Pseudonocardia antitumoralis sp. nov., a deoxynyboquinone-producing actinomycete isolated from a deep-sea sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART3, 2013, Pages 893-899

  Tian, Xin Peng ^a   Long, Li Juan ^a   Li, Su Mei ^a   Zhang, Jing ^a   Xu, Ying ^b   He, Jie ^b   Li, Jie ^a   Wang, Fa Zuo ^a   Li, Wen Jun ^b   Zhang, Chang Sheng ^a   Zhang, Si ^a  

^a SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

^b YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANTINEOPLASTIC AGENT; DEOXYNYBOQUINONE; PSEUDONOCARDIAN A; PSEUDONOCARDIAN B; PSEUDONOCARDIAN C; UNCLASSIFIED DRUG;

ACTINOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOMASS; CHEMOTAXONOMY; CHINA; DEEP SEA; DNA BASE COMPOSITION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; PSEUDONOCARDIA ANTITUMORALIS; PSEUDONOCARDIACEAE; SEDIMENT;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; CHINA; DNA, BACTERIAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; VITAMIN K 2; WATER MICROBIOLOGY;

EID: 84874883276     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.037135-0     Document Type: Article

References (32)

1. Bé rdy, J. (2005). Bioactive microbial metabolites. J Antibiot (Tokyo) 58, 1-26.
2. Chen, H.-H., Qin, S., Li, J., Zhang, Y.-Q., Xu, L.-H., Jiang, C.-L., Kim, C.-J. & Li, W.-J. (2009). Pseudonocardia endophytica sp. nov., isolated from the pharmaceutical plant Lobelia clavata. Int J Syst Evol Microbiol 59, 559-563.
3. Felsenstein, J. (1985). Conference limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Fenical, W., Baden, D., Burg, M., deGoyet, C. V. & Grimes, J. D. (1999). Marine-derived pharmaceuticals and related bioactive compounds. In From Monsoons to Microbes: Understanding the Ocean's Role in Human Health, pp. 71-86. Edited by W. Fenical. Washington, DC: National Academies Press.
5. Goodfellow, M. & Fiedler, H. P. (2010). A guide to successful bioprospecting: informed by actinobacterial systematics. Antonie van Leeuwenhoek 98, 119-142.
6. Groth, I., Rodríguez, C., Schütze, B., Schmitz, P., Leistner, E. & Goodfellow, M. (2004). Five novel Kitasatospora species from soil: Kitasatospora arboriphila sp. nov., K. gansuensis sp. nov., K. nipponensis sp. nov., K. paranensis sp. nov. and K. terrestris sp. nov. Int J Syst Evol Microbiol 54, 2121-2129.
7. Henssen, A., Happach-Kasan, C., Renner, B. & Vobis, G. (1983). Pseudonocardia compacta sp. nov. Int J Syst Bacteriol 33, 829-836.
8. Huss, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
9. Jahnke, K. D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
10. Kelly, K. L. (1964). Inter-Society Color Council-National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
11. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
12. Kwon, H. C., Kauffman, C. A., Jensen, P. R. & Fenical, W. (2009). Marinisporolides, polyene-polyol macrolides from a marine actinomycete of the new genus Marinispora. J Org Chem 74, 675-684.
13. Lam, K. S. (2006). Discovery of novel metabolites from marine actinomycetes. Curr Opin Microbiol 9, 245-251.
14. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
15. Lee, S. D., Kim, E. S., Min, K. L., Lee, W. Y., Kang, S. O. & Hah, Y. C. (2001). Pseudonocardia kongjuensis sp. nov., isolated from a gold mine cave. Int J Syst Evol Microbiol 51, 1505-1510.
16. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
17. Li, S. M., Tian, X. P., Niu, S. W., Zhang, W. J., Chen, Y. C., Zhang, H. B., Yang, X. W., Zhang, W. M., Li, W. J. & other authors (2011). Pseudonocardians A-C, new diazaanthraquinone derivatives from Pseudonocardia sp. SCSIO 01299. Mar Drugs 9, 1428-1439.
18. Liu, Z.-P., Wu, J.-F., Liu, Z.-H. & Liu, S.-J. (2006). Pseudonocardia ammonioxydans sp. nov., isolated from coastal sediment. Int J Syst Evol Microbiol 56, 555-558.
19. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
20. Murray, R. G. E., Doetsch, R. N. & Robinow, F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
21. Park, S. W., Park, S. T., Lee, J. E. & Kim, Y. M. (2008). Pseudonocardia carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete, and an emended description of the genus Pseudonocardia. Int J Syst Evol Microbiol 58, 2475-2478.
22. Qin, S., Zhu, W.-Y., Jiang, J.-H., Klenk, H.-P., Li, J., Zhao, G.-Z., Xu, L.-H. & Li, W.-J. (2010). Pseudonocardia tropica sp. nov., an endophytic actinomycete isolated from the stem of Maytenus austroyunnanensis. Int J Syst Evol Microbiol 60, 2524-2528.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Microbiology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington: American Society for Microbiology.
25. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Tian, X.-P., Zhi, X.-Y., Qiu, Y.-Q., Zhang, Y.-Q., Tang, S.-K., Xu, L.-H., Zhang, S. & Li, W.-J. (2009). Sciscionella marina gen. nov., sp. nov., a marine actinomycete isolated from a sediment in the northern South China Sea. Int J Syst Evol Microbiol 59, 222-228.
28. Tindall, B. J., Sikorski, J., Smibert, R. A. & Krieg, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington: American Society for Microbiology.
29. Waksman, S. A. (1961). The Actinomycetes. In Classification, Identification and Descriptions of Genera and Species, vol. 2, pp. 1-363. Baltimore: Williams & Wilkins.
30. Warwick, S., Bowen, T., McVeigh, H. & Embley, T. M. (1994). A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia. Int J Syst Bacteriol 44, 293-299.
31. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
32. Xu, P., Li, W.-J., Tang, S.-K., Zhang, Y.-Q., Chen, G.-Z., Chen, H.-H., Xu, L.-H. & Jiang, C.-L. (2005). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 55, 1149-1153.