Mapping of QTLs in tomato line FLA456 associated with resistance to a virus causing tomato yellow leaf curl disease

Euphytica

Volumn 190, Issue 2, 2013, Pages 297-308

  Kadirvel, P ^a,b   de la Pena R ^a,d   Schafleitner, R ^a   Huang, S ^a   Geethanjali, S ^a,c   Kenyon, L ^a   Tsai, W ^a   Hanson, P ^a  

^a AVRDC THE WORLD VEGETABLE CENTER   (Taiwan)

^b DIRECTORATE OF OILSEEDS RESEARCH   (India)

^c TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^d East West Seed   (Thailand)

Author keywords

Begomovirus; Geminivirus; QTL; Solanum lycopersicum; SSR; Virus resistance

Indexed keywords

BEGOMOVIRUS; EUKARYOTA; GEMINIVIRIDAE; LYCOPERSICON ESCULENTUM; TOMATO YELLOW LEAF CURL THAILAND VIRUS;

EID: 84874796405     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-012-0848-0     Document Type: Article

References (52)

1. Agrama HA, Scott JW (2006) Quantitative trait loci for Tomato yellow leaf curl virus and Tomato mottle virus resistance in tomato. J Amer Soc Hort Sci 131: 267-272.
2. Anbinder I, Reuveni M, Azari R, Paran I, Nahon S, Shlomo H, Chen L, Lapidot M, Levin I (2009) Molecular dissection of Tomato leaf curl virus resistance in tomato line TY172 derived from Solanum peruvianum. Theor Appl Genet 119: 519-530.
3. Banerjee MK, Kalloo G (1987) Inheritance of tomato leaf curl virus resistance in Lycopersicon hirsutum f. glabratum. Euphytica 36: 581-584.
4. Bian XY, Thomas MR, Rasheed MS, Saeed M, Hanson P, De Barro PJ, Rezaian MA (2007) A recessive allele (tgr-1) conditioning tomato resistance to geminivirus infection is associated with impaired viral movement. Phytopathology 97: 930-937.
5. Chagué V, Mercier JC, Guenard M, de Courcel A, Vedel F (1997) Identification of RAPD markers linked to a locus involved in quantitative resistance to TYLCV in tomato by bulked segregant analysis. Theor Appl Genet 95: 671-677.
6. Chowda Reddy RV, Colvin J, Muniyappa V, Seal S (2005) Diversity and distribution of begomoviruses infecting tomato in India. Arch Virol 150: 845-867.
7. Cohen S, Antignus Y (1994) Tomato yellow leaf curl virus, a whitefly-borne geminivirus of tomatoes. Adv Dis Vector Res 10: 259-288.
8. Cohen S, Nitzani FE (1966) Transmission and host range of the tomato yellow leaf curl virus. Phytopathology 56: 1127-1131.
9. de la Peña RC, Kadirvel P, Venkatesan S, Kenyon L, Hughes J (2010) Integrated approaches to manage tomato yellow leaf curl viruses. In: Hou CT, Shaw JF (eds) Biocatalysis and Biomolecular Engineering. Wiley, Hoboken, pp 105-132.
10. Doerge RW, Churchill GA (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142: 285-294.
11. Fauquet C, Briddon R, Brown J, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153: 783-821.
12. Fulton TM, Chunwongse J, Tanksley SD (1995) Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol Biol Rep 13: 207-209.
13. Gandía M, Conesa A, Ancillo G, Gadea J, Forment J, Pallás V, Flores R, Duran-Vila N, Moreno P, Guerri J (2007) Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus. Virology 367: 298-306.
14. Geethanjali S, Chen KY, Pastrana DV, Wang JF (2010) Development and characterization of tomato SSR markers from genomic sequences of anchored BAC clones on chromosome 6. Euphytica 173: 85-97.
15. Geethanjali S, Kadirvel P, de la Peña RC, Sreenivasa Rao E, Wang JF (2011) Development of tomato SSR markers from anchored BAC clones of chromosome 12 and their application for genetic diversity analysis and linkage mapping. Euphytica 178: 283-295.
16. Green SK, Tsai WS, Shih SL, Rezaian MA, Duangsong U (2003) Molecular characterization of a new begomovirus associated with tomato yellow leaf curl and eggplant yellow mosaic diseases in Thailand. Plant Dis 87: 446.
17. Griffiths PD, Scott JW (2001) Inheritance and linkage of tomato mottle virus resistance genes derived from Lycopersicon chilense accession LA1932. J Amer Soc Hort Sci 126: 462-467.
18. Hanson PM, Bernacchi D, Green S, Tansksley SD, Muniyappa V, Padmaja AS, Chen H, Kuo G, Fang D, Chen J (2000) Mapping a wild tomato introgression associated with tomato yellow leaf curl virus resistance in a cultivated tomato line. J Amer Soc Hort Sci 125: 15-20.
19. Hanson P, Green SK, Kuo G (2006) Ty-2 gene on chromosome 11 conditioning geminvirus resistance in tomato. Rept Tomato Genetics Coop 56: 17-18.
20. Hutton SF, Scott JW, Schuster DJ (2012) Recessive resistance to Tomato yellow leaf curl virus from the tomato cultivar Tyking is located in the same region as Ty-5 on chromosome 4. HortScience 47: 324-327.
21. Ji Y, Schuster DJ, Scott JW (2007a) Ty-3, a begomovirus resistance locus near the tomato yellow leaf curl virus resistance locus Ty-1 on chromosome 6 of tomato. Mol Breed 20: 271-284.
22. Ji Y, Scott JW, Hanson P, Graham E, Maxwell DP (2007b) Sources of resistance, inheritance, and location of genetic loci conferring resistance to members of the tomato-infecting begomoviruses. In: Czosnek H (ed) Tomato yellow leaf curl virus disease: management, molecular biology, breeding for resistance. Kluwer, Dordrecht, pp 343-362.
23. Ji Y, Salus MS, van Betteray B, Smeets J, Jensen KS, Martin CT, Mejia L, Scott JW, Havey MJ, Maxwell DP (2007c) Co-dominant SCAR markers for detection of the Ty-3 and Ty-3a loci from Solanum chilense at 25 cM of chromosome 6 of tomato. Rept Tomato Genetics Coop 57: 25-28.
24. Ji Y, Scott JW, Maxwell DP, Schuster DJ (2008) Ty-4, a tomato yellow leaf curl virus resistance gene on chromosome 3 of tomato. Rept Tomato Genetics Coop 58: 29-31.
25. Ji Y, Scott JW, Schuster DJ (2009) Towards fine mapping of the Tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato. HortScience 44: 614-618.
26. Joehanes R, Nelson JC (2008) QGene 4. 0, an extensible Java QTL-analysis platform. Bioinformatics 24: 2788-2789.
27. Kalloo G, Banerjee MK (1990) Transfer of tomato leaf curl virus resistance from Lycopersicon hirsutum f. glabratum to L. esculentum. Plant Breed 105: 156-159.
28. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugenics 12: 172-175.
29. Lapidot M, Friedmann M (2002) Breeding for resistance to whitefly-transmitted geminiviruses. Ann Appl Biol 140: 109-127.
30. Lapidot M, Polston JE (2006) Resistance to Tomato yellow leaf curl virus in tomato. In: Loebenstein G, Carr JP (eds) Natural resistance mechanisms of plant viruses, Springer, Dordrecht, pp 503-520.
31. Maruthi MN, Rekha AR, Cork A, Colvin J, Alam SN, Kader KA (2005) First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh. Plant Dis 89: 1011. 3.
32. Moriones E, Navas-Castillo J (2000) Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Res 71: 123-134.
33. Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Ann Rev Phytopathol 49: 219-248.
34. Nicaise V, German-Retana S, Sanjuán R, Dubrana M-P, Mazier M, Maisonneuve B, Candresse T, Caranta C, Le Gall O (2003) The eukaryotic translation initiation factor 4E controls lettuce susceptibility to the potyvirus lettuce mosaic virus. Plant Physiol 132: 1272-1282.
35. Polston JE, Anderson PK (1997) The emergence of whitefly-transmitted geminiviruses in tomato in the Western Hemisphere. Plant Dis 81: 1358-1369.
36. Rochester DE, Kositratana W, Beachy RN (1990) Systemic movement and symptom production following agroinoculation with a single DNA of tomato yellow leaf curl geminivirus (Thailand). Virol 178: 520-526.
37. Ronen G, Carmel-Goren L, Zamir D, Hirschberg J (2000) An alternative pathway to β-carotene formation in plant chromoplasts discovered by map-based cloning of Beta and old-gold color mutations in tomato. PNAS 97: 11102-11107.
38. Saikia AK, Muniyappa V (1989) Epidemiology and control of tomato leaf curl virus in southern India. Tropical Agriculture 66: 350-354.
39. Shirasawa K, Asamizu E, Fukuoka H, Ohyama A, Sato S, Nakamura Y, Tabata S, Sasamoto S, Wada T, Kishida Y, Tsuruoka H, Fujishiro T, Yamada M, Isobe S (2010) An interspecific linkage map of SSR and intronic polymorphism markers in tomato. Theor Appl Genet 121(4): 731-739.
40. Sonenberg N, Morgan MA, Shatkin AJ, Merrick WC (1978) A polypeptide in eukaryotic initiation factors that cross links specifically to the 5′-terminal cap in mRNA. PNAS 75: 4843-4847.
41. Stanley J, Bisaro DM, Briddon RW, Brown JK, Fauquet CM, Harrison BD, Rybicki EP, Stenger DC (2005) Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press pp, San Diego, pp 301-326.
42. Suliman-Pollatschek SS, Kashkush K, Shats H, Hillel J, Lavi U (2002) Generation and mapping of AFLPs, SSRs, and SNPs in Lycopersicon esculentum. Cell Mol Biol Lett 7: 583-597.
43. The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635-641.
44. Tsai WS, Shih SL, Kenyon L, Green SK, Jan F-J (2011) Temporal distribution and pathogenicity of the predominate tomato-infecting begomoviruses in Taiwan. Plant Pathol 60: 787-799.
45. van Ooijen JW, Voorrips RE (2001) JoinMap® 3. 0: Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, the Netherlands.
46. Verlaan MG, Szinay D, Hutton SF, de Jong H, Kormelink R, Visser RGF, Scott JW, Bai Y (2011) Chromosomal rearrangements between tomato and Solanum chilense hamper mapping and breeding of the TYLCV resistance gene Ty-1. Plant J 68: 1093-1103.
47. Vidavski F, Czosnek H, Gazit S, Levy D, Lapidot M (2008) Pyramiding of genes conferring resistance to Tomato yellow leaf curl virus from different wild tomato species. Plant Breed 127: 625-631.
48. Vidavsky F, Czosnek H (1998) Tomato breeding lines resistant and tolerant to Tomato yellow leaf curl virus issued from Lycopersicon hirsutum. Phytopathology 88: 910-914.
49. Wang A, Krishnaswamy S (2012) Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement. Mol Plant Pathol 13: 795-803.
50. Yang Z-N, Ye X-R, Molina J, Roose ML, Mirkov TE (2003) Sequence analysis of a 282-kilobase region surrounding the Citrus tristeza virus resistance gene (Ctv) Locus in Poncirus trifoliata L. Raf. Plant Physiol 131: 482-492.
51. Zamir D, Michelson I, Zakay Y, Navot N, Zeidan N, Sarfatti M, Eshed Y, Harel E, Pleban T, van-Oss H, Kedar N, Rabinowitch HD, Czosnek H (1994) Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, Ty-1. Theor Appl Genet 88: 141-146.
52. Zhou Y-C, Noussourou M, Kon T, Rojas MR, Jiang H, Chen L-F, Gamby K, Foster R, Gilbertson RL (2008) Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow crumple virus from Mali. Arch Virol 153: 693-706.