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Volumn 23, Issue 4, 2013, Pages 679-686

RNA-seq-based mapping and candidate identification of mutations from forward genetic screens

Author keywords

[No Author keywords available]

Indexed keywords

EARLY GROWTH RESPONSE FACTOR 2; ETHYLNITROSOUREA; MESSENGER RNA;

EID: 84875286904     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.147322.112     Document Type: Article
Times cited : (83)

References (28)
  • 3
    • 84858200179 scopus 로고    scopus 로고
    • Efficient mapping and cloning of mutations in zebrafish by low coverage whole genome sequencing
    • Bowen ME, Henke K, Siegfried KR, Warman ML, Harris MP. 2012. Efficient mapping and cloning of mutations in zebrafish by low coverage whole genome sequencing. Genetics 190: 1017-1024.
    • (2012) Genetics , vol.190 , pp. 1017-1024
    • Bowen, M.E.1    Henke, K.2    Siegfried, K.R.3    Warman, M.L.4    Harris, M.P.5
  • 4
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S. 1974. The genetics of Caenorhabditis elegans. Genetics 77: 71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 5
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms SnpEff: SNPs in the genome of drosophila melanogaster strain W1118; Iso-2; Iso-3
    • Cingolani P, Platts A,Wang LL, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. 2012. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly 6: 80-92.
    • (2012) Fly , vol.6 , pp. 80-92
    • Cingolani, P.1    Platts, A.2    Wang, L.L.3    Coon, M.4    Nguyen, T.5    Wang, L.6    Land, S.J.7    Lu, X.8    Ruden, D.M.9
  • 9
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks J, Nekrutenko A, Taylor J, Galaxy Team. 2010. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11: R86.
    • (2010) Genome Biol , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 10
    • 77957340554 scopus 로고    scopus 로고
    • Microtubule actin crosslinking factor 1 regulates the Balbiani body and animal-vegetal polarity of the zebrafish oocyte
    • Gupta T, Marlow FL, Ferriola D, Mackiewicz K, Dapprich J, Monos D, Mullins MC. 2010. Microtubule actin crosslinking factor 1 regulates the Balbiani body and animal-vegetal polarity of the zebrafish oocyte. PLoS Genet 6: e1001073.
    • (2010) PLoS Genet , vol.6
    • Gupta, T.1    Marlow, F.L.2    Ferriola, D.3    Mackiewicz, K.4    Dapprich, J.5    Monos, D.6    Mullins, M.C.7
  • 16
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • McLaren W, Pritchard B, Rios D, Chen Y, Flicek P, Cunningham F. 2010. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. BMC Bioinformatics 26: 2069-2070.
    • (2010) BMC Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1    Pritchard, B.2    Rios, D.3    Chen, Y.4    Flicek, P.5    Cunningham, F.6
  • 17
    • 0000526739 scopus 로고
    • Arabidopsis thaliana and plant molecular genetics
    • Meyerowitz EM, Pruitt RE. 1985. Arabidopsis thaliana and plant molecular genetics. Science 229: 1214-1218.
    • (1985) Science , vol.229 , pp. 1214-1218
    • Meyerowitz, E.M.1    Pruitt, R.E.2
  • 20
    • 0019133661 scopus 로고
    • Mutations affecting segment number and polarity in Drosophila
    • Nüsslein-Volhard C, Wieschaus E. 1980. Mutations affecting segment number and polarity in Drosophila. Nature 287: 795-801.
    • (1980) Nature , vol.287 , pp. 795-801
    • Nüsslein-Volhard, C.1    Wieschaus, E.2
  • 21
    • 84867868170 scopus 로고    scopus 로고
    • Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing
    • Obholzer N, Swinburne IA, Schwab E, Nechiporuk AV, Nicolson T, Megason SG. 2012. Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing. Development 139: 4280-4290.
    • (2012) Development , vol.139 , pp. 4280-4290
    • Obholzer, N.1    Swinburne, I.A.2    Schwab, E.3    Nechiporuk, A.V.4    Nicolson, T.5    Megason, S.G.6
  • 22
    • 53249091939 scopus 로고    scopus 로고
    • Caenorhabditis elegans mutant allele identification by whole-genome sequencing
    • Sarin S, Prabhu S, O'Meara MM, Pe'er I, Hobert O. 2008. Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Nat Methods 5: 865-867.
    • (2008) Nat Methods , vol.5 , pp. 865-867
    • Sarin, S.1    Prabhu, S.2    O'Meara, M.M.3    Pe'Er, I.4    Hobert, O.5
  • 23
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • doi: 10.1093/bib/bbs017
    • Thorvaldsdó ttir H, Robinson JT, Mesirov JP. 2012. Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration. Brief Bioinform doi: 10.1093/bib/bbs017.
    • (2012) Brief Bioinform
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 24
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 27
    • 79959460461 scopus 로고    scopus 로고
    • Planar polarity pathway and Nance-Horan syndrome-like 1b have essential cellautonomous functions in neuronal migration
    • Walsh GS, Grant PK, Morgan JA, Moens CB. 2011. Planar polarity pathway and Nance-Horan syndrome-like 1b have essential cellautonomous functions in neuronal migration. Development 138: 3033-3042.
    • (2011) Development , vol.138 , pp. 3033-3042
    • Walsh, G.S.1    Grant, P.K.2    Morgan, J.A.3    Moens, C.B.4
  • 28
    • 80052788248 scopus 로고    scopus 로고
    • The zon laboratory guide to positional cloning in zebrafish
    • Zhou Y, Zon LI. 2011. The zon laboratory guide to positional cloning in zebrafish. Methods Cell Biol 104: 287-309.
    • (2011) Methods Cell Biol , vol.104 , pp. 287-309
    • Zhou, Y.1    Zon, L.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.