Proteomic analysis of elite soybean Jidou17 and its parents using iTRAQ-based quantitative approaches

Proteome Science

Volumn 11, Issue 1, 2013, Pages

  Qin, Jun ^a   Gu, Feng ^a   Liu, Duan ^b   Yin, Changcheng ^c   Zhao, Shuangjin ^a   Chen, Hao ^b   Zhang, Jianan ^a   Yang, Chunyan ^a   Zhan, Xu ^b   Zhang, Mengchen ^a  

^a INSTITUTE OF CEREAL AND OIL CROPS   (China)

^b TEXAS A AND M UNIVERSITY   (United States)

^c Beijing Protein Innovation   (China)

Author keywords

iTRAQ; Proteomic; Soybean

Indexed keywords

ARTICLE; BIOLOGICAL FUNCTIONS; CULTIVAR; FEMALE; HUMAN; JIDOU 17; MALE; NONHUMAN; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; RIBOSOME; SOYBEAN; TWO DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS;

GLYCINE MAX;

EID: 84875302327     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-11-12     Document Type: Article

References (27)

1. C SN Understanding Crop Production 1981, 1-12. Virginia: Reston Publishing company, C SN.
2. Gardner FPPRB, Mitchell RL. Physiology of Crop Plants 1985, 3-30. Iwoa: Iwoa State University Press.
3. Wang Xiaohui LD, Xu K, Zhang Z, Wu Z, Chen Z, Yang G, Yang C. Comparison on Some Physiological Characteristics of Three Evolution Types of Soybean. Plant physiology communication 2006, 42:191-194.
4. Wang Xingya ZL, Chen Y, Zhao T, Xu L, Guoqing XU. The activity of some physiological indexes of soybean leaves fed by Aphis glycines. Chinese Journal of Applied Entomology 2011, 48:1655-1660.
5. Wen Shangbin SL, Wang D, Ma F, Chen H. Stuties on the Relationship among Leaf Photosynthetic Rate. Respiration Rate. Journal of northeast normal university 1999, 1:67-70.
6. Wang Ningning WY, Zhang Z, Zhu L, Zhang R. Study on Autophosphorylation of Soybean Leaf Plasma Membrane Protein Kinases. Acta Phytophysiologica Sinica 1998, 24:146-152.
7. Chen Xiaoya TZ. Plant Physiology and Molecular Biology 2007, Higher Education Press.
8. Salavatia A, Khatoona A, Nanjoa Y, Komatsua S. Analysis of proteomic changes in roots of soybean seedlings during recovery after flooding. Journal of proteomics 2012, 75:878-893. 10.1016/j.jprot.2011.10.002, 22037232.
9. Ansuman Roy PJR, Rohila JS. The Potential of Proteomics Technologies for Crop Improvement under Drought Conditions. Crit Rev Plant Sci 2011, 30:471-490.
10. Komatsu S, Ahsan N. Soybean proteomics and its application to functional analysis. Journal of proteomics 2009, 72:325-336. 10.1016/j.jprot.2008.10.001, 19022415.
11. Komatsu S, Kobayashi Y, Nishizawa K, Nanjo Y, Furukawa K. Comparative proteomics analysis of differentially expressed proteins in soybean cell wall during flooding stress. Amino acids 2010, 39:1435-1449. 10.1007/s00726-010-0608-1, 20458513.
12. Nouri MZKS. Comparative analysis of soybean plasma membrane proteins under osmotic stress using gel-based and LC MS/MS-based proteomics approaches. Proteomics 2010, 10:1930-1945. 10.1002/pmic.200900632, 20209511.
13. Wang Linqian DY, Zhiguang T. iTRAQ labeling and biomarker discovery in comparative proteomic studies. Chemistry of life 2010, 30:135-140.
14. Ross PLHY, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S, Purkayastha S, Juhasz P, Martin S, Bartlet-Jones M, He F, Jacobson A, Pappin DJ. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004, 3:1154-1169. 10.1074/mcp.M400129-MCP200, 15385600.
15. Adav SS, Ng CS, Sze SK. iTRAQ-based quantitative proteomic analysis of Thermobifida fusca reveals metabolic pathways of cellulose utilization. Journal of proteomics 2011, 74:2112-2122. 10.1016/j.jprot.2011.05.038, 21704745.
16. Lan P, Li W, Wen TN, Shiau JY, Wu YC, Lin W, Schmidt W. iTRAQ Protein Profile Analysis of Arabidopsis Roots Reveals New Aspects Critical for Iron Homeostasis. Plant Physiol 2010, 155:821-834. 3032469, 21173025.
17. Fischer AMDW, Baker RA, Fuller MA, Stephenson LC, Grimes HD. Protein dynamics, activity and cellular localization of soybean lipoxygenases indicate distinct functional roles for individual isoforms. Plant Journal 1999, 19:543-554. 10.1046/j.1365-313X.1999.00550.x, 10504576.
18. Melan MA EA, Peterman TK. The LOX1 Gene of Arabidopsis Is Temporally and Spatially Regulated in Germinating Seedlings. Plant Physiol 1994, 105:385-393. 159367, 12232208.
19. Park TKH MA, Laskey JG, Polacco JC, Germination Germination-associated lipoxygenase transcripts persist in maturing soybean plants and are induced by jasmonate. Plant Science 1994, 96:109-117. Germination.
20. Feussner I, Kuhn H, Wasternack C. Lipoxygenase-dependent degradation of storage lipids. Trends Plant Sci 2001, 6:268-273. 10.1016/S1360-1385(01)01950-1, 11378469.
21. Grimes HDTT, Franceschi VR. Expression and Accumulation Patterns of Nitrogen-Responsive Lipoxygenase in Soybeans. Plant Physiol 1993, 103:457-466. 159004, 12231954.
22. Fridlyand LE, RS. Regulation of the Calvin cycle for CO2 fixation as an example for general control mechanisms in metabolic cycles. Biosystems 1999, 51:79-93. 10.1016/S0303-2647(99)00017-9, 10482420.
23. Streusand VJ, Portis AR. Rubisco Activase Mediates ATP-Dependent Activation of Ribulose Bisphosphate Carboxylase. Plant Physiol 1987, 85:152-154. 10.1104/pp.85.1.152, 1054220, 16665647.
24. Portis AR, J. Rubisco activase - Rubisco's catalytic chaperone. Photosynth Res 2003, 75:11-27. 10.1023/A:1022458108678, 16245090.
25. Kanehisa MaG S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 2000, 28:27-30. 10.1093/nar/28.1.27, 102409, 10592173.
26. Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 2010, 38:355-360.
27. Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res 2012, 40:109-114.