-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen, C. (1973) Principles that govern the folding of protein chains. Science 181, 223-230
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.1
-
2
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K.A. (1990) Dominant forces in protein folding. Biochemistry 29, 7133-7155
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
3
-
-
0034031680
-
Effective energy functions for protein structure prediction
-
Lazaridis, T. and Karplus, M. (2000) Effective energy functions for protein structure prediction. Curr. Opin. Struct. Biol. 10, 139-145
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 139-145
-
-
Lazaridis, T.1
Karplus, M.2
-
4
-
-
84875389904
-
Energetics of protein folding
-
Wong, K.-B., Yu, T.-H. and Chan, C.-H. (2012) Energetics of protein folding. Compr. Biophys. 3, 19-33
-
(2012)
Compr. Biophys.
, vol.3
, pp. 19-33
-
-
Wong, K.-B.1
Yu, T.-H.2
Chan, C.-H.3
-
5
-
-
0030912208
-
How protein chemists learned about the hydrophobic factor
-
Tanford, C. (1997) How protein chemists learned about the hydrophobic factor. Protein Sci. 6, 1358-1366
-
(1997)
Protein Sci.
, vol.6
, pp. 1358-1366
-
-
Tanford, C.1
-
6
-
-
79953881781
-
Contribution of hydrophobic interactions to protein stability
-
Pace, C.N., Fu, H., Fryar, K.L., Landua, J., Trevino, S.R., Shirley, B.A., Hendricks, M.M., Iimura, S., Gajiwala, K., Scholtz, J.M. and Grimsley, G.R. (2011) Contribution of hydrophobic interactions to protein stability. J. Mol. Biol. 408, 514-528
-
(2011)
J. Mol. Biol.
, vol.408
, pp. 514-528
-
-
Pace, C.N.1
Fu, H.2
Fryar, K.L.3
Landua, J.4
Trevino, S.R.5
Shirley, B.A.6
Hendricks, M.M.7
Iimura, S.8
Gajiwala, K.9
Scholtz, J.M.10
Grimsley, G.R.11
-
9
-
-
34249824268
-
Computational methods in protein structure prediction
-
Floudas, C.A. (2007) Computational methods in protein structure prediction. Biotechnol. Bioeng. 97, 207-213
-
(2007)
Biotechnol. Bioeng.
, vol.97
, pp. 207-213
-
-
Floudas, C.A.1
-
10
-
-
44349134514
-
Scpred: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
-
Kurgan, L., Cios, K. and Chen, K. (2008) SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences. BMC Bioinf. 9, 226-235
-
(2008)
BMC Bioinf.
, vol.9
, pp. 226-235
-
-
Kurgan, L.1
Cios, K.2
Chen, K.3
-
11
-
-
0037195072
-
Common features in structures and sequences of sandwich-like proteins
-
Kister, A.E., Finkelstein, A.V. and Gelfand, I.M. (2002) Common features in structures and sequences of sandwich-like proteins. Proc. Natl. Acad. Sci. U.S.A. 99, 14137-14141
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 14137-14141
-
-
Kister, A.E.1
Finkelstein, A.V.2
Gelfand, I.M.3
-
12
-
-
1842464687
-
Inter-residue interactions in protein folding and stability
-
Gromiha, M.M. and Selvaraj, S. (2004) Inter-residue interactions in protein folding and stability. Prog. Biophys. Mol. Biol. 86, 235-277
-
(2004)
Prog. Biophys. Mol. Biol.
, vol.86
, pp. 235-277
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
13
-
-
84934440069
-
Residue-residue contacts: Application to analysis of secondary structure interactions
-
Potapov, V., Edelman, M. and Sobolev, V. (2013) Residue-residue contacts: application to analysis of secondary structure interactions. Methods Mol. Biol. 932, 159-173
-
(2013)
Methods Mol. Biol.
, vol.932
, pp. 159-173
-
-
Potapov, V.1
Edelman, M.2
Sobolev, V.3
-
14
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev, V., Sorokine, A., Prilusky, J., Abola, E.E. and Edelman, M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics 15, 327-332
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
15
-
-
0030920501
-
Protein folds in the all-β and all-α classes
-
Chothia, C., Hubbard, T., Brenner, S., Barns, H. and Murzin, A. (1997) Protein folds in the all-β and all-α classes. Annu. Rev. Biophys. Biomol. Struct. 26, 597-627
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 597-627
-
-
Chothia, C.1
Hubbard, T.2
Brenner, S.3
Barns, H.4
Murzin, A.5
-
16
-
-
0028961335
-
Scop: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
17
-
-
0030777303
-
Cath: A hierarchic classification of protein domain structures
-
Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) CATH: a hierarchic classification of protein domain structures. Structure 5, 1093-1108
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
18
-
-
0015834475
-
Comparison of super-secondary structures in proteins
-
Rao, S. and Rossmann, M. (1973) Comparison of super-secondary structures in proteins. J. Mol. Biol. 76, 241-256
-
(1973)
J. Mol. Biol.
, vol.76
, pp. 241-256
-
-
Rao, S.1
Rossmann, M.2
-
19
-
-
0004032583
-
-
(5th edn), National Institutes of Health Publication No 91-3242, U.S. Department of Health and Human Services, Public Health Service, National Institutes of Health, Bethesda
-
Kabat, E.A., Wu, T.T., Perry, H.M., Gottesman, K.S. and Foeller, C. (1991) Sequences of Proteins of Immunological Interest (5th edn), National Institutes of Health Publication No. 91-3242, U.S. Department of Health and Human Services, Public Health Service, National Institutes of Health, Bethesda
-
(1991)
Sequences of Proteins of Immunological Interest
-
-
Kabat, E.A.1
Wu, T.T.2
Perry, H.M.3
Gottesman, K.S.4
Foeller, C.5
-
20
-
-
0032080047
-
Structural determinants in the sequences of immunoglobulin variable domain
-
Chothia, C., Gelfand, I. and Kister, A. (1998) Structural determinants in the sequences of immunoglobulin variable domain. J. Mol. Biol. 278, 457-479
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 457-479
-
-
Chothia, C.1
Gelfand, I.2
Kister, A.3
-
21
-
-
0028172534
-
The immunoglobulin fold: Structural classification, sequence patterns and common core
-
Bork, P., Holm, L. and Sander, C. (1994) The immunoglobulin fold: structural classification, sequence patterns and common core. J. Mol. Biol. 242, 309-320
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 309-320
-
-
Bork, P.1
Holm, L.2
Sander, C.3
-
22
-
-
2942589291
-
The linked conservation of structure and function in a family of high diversity: The monomeric cupredoxins
-
Gough, J. and Chothia, C. (2004) The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins. Structure 12, 917-925
-
(2004)
Structure
, vol.12
, pp. 917-925
-
-
Gough, J.1
Chothia, C.2
-
23
-
-
0036681397
-
Prediction of strand pairing in antiparallel and parallel β-sheets using information theory
-
Steward, R.E. and Thornton, J.M. (2002) Prediction of strand pairing in antiparallel and parallel β-sheets using information theory. Proteins 48, 178-191
-
(2002)
Proteins
, vol.48
, pp. 178-191
-
-
Steward, R.E.1
Thornton, J.M.2
-
24
-
-
76749171194
-
Prediction of the parallel/antiparallel orientation of β-strands using amino acid pairing preferences and support vector machines
-
Zhang, N., Duan, G., Gao, S., Ruan, J. and Zhang, T. (2010) Prediction of the parallel/antiparallel orientation of β-strands using amino acid pairing preferences and support vector machines. J. Theor. Biol. 263, 360-368
-
(2010)
J. Theor. Biol.
, vol.263
, pp. 360-368
-
-
Zhang, N.1
Duan, G.2
Gao, S.3
Ruan, J.4
Zhang, T.5
-
25
-
-
0036404919
-
On the significance of alternating patterns of polar and non-polar residues in β-strands
-
Mandel-Gutfreund, Y. and Gregoret, L.M. (2002) On the significance of alternating patterns of polar and non-polar residues in β-strands. J. Mol. Biol. 323, 453-461
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 453-461
-
-
Mandel-Gutfreund, Y.1
Gregoret, L.M.2
-
26
-
-
33750945327
-
A backbone-based theory of protein folding
-
Rose, G., Fleming, P., Banavar, J. and Maritan, A. (2006) A backbone-based theory of protein folding. Proc. Natl. Acad. Sci. U.S.A. 103, 16623-16633
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 16623-16633
-
-
Rose, G.1
Fleming, P.2
Banavar, J.3
Maritan, A.4
-
27
-
-
33748947665
-
Direct analysis of backbone-backbone hydrogen bond formation in protein folding transition states
-
Yang, X., Wang, M. and Fitzgerald, M.C. (2006) Direct analysis of backbone-backbone hydrogen bond formation in protein folding transition states. J. Mol. Biol. 363, 506-519
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 506-519
-
-
Yang, X.1
Wang, M.2
Fitzgerald, M.C.3
-
28
-
-
60849083585
-
Understanding the mechanism of β-sheet folding from a chemical and biological perspective
-
Jager, M., Deechongkit, S., Koepf, E.K., Nguyen, H., Gao, J., Powers, E.T., Gruebele, M. and Kelly, J.W. (2008) Understanding the mechanism of β-sheet folding from a chemical and biological perspective. Biopolymers 90, 751-758
-
(2008)
Biopolymers
, vol.90
, pp. 751-758
-
-
Jager, M.1
Deechongkit, S.2
Koepf, E.K.3
Nguyen, H.4
Gao, J.5
Powers, E.T.6
Gruebele, M.7
Kelly, J.W.8
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