: 2295-2308.
30. Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N, 1985. Enzymatic amplification of b-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350-1354.
31. Sato K, Egami F, 1957. Studies on ribonuclease in Takadiastase I. Journal of Biochemistry 44: 735-767.
32. Schwartz B, Shoseyov O, Melnikova VO, McCarty M, Leslie M, Roiz L, Smirnoff P, Hu GF, Lev D, Bar-Eli M, 2007. ACTIBIND, a T2 RNase, competes with angiogenin and inhibits human melanoma growth, angiogenesis, and metastasis. Cancer Research 67: 5258-5266.
33. Shimizu T, Inoue T, Shiraishi H, 2001. A senescence-associated Slike RNase in the multicellular green alga Volvox carteri. Gene 274: 227-235.
34. Silver J, Keerikatte V, 1989. Novel use of polymerase chain reaction to amplify cellular DNA adjacent to an integrated provirus. Journal of Virology 63: 1924-1928.
35. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
36. Tasaki Y, Azwan A, Hara T, Joh T, 2004. Structure and expression of a phosphate deficiency-inducible ribonuclease gene in Pholiota nameko. Current Genetics 45: 28-66.
37. Taylor CB, Bariola PA, DelCardayre SB, Raines R, 1993. RNS2: A senescence-associated RNase of Arabidopsis that diverged from the S-RNases before speciation. Proceedings of the National Academy of Sciences of the United States of America 90: 5118-5122.
38. Triglia T, Peterson MG, Kemp DJ, 1988. A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Research 16: 8186.
39. Watanabe H, Fauzi H, Iwama M, Onda T, Ohgi K, Irie M, 1995. Base non-specific acid ribonuclease from Irpex lacteus, primary structure and phylogenetic relationship in RNase T2 family enzyme. Bioscience, Biotechnology, and Biochemistry 59: 2097-2103.
40. Whelan S, Goldman N, 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Molecular Biology and Evolution 18: 691-699.
41. Yang BK, Park JB, Song CH, 2003. Hypolipidemic effect of an exobiopolymer produced from a submerged mycelial culture of Hericium erinaceus. Bioscience, Biotechnology, and Biochemistry 67: 1292-1298.