Real-time, sensitive, and specific detection of promoter-polymerase interactions in gene transcription using a nanoplasmonic sensor

Advanced Materials

Volumn 25, Issue 9, 2013, Pages 1265-1269

  Song, Min Sun ^b   Choi, Seung Phill ^a   Lee, Jeewon ^a   Kwon, Young Jik ^c   Sim, Sang Jun ^a  

^a Korea University   (South Korea)

^b Sungkyunkwan University   (South Korea)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

DNA protein interaction; gene transcription; nanoplasmonic biosensor; promoter activity; real time analysis

Indexed keywords

DNA-PROTEIN INTERACTION; GENE TRANSCRIPTIONS; PROMOTER ACTIVITIES; RAYLEIGH LIGHT SCATTERINGS; REAL TIME ANALYSIS; SPECIFIC DETECTION; SPECIFIC RECOGNITION; TRANSCRIPTION ACTIVITY;

BIOSENSORS; GENES; GOLD; METAL NANOPARTICLES; OPTICAL PROPERTIES; POLYMERS; RNA;

TRANSCRIPTION;

DNA; DNA DIRECTED RNA POLYMERASE; GOLD; METAL NANOPARTICLE;

ARTICLE; CHEMICAL ANALYSIS; CHEMISTRY; GENETIC TRANSCRIPTION; GENETICS; LIGHT RELATED PHENOMENA; METABOLISM; PROMOTER REGION; TIME;

CHEMISTRY TECHNIQUES, ANALYTICAL; DNA; DNA-DIRECTED RNA POLYMERASES; GOLD; METAL NANOPARTICLES; OPTICAL PROCESSES; PROMOTER REGIONS, GENETIC; TIME FACTORS; TRANSCRIPTION, GENETIC;

EID: 84874914569     PISSN: 09359648     EISSN: 15214095     Source Type: Journal    
DOI: 10.1002/adma.201203467     Document Type: Article

References (40)

1. W. Rüger, Angew. Chem. Int. Ed. 1972, 11, 883.
2. a) S. W. Ho, G. Jona, C. T. L. Chen, M. Johnston, M. Snyder, Proc. Natl. Acad. Sci. USA 2006, 103, 9940
3. b) I. Shin, J. Kim, C. R. Cantor, C. Kang, Proc. Natl. Acad. Sci. USA 2000, 97, 3890.
4. a) A. D. McFarland, R. P. Van Duyne, Nano Lett. 2003, 3, 1057
5. b) G. L. Liu, Y. Yin, S. Kunchakarra, B. Mukherjee, D. Gerion, S. D. Jett, D. G. Bear, J. W. Gray, A. P. Alivisatos, L. P. Lee, Nat. Nanotechnol. 2006, 1, 47
6. c) A. J. Haes, R. P. Van Duyne, J. Am. Chem. Soc. 2002, 124, 10596
7. d) J. N. Anker, W. P. Hall, O. Lyandres, N. C. Shah, J. Zhao, R. P. Van Duyne, Nat. Mater. 2008, 7, 442
8. e) G. Raschke, S. Kowarik, T. Franzl, C. Sönnichsen, T. Klar, J. Feldmann, A. Nichtl, K. Kürzinger, Nano Lett. 2003, 3, 935.
9. a) C. Sönnichsen, T. Franzl, T. Wilk, G. Von Plessen, J. Feldmann, New J. Phys. 2002, 4, 93
10. b) L. J. Sherry, S. H. Chang, G. C. Schatz, R. P. Van Duyne, J. Benjamin, Y. Xia, Nano Lett. 2005, 5, 2034
11. c) A. J. Haes, R. P. Van Duyne, Anal. Bioanal. Chem. 2004, 379, 920.
12. a) R. R. Breaker, A. Banerji, G. F. Joyce, Biochemistry 1994, 33, 11980
13. b) A. T. Dobbins, M. George Jr., D. A. Basham, M. E. Ford, J. M. Houtz, M. L. Pedulla, J. G. Lawrence, G. F. Hatfull, R. W. Hendrix, J. Bacteriol. 2004, 186, 1933
14. c) E. T. Butler, M. Chamberlin, J. Biol. Chem. 1982, 257, 5772.
15. a) C. Cao, S. J. Sim, J. Nanosci. Nanotechnol. 2007, 7, 3754
16. b) Z. L. Zhi, N. Laurent, A. K. Powell, R. Karamanska, M. Fais, J. Voglmeir, A. Wright, J. M. Blackburn, P. R. Crocker, D. A. Russell, ChemBioChem 2008, 9, 1568
17. c) R. G. Chapman, E. Ostuni, L. Yan, G. M. Whitesides, Langmuir 2000, 16, 6927
18. d) C. Cao, J. P. Kim, B. W. Kim, H. Chae, H. C. Yoon, S. S. Yang, S. J. Sim, Biosens. Bioelectron. 2006, 21, 2106.
19. a) M. J. Kim, S. Zheng, T. S. Kim, S. K. Kim, BioChip J. 2011, 5, 39
20. b) F. Frederix, K. Bonroy, W. Laureyn, G. Reekmans, A. Campitelli, W. Dehaen, G. Maes, Langmuir 2003, 19, 4351.
21. a) C. Cao, S. J. Sim, Lab Chip 2009, 9, 1836
22. b) P. L. Truong, B. W. Kim, S. J. Sim, Lab Chip 2012, 12, 1102.
23. a) C. J. Orendorff, T. K. Sau, C. J. Murphy, Small 2006, 2, 636
24. b) L. Gunnarsson, T. Rindzevicius, J. Prikulis, B. Kasemo, M. Käll, S. Zou, G. C. Schatz, J. Phys. Chem. B 2005, 109, 1079
25. c) K. H. Su, Q. H. Wei, X. Zhang, J. Mock, D. Smith, S. Schultz, Nano Lett. 2003, 3, 1087
26. d) J. J. Mock, D. R. Smith, S. Schultz, Nano Lett. 2003, 3, 485
27. e) J. J. Mock, R. T. Hill, A. Degiron, S. Zauscher, A. Chilkoti, D. R. Smith, Nano Lett. 2008, 8, 2245
28. f) M. Hu, C. Novo, A. Funston, H. Wang, H. Staleva, S. Zou, P. Mulvaney, Y. Xia, G. V. Hartland, J. Mater. Chem. 2008, 18, 1949.
29. N. Blow, Nat. Methods 2009, 6, 389.
30. M. Ritzefeld, N. Sewald, J. Amino Acids 2012, 2012, 1.
31. a) C. S. Park, F. Wu, C. Wu, J. Biol. Chem. 1982, 257, 6950
32. b) J. Stefano, J. D. Gralla, J. Biol. Chem. 1980, 255, 10423.
33. M. J. Chamberlin, W. C. Nierman, J. Wiggs, N. Neff, J. Biol. Chem. 1979, 254, 10061.
34. P. H. Seeburg, C. NÜSSLEIN, H. Schaller, Eur. J. Biochem. 1977, 74, 107.
35. a) Z. Chen, T. D. Schneider, Nucleic Acids Res. 2005, 33, 6172
36. b) E. Jorgensen, R. Durbin, S. Risman, W. McAllister, J. Biol. Chem. 1991, 266, 645.
37. J. Kimling, M. Maier, B. Okenve, V. Kotaidis, H. Ballot, A. Plech, J. Phys. Chem. B 2006, 110, 15700.
38. W. Rechberger, A. Hohenau, A. Leitner, J. Krenn, B. Lamprecht, F. Aussenegg, Opt. Commun. 2003, 220, 137.
39. a) P. L. Truong, C. Cao, S. Park, M. Kim, S. J. Sim, Lab Chip 2011, 11, 2591
40. b) R. Hassanien, S. A. F. Al-Said, L. Siller, R. Little, N. G. Wright, A. Houlton, B. R. Horrocks, Nanotechnology 2012, 23, 075601.