RNA-eXpress annotates novel transcript features in RNA-seq data

Bioinformatics

Volumn 29, Issue 6, 2013, Pages 810-812

  Forster, Samuel C ^a   Finkel, Alexander M ^a   Gould, Jodee A ^a   Hertzog, Paul J ^a  

^a MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

RNA ISOFORM; UNTRANSLATED RNA;

ALGORITHM; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENOMICS; HIGH THROUGHPUT SEQUENCING; METHODOLOGY; MOLECULAR GENETICS; RNA SPLICING; SEQUENCE ANALYSIS; TRANSCRIPTION INITIATION SITE; UNTRANSLATED REGION;

ALGORITHMS; GENE EXPRESSION PROFILING; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MOLECULAR SEQUENCE ANNOTATION; RNA ISOFORMS; RNA SPLICING; RNA, UNTRANSLATED; SEQUENCE ANALYSIS, RNA; SOFTWARE; TRANSCRIPTION INITIATION SITE; UNTRANSLATED REGIONS;

EID: 84875162126     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt034     Document Type: Article

References (4)

1. Guttman,M. et al. (2010) Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol., 28, 503-510.
2. Li,H. et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
3. Trapnell,C. et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc., 7, 562-578.
4. Wang,Z. et al. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 10, 57-63.