Population genetic structure of the Plasmodium vivax circumsporozoite protein (Pvcsp) in Sri Lanka

Gene

Volumn 518, Issue 2, 2013, Pages 381-387

  Dias, Sajani ^a   Wickramarachchi, Thilan ^a,c   Sahabandu, Imeshi ^a   Escalante, Ananias A ^b   Udagama, Preethi V ^a  

^a UNIVERSITY OF COLOMBO   (Sri Lanka)

^b ARIZONA STATE UNIVERSITY   (United States)

^c Microtech Biological (Pvt) Ltd   (Sri Lanka)

Author keywords

Circumsporozoite Protein; Genetic diversity; Phylogeographic analysis; Plasmodium vivax; Sri Lanka; VK210 variant

Indexed keywords

CIRCUMSPOROZOITE PROTEIN;

ALLOTYPE; AMINO ACID SEQUENCE; AMPLICON; ARTICLE; GENE CLUSTER; GENETIC VARIABILITY; HAPLOTYPE; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PARASITE ISOLATION; PHYLOGENY; PLASMODIUM VIVAX; POINT MUTATION; POLYMERASE CHAIN REACTION; POPULATION GENETIC STRUCTURE; PRIORITY JOURNAL; PROTEIN MOTIF; PURIFYING SELECTION; SRI LANKA;

AMINO ACID SEQUENCE; BASE SEQUENCE; GENETIC VARIATION; GENOTYPE; HAPLOTYPES; HUMANS; MALARIA, VIVAX; PHYLOGENY; PLASMODIUM VIVAX; POINT MUTATION; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTOZOAN PROTEINS; SEQUENCE ANALYSIS, DNA; SRI LANKA;

PLASMODIUM FALCIPARUM; PLASMODIUM VIVAX; RATTUS;

EID: 84875378562     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.01.003     Document Type: Article

References (59)

1. Anderson T.J.C., Haubold B., Williams J.T., Estrada-Franco J.G., Richardson L., Mollinedo R., et al. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol. Biol. Evol. 2000, 17:1467-1482.
2. Arenas M., Posada D. The effect of recombination on the reconstruction of ancestral sequences. Genetics 2010, 184(4):1133-1139.
3. Avise J.C. Phylogeaography: the History and formation of species 2000, Harvard University Press, Cambridge, Massachusetts.
4. Briët O.J.T., Gunawardena D.M., van der Hoek W., Amerasinghe F.P. Sri Lanka malaria maps. Malar. J. 2003, 2(22). (http://www.malariajournal.com/content/2/1/22).
5. Brito C.F.A., Ferreira M.U. Molecular markers and genetic diversity of Plasmodium vivax. Mem. Inst. Oswaldo Cruz 2011, 106(1):12-26.
6. Chenet S.M., Tapia L.L., Escalante A.A., Durand S., Lucas C., Bacon D.J. Genetic diversity and population structure of genes encoding vaccine candidate antigens of Plasmodium vivax. Malar. J. 2012, 14(11):68.
7. Cochrane A.H., Nardin E.H., Arruda M., Maracic M., Clavijo P., Collins W.E., et al. Widespread reactivity of human sera with variant repeat of the circumsporozoite protein of Plasmodium vivax. Am.J. Trop. Med. Hyg. 1990, 43:446-451.
8. Coppi A., Natarajan R., Pradel G., Bennett B.L., James E.R., Roggero M.A., et al. The malaria circumsporozoite protein has two functional domains, each with distinct roles as sporozoites journey from mosquito to mammalian host. J. Exp. Med. 2011, 208(2):341-356.
9. Cornejo O.E., Escalante A.A. The origin and age of Plasmodium vivax. Trends Parasitol. 2006, 22(12):558-563.
10. Criscione C.D., Poulin R., Blouin M.S. Molecular ecology of parasites: elucidating ecological and microevolutionary processes. Mol. Ecol. 2005, 14(8):2247-2257.
11. Cui L., Mascorro C.N., Fan Q., Rzomp K.A., Khuntirat B., Zhou G., et al. Genetic diversity and multiple infections of Plasmodium vivax malaria in Western Thailand. Am.J. Trop. Med. Hyg. 2003, 68:613-619.
12. Da Silva A.N.M., Santos C.C.B., Lacerda R.N., Machado R.L.D., Póvoa M.M. Susceptibility of Anopheles aquasalis and An. darlingi to Plasmodium vivax VK210 and VK247. Mem. Inst. Oswaldo Cruz 2006, 101:547-550.
13. Delhomme B., Djian P. Expansion of mouse involucrin by intra-allelic repeat addition. Gene 2000, 252:195-207.
14. Dias S., Longacre S., Escalante A.A., Udagama-Randeniya P.V. Genetic diversity and recombination at the C-terminal fragment of the merozoite surface protein-1 of Plasmodium vivax (PvMSP-1) in Sri Lanka. Infect. Genet. Evol. 2011, 11:145-156.
15. Dias S., Somarathna M., Manamperi A., Escalante A.A., Gunasekera A.M., Udagama P.V. Evaluation of the genetic diversity of domain II of Plasmodium vivax Apical Membrane Antigen 1 (PvAMA-1) and the ensuing strain-specific immune responses in patients from Sri Lanka. Vaccine 2011, 29:7491-7504.
16. Escalante A.A., Barrio E., Ayala F.J. Evolutionary origin of human and primate malarias: Evidence from the circumsporozoite protein gene. Mol. Biol. Evol. 1995, 12:616-626.
17. Escalante A.A., Lal A.A., Ayala F.J. Genetic polymorphism and natural selection in the Malaria parasite Plasmodium falciparum. Genetics 1998, 149:189-202.
18. Escalante A.A., Cornejo O.E., Rojas A., Udhayakumar V., Lal A.A. Assessing the effect of natural selection in malaria parasites. Trends Parasitol. 2004, 20(8):388-395.
19. Fonseka J., Mendis K.N. A metropolitan hospital in a non-endemic area provides a sampling pool for epidemiological studies on vivax malaria in Sri Lanka. Trans. R. Soc. Trop. Med. Hyg. 1987, 81:360-364.
20. Garnham P.C., Bray R.S., Bruce-Chwatt L.J., Draper C.C., Killick-Kendrick R., Sergiev P.G., et al. A strain of Plasmodium vivax characterized by prolonged incubation: morphological and biological characteristics. Bull. World Health Organ. 1975, 52(1):21-32.
21. Gonzalez-Ceron L., Rodriguez M.H., Santillan F., Chavez B., Nettel J.A., Hernandez-Avila J.E., et al. Plasmodium vivax: ookinete destruction and oocyst development arrest are responsible for Anopheles albimanus resistance to circumsporozoite phenotype VK247 parasites. Exp. Parasitol. 2001, 98(3):152-161.
22. Hartl D.L. The origin of malaria: mixed messages from genetic diversity. Nat. Rev. Microbiol. 2004, 2:15-22.
23. Hernández-Martínez M.A., Escalante A.A., Arévalo-Herrera M., Herrera S. Antigenic diversity of the Plasmodium vivax circumsporozoite protein in parasite isolates of Western Colombia. Am.J. Trop. Med. Hyg. 2011, 84(2):51-57.
24. Hughes A.L. The evolution of amino acid repeat arrays in Plasmodium and other organisms. J. Mol. Evol. 2004, 59:528-535.
25. Imwong M., Pukrittayakamee S., Grüner A.C., Rénia L., Letourneur F., Looareesuwan S., et al. Practical PCR genotyping protocols for Plasmodium vivax using Pvcsp and Pvmsp1. Malar. J. 2005, 4:20.
26. Kho W.G., Jang J.Y., Hong S.T., Lee H.W., Lee W.J., Lee J.S. Border malaria characters of re-emerging vivax malaria in the Republic of Korea. Korean J. Parasitol. 1999, 37:71-76.
27. Kim T., Kim Y.J., Song K., Cha J.S.S., Kim Y.K., Suh Y.K.S.I.B., et al. The molecular characteristics of circumsporozoite protein gene subtypes from Plasmodium vivax isolates in Republic of Korea. Parasitol. Res. 2002, 88:1051-1054.
28. Kim J.R., Imwong M., Nandy A., Chotivanich K., Nontprasert A., Tonomsing N., et al. Genetic diversity of Plasmodium vivax in Kolkata, India. Malar. J. 2006, 5:71.
29. Konradsen F., Amerasinghe F.P., Van der Hoek W., Amerasinghe P.H. Malaria in Sri Lanka: Current Knowledge on Transmission and Control 2000, International Water Management Institute, Colombo, Sri Lanka.
30. Leclerc M.C., Durant P., Gauthier C., Patot S., Billote N., Menegon M., et al. Meager genetic variability of the human malaria agent Plasmodium vivax. Proc. Natl. Acad. Sci. USA 2004, 101:14455-14460.
31. Librado P., Rozas J. DnaSP v5: software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
32. Lim C.S., Kim Y.K., Lee K.N., Kim S.H., Hoffman K.J., Song K.J., et al. The analysis of circumsporozoite protein gene sequences from Plasmodium vivax isolates in the Republic of Korea. Ann. Trop. Med. Parasitol. 2001, 95:229-235.
33. Lim C.S., Tazi L., Ayala F.J. Plasmodium vivax: recent world expansion and genetic identity to Plasmodium simium. Proc. Natl. Acad. Sci. USA 2005, 102:15523-15528.
34. Machado R.L.D., Póvoa M.M. Distribution of Plasmodium vivax variants (VK210, VK247 and P. vivax-like) in three endemic areas of Amazonian Brazil and their correlation with chloroquine treatment. Trans. R. Soc. Trop. Med. Hyg. 2000, 94:377-381.
35. Manamperi A., Mahawithanage S., Fernando D., Wickremasinghe R., Bandara A., Hapuarachchi C., et al. Genotyping of Plasmodium vivax infections in Sri Lanka using Pvmsp-3α and Pvcs genes as markers: A preliminary report. Trop. Biomed. 2008, 25(2):100-106.
36. Mann V.H., Huang T., Cheng Q., Saul A. Sequence variation in the circumsporozoite protein gene of Plasmodium vivax appears to be regionally biased. Mol. Biochem. Parasitol. 1994, 68:45-52.
37. McConkey G.A., Waters A.P., McCutchan T.F. The generation of genetic diversity in malaria parasites. Annu. Rev. Microbiol. 1990, 44:479-498.
38. Mendis C., Del Giudice G., Gamage-Mendis A.C., Tougne C., Pessi A., Weerasinghe S., et al. Anti-circumsporozoite protein antibodies measure age related exposure to malaria in Kataragama, Sri Lanka. Parasite Immunol. 1992, 14(1):75-86.
39. Orjuela-Sánchez P., Karunaweera N.D., da Silva-Nunes M., da Silva N.S., Scopel K.K.G., Gonçalves R.M., et al. Single-nucleotide polymorphism, linkage disequilibrium and geographic structure in the malaria parasite Plasmodium vivax: prospects for genome-wide association studies. BMS. Genet. 2010, 11:65.
40. Patil A., Orjuela-Sánchez P., da Silva-Nunes M., Ferreira M.U. Evolutionary dynamics of the immunodominant repeats of the Plasmodium vivax malaria vaccine candidate circumsporozoite protein (CSP). Infect. Genet. Evol. 2010, 10:298-303.
41. Premaratne P.H., Aravinda B.R., Escalante A.A., Udagama P.V. Genetic diversity of Plasmodium vivax Duffy Binding Protein II (PvDBPII) under unstable transmission and low intensity malaria in Sri Lanka. Infect. Genet. Evol. 2011, 11(6):1327-1339.
42. Qari S.H., Shi Y.P., Goldman I.F., Udhayakumar V., Alpers M.P., Collins W.E., et al. Identification of Plasmodium vivax-like human malaria parasite. Lancet 1993, 341:780-783.
43. Qari S.H., Shi Y.P., Povoa M.M., Alpers M.P., Deloron P., Murphy G.S., et al. Global occurrence of Plasmodium vivax-like human malaria parasite. J. Infect. Dis. 1993, 168:1485-1489.
44. Rich S.M., Hudson R.R., Ayala F.J. Plasmodium falciparum antigenic diversity: evidence of clonal population structure. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:13040-13045.
45. Rich S.M., Licht M.C., Hudson R.R., Ayala F.J. Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum. Proc. Natl. Acad. Sci. U. S. A. 1998, 95:4425-4430.
46. Rich S.M., Ferreira M.U., Ayala F.J. The origin of antigenic diversity in Plasmodium falciparum. Parasitol. Today 2000, 16:390-396.
47. Rosenberg R., Wirtz R.A., Lanar D.E., Sattabongkot J., Hall T., Waters A.P., et al. Circumsporozoite protein heterogeneity in the human malaria parasite Plasmodium vivax. Science 1989, 245:973-976.
48. Sinnis P., Nardin E. Sporozoite antigens: biology and immunology of the circumsporozoite protein and thrombospondin related anonymous protein. Malaria Immunology 2002, 70-96. Karger, S., Basel, A.G, Switzerland. P. Perlmann, M. Troye-Blomberg (Eds.).
49. Souza-Neiras W.C., Storti-Melo L.M., Cassiano G.C., Couto V.S.C.A., Couto A.A.R.A. Plasmodium vivax circumsporozoite genotypes: a limited variation or new subspecies with major biological consequences?. Malar. J. 2010, 9:178.
50. Storti-Melo L.M., de Souza-Neiras W.C., Cassiano G.C., Joazeiro A.C.P., Fontes C.J., Bonini-Domingos C.R., et al. Plasmodium vivax circumsporozoite variants and Duffy blood group genotypes in the Brazilian Amazon region. Trans. R. Soc. Trop. Med. Hyg. 2009, 103:672-678.
51. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 10.1093/molbev/msr121.
52. Thakur A., Alam M.T., Bora H., Kaur P., Sharma Y.D. Plasmodium vivax: sequence polymorphism and effect of natural selection at apical membrane antigen-1 (PvAMA-1) among Indian population. Gene 2008, 419:35-42.
53. Tripathi V., Gupta D. Evolutionary analysis of circumsporozoite surface protein and merozoite surface protein-1 (CSP and MSP-1) sequences of malaria parasites. Bioinformation 2011, 6(8):320-323.
54. Van Rheede T., Smolenaars M.M.W., Madsden O., de Jong W.W. Molecular evolution of the mammalian prion protein. Mol. Biol. Evol. 2003, 20:111-121.
55. Wickramarachchi T., Premaratne P.H., Dias S., Handunnetti S.M., Udagama-Randeniya P.V. Genetic complexity of Plasmodium vivax infections in Sri Lanka: as reflected at the merozoite surface protein-3 locus. Ann. Trop. Med. Parasit. 2010, 104(2):95-108.
56. Zakeri S., Mehrizi A.A., Djadid N.D., Snounou G. Circumsporozoite protein gene diversity among temperate and tropical Plasmodium vivax isolates from Iran. Trop. Med. Int. Health 2006, 11:729-737.
57. Zakeri S., Raeisi A., Afsharpad M., Kakar Q., Ghasemi F., Atta H., et al. Molecular characterization of Plasmodium vivax clinical isolates in Pakistan and Iran using PvMSP-1, PvMSP-3 alpha and PvCSP genes as molecular markers. Parasitol. Int. 2010, 591:15-21.
58. Zhong D., Bonizzoni M., Zhou G., Wang G., Chen B., Vardo-Zalik A., et al. Genetic diversity of Plasmodium vivax malaria in China and Myanmar. Infect. Genet. Evol. 2011, 11(6):1419-1425.
59. Zilversmit M., Hartl D.L. Evolutionary history and population genetics of human malaria parasites. Molecular approaches to malaria 2005, 542. Press, Washington DC. I.W. Sherman (Ed.).