Multilocus characterization and phylogenetic analysis of Leishmania siamensis isolated from autochthonous visceral leishmaniasis cases, southern Thailand

BMC Microbiology

Volumn 13, Issue 1, 2013, Pages

  Leelayoova, Saovanee ^a   Siripattanapipong, Suradej ^a   Hitakarun, Atitaya ^b   Kato, Hirotomo ^c   Tan Ariya, Peerapan ^b   Siriyasatien, Padet ^d   Osatakul, Seksit ^e   Mungthin, Mathirut ^a  

^a PHRAMONGKUTKLAO HOSPITAL   (Thailand)

^b Mahidol University   (Thailand)

^c HOKKAIDO UNIVERSITY   (Japan)

^d CHULALONGKORN UNIVERSITY   (Thailand)

^e PRINCE OF SONGKLA UNIVERSITY   (Thailand)

Author keywords

Leishmania siamensis; Lineage; Multilocus characterization; Phylogenetic analysis; Thailand

Indexed keywords

CYTOCHROME B; DNA; HEAT SHOCK PROTEIN 70; INTERNAL TRANSCRIBED SPACER 1; RIBOSOME RNA;

ANIMAL EXPERIMENT; ARTICLE; CHEMOTAXONOMY; CLINICAL ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; GENE EXPRESSION; GENE LOCUS; GENETIC DISTANCE; GENETIC LINKAGE; GUINEA PIG; HUMAN; HUMAN CELL; LEISHMANIA; LEISHMANIA SIAMENSIS; MICROBIAL DIVERSITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PARASITE ISOLATION; PHYLOGENETIC TREE; PHYLOGENY; SINGLE NUCLEOTIDE POLYMORPHISM; THAILAND; VISCERAL LEISHMANIASIS;

CLUSTER ANALYSIS; DNA, PROTOZOAN; HUMANS; LEISHMANIA; LEISHMANIASIS, VISCERAL; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; THAILAND;

CAVIA;

EID: 84875070300     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-13-60     Document Type: Article

References (35)

1. Visceral leishmaniasis: a case report. Suttinont P, Thammanichanont C, Chantarakul N, Southeast Asian J Trop Med Public Health 1987 18 1 103 106
2. Kala-azar: report of one imported case. Laohapaibul P, Siampakdi S, Siriraj Hosp Gaz 1960 12 561 569 (In Thai)
3. Visceral leishmaniasis (Kala-azar): with hyper-splenism successfully treated with pentavalent antimony; report of 2 cases. Chutaputti A, Siripool P, Chitchang S, Radomyos P, Intern Med 1986 2 262 265 (In Thai)
4. Autochthonous visceral leishmaniasis: a report of a second case in Thailand. Kongkaew W, Siriarayaporn P, Leelayoova S, Supparatpinyo K, Areechokchai D, Duang-ngern P, Chanachai K, Sukmee T, Samung Y, Sridurongkathum P, Southeast Asian J Trop Med Public Health 2007 38 1 8 12
5. Visceral leishmaniasis caused by Leishmania infantum in Thailand. Maharom P, Siripattanapipong S, Mungthin M, Naaglor T, Sukkawee R, Pudkorn R, Wattana W, Wanachiwanawin D, Areechokchai D, Leelayoova S, Southeast Asian J Trop Med Public Health 2008 39 6 988 990
6. Visceral leishmaniasis: the first indigenous case report in Thailand. Thisyakorn U, Jongwutiwes S, Vanichsetakul P, Lertsapcharoen P, Trans R Soc Trop Med Hyg 1999 93 1 23 24 (Pubitemid 29123714)
7. A suspected new species of Leishmania, the causative agent of visceral leishmaniasis in a Thai patient. Sukmee T, Siripattanapipong S, Mungthin M, Worapong J, Rangsin R, Samung Y, Kongkaew W, Bumrungsana K, Chanachai K, Apiwathanasorn C, Int J Parasitol 2008 38 6 617 622
8. Autochthonous Disseminated Dermal and Visceral Leishmaniasis in an AIDS Patient, Southern Thailand, Caused by Leishmania siamensis. Bualert L, Charungkiattikul W, Thongsuksai P, Mungthin M, Siripattanapipong S, Khositnithikul R, Naaglor T, Ravel C, El Baidouri F, Leelayoova S, Am J Trop Med Hyg 2012 86 5 821 824
9. Autochthonous visceral leishmaniasis in a human immunodeficiency virus (HIV)-infected patient: the first in Thailand and review of the literature. Suankratay C, Suwanpimolkul G, Wilde H, Siriyasatien P, Am J Trop Med Hyg 2010 82 1 4 8
10. Evolution of the genus Leishmania revealed by comparison of DNA and RNA polymerase gene sequences. Croan DG, Morrison DA, Ellis JT, Mol Biochem Parasitol 1997 89 2 149 159 (Pubitemid 27435089)
11. Evaluation of 7SL RNA gene sequences for the identification of Leishmania spp. Zelazny AM, Fedorko DP, Li L, Neva FA, Fischer SH, Am J Trop Med Hyg 2005 72 4 415 420 (Pubitemid 41278850)
12. Internal-transcribed-spacer (ITS) sequences used to explore phylogenetic relationships within Leishmania. Davila AM, Momen H, Ann Trop Med Parasitol 2000 94 6 651 654
13. Detection and species identification of Old World Leishmania in clinical samples using a PCR-based method. Spanakos G, Piperaki ET, Menounos PG, Tegos N, Flemetakis A, Vakalis NC, Trans R Soc Trop Med Hyg 2008 102 1 46 53 (Pubitemid 350177421)
14. Polymorphism analysis of the internal transcribed spacer and small subunit of ribosomal RNA genes of Leishmania mexicana. Berzunza-Cruz M, Cabrera N, Crippa-Rossi M, Sosa Cabrera T, Perez-Montfort R, Becker I, Parasitol Res 2002 88 10 918 925 (Pubitemid 35025142)
15. Transmembrane molecules for phylogenetic analyses of pathogenic protists: Leishmania-specific informative sites in hydrophilic loops of trans- endoplasmic reticulum N-acetylglucosamine-1-phosphate transferase. Waki K, Dutta S, Ray D, Kolli BK, Akman L, Kawazu S, Lin CP, Chang KP, Eukaryot Cell 2007 6 2 198 210
16. Phylogenic analysis of the genus Leishmania by cytochrome b gene sequencing. Asato Y, Oshiro M, Myint CK, Yamamoto Y, Kato H, Marco JD, Mimori T, Gomez EA, Hashiguchi Y, Uezato H, Exp Parasitol 2009 121 4 352 361
17. Phylogeny of Leishmania species based on the heat-shock protein 70 gene. Fraga J, Montalvo AM, De Doncker S, Dujardin JC, Van der Auwera G, Infect Genet Evol 2010 10 2 238 245
18. Clonal diversity of the glutamate dehydrogenase gene in Giardia duodenalis from Thai isolates: evidence of genetic exchange or mixed infections? Siripattanapipong S, Leelayoova S, Mungthin M, Thompson RC, Boontanom P, Saksirisampant W, Tan-Ariya P, BMC Microbiol 2011 11 206
19. Discrimination amongst Leishmania by polymerase chain reaction and hybridization with small subunit ribosomal DNA derived oligonucleotides. Uliana SR, Nelson K, Beverley SM, Camargo EP, Floeter-Winter LM, J Eukaryot Microbiol 1994 41 4 324 330 (Pubitemid 2130931)
20. Leishmania donovani: intraspecific polymorphisms of Sudanese isolates revealed by PCR-based analyses and DNA sequencing. El Tai NO, El Fari M, Mauricio I, Miles MA, Oskam L, El Safi SH, Presber WH, Schonian G, Exp Parasitol 2001 97 1 35 44 (Pubitemid 32989014)
21. Heat-shock protein 70 PCR-RFLP: a universal simple tool for Leishmania species discrimination in the New and Old World. Montalvo AM, Fraga J, Monzote L, Montano I, De Doncker S, Dujardin JC, Van der Auwera G, Parasitology 2010 137 8 1159 1168
22. Establishment of a mass screening method of sand fly vectors for Leishmania infection by molecular biological methods. Kato H, Uezato H, Gomez EA, Terayama Y, Calvopina M, Iwata H, Hashiguchi Y, Am J Trop Med Hyg 2007 77 2 324 329 (Pubitemid 351859283)
23. Clustal W and Clustal X version 2.0. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Bioinformatics 2007 23 21 2947 2948
24. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Kumar S, Nei M, Dudley J, Tamura K, Brief Bioinform 2008 9 4 299 306 (Pubitemid 351890826)
25. MRBAYES: Bayesian inference of phylogenetic trees. Huelsenbeck JP, Ronquist F, Bioinformatics 2001 17 8 754 755 (Pubitemid 32851390)
26. Modeltest: testing the model of DNA substitution. Posada D, Crandall KA, Bioinformatics 1998 14 9 817 818 (Pubitemid 28552116)
27. Species discrimination and phylogenetic inference of 17 Chinese Leishmania isolates based on internal transcribed spacer 1 (ITS1) sequences. Yang BB, Guo XG, Hu XS, Zhang JG, Liao L, Chen DL, Chen JP, Parasitol Res 2010 107 5 1049 1065
28. Evolution of nuclear ribosomal RNAs in kinetoplastid protozoa: perspectives on the age and origins of parasitism. Fernandes AP, Nelson K, Beverley SM, Proc Natl Acad Sci USA 1993 90 24 11608 11612 (Pubitemid 24008688)
29. Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites. van Eys GJ, Schoone GJ, Kroon NC, Ebeling SB, Mol Biochem Parasitol 1992 51 1 133 142
30. Evolution, classification and geographical distribution. Lainson R, Shaw JJ, The Leishmaniases in Biology and Medicine. Volume 1 London: Academic Press, Peters W, Killick-Kendrick R, 1987 1 120
31. Occurrence of Leishmania sp. in cutaneous lesions of horses in Central Europe. Muller N, Welle M, Lobsiger L, Stoffel MH, Boghenbor KK, Hilbe M, Gottstein B, Frey CF, Geyer C, von Bomhard W, Vet Parasitol 2009 166 3-4 346 351
32. An autochthonous case of cutaneous bovine leishmaniasis in Switzerland. Lobsiger L, Muller N, Schweizer T, Frey CF, Wiederkehr D, Zumkehr B, Gottstein B, Vet Parasitol 2010 169 3-4 408 414
33. Autochthonous Leishmania siamensis in horse, Florida. Reuss SM, Dunbar MD, Calderwood Mays MB, Owen JL, Mallicote MF, Archer LL, Wellehan JF Jr, USA Emerg Infect Dis 2012 18 9 1545 1547
34. Molecular phylogenetic in kinetoplats. Phillipe H, Evolutionary Relationships among Protozoa London: Systematics Association, Coomb GH, Vickerman K, Sleigh MA, Warren A, 1998 195 212
35. A revised classification for Leishmania and Endotrypanum. Cupolillo E, Medina-Acosta E, Noyes H, Momen H, Grimaldi G Jr, Parasitol Today 2000 16 4 142 144 (Pubitemid 30162998)